mRNA_P-wetherbeei_contig53992.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53992.1.1
Unique NamemRNA_P-wetherbeei_contig53992.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53992.1.1 vs. uniprot
Match: A0A1V3Q0T4_9GAMM (Bifunctional diguanylate cyclase/phosphodiesterase n=1 Tax=Rhodanobacter sp. C03 TaxID=1945858 RepID=A0A1V3Q0T4_9GAMM)

HSP 1 Score: 92.0 bits (227), Expect = 4.340e-19
Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 AFCDMFGIEEAPDALAGMTAAVMLAKVVRTYADSGAAAARIRAVINAGEPVRDEEILLADGRICLRDFVPIEFDGRPHGRLWYHRDVTEQ 270
            AFC +FG+ E P  L     AV+ A +  TY D     ARI+ +++ GEPV  EEI + DGRI LRDFVPI  DG P GRLW  RD+TEQ
Sbjct:  398 AFCTLFGLSETPAELENQPVAVIYACLKPTYEDPEREVARIQQILSRGEPVEGEEIAMRDGRIYLRDFVPIRIDGVPQGRLWQQRDITEQ 487          
BLAST of mRNA_P-wetherbeei_contig53992.1.1 vs. uniprot
Match: A0A355ELP0_9DELT (Histidine kinase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A355ELP0_9DELT)

HSP 1 Score: 89.0 bits (219), Expect = 5.190e-18
Identity = 44/97 (45.36%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    4 FCDMFGIEEAPDALAGMTAAVMLAKVVRTYADSGAAAARIRAVINAGEPVRDEEILLADGRICLRDFVPIEFDGRPHGRLWYHRDVTEQQRSREALR 294
            FC  F + E+P  LAG++A  M+ K+   Y D   A ARI  ++  G+PVR EEI +A G+ CLRDFVPI   G  +GR W+H D+TE++ + E++R
Sbjct:  230 FCRSFDLHESPADLAGVSAEEMINKIRNAYLDPEKAVARIAQIVAEGKPVRGEEIAMAGGKTCLRDFVPIFVQGELYGRAWFHVDITERKTAEESIR 326          
BLAST of mRNA_P-wetherbeei_contig53992.1.1 vs. uniprot
Match: A0A1E4HJV6_9GAMM (Diguanylate cyclase n=3 Tax=Rhodanobacter TaxID=75309 RepID=A0A1E4HJV6_9GAMM)

HSP 1 Score: 79.0 bits (193), Expect = 1.650e-14
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 AFCDMFGIEEAPDALAGMTAAVMLAKVVRTYADSGAAAARIRAVINAGEPVRDEEILLADGRICLRDFVPIEFDGRPHGRLWYHRDVTE 267
            AFC +FG+ E+P  L G+ +A + A++   Y +      R+  ++   E  RDEE+LLADGR+ LRDF+PI  DG   G +W  RD+TE
Sbjct:  398 AFCALFGLAESPGELEGLPSAALHARISHLYCEPERELERMAGIVARNEESRDEEVLLADGRVLLRDFMPICIDGVAQGCIWQQRDITE 486          
BLAST of mRNA_P-wetherbeei_contig53992.1.1 vs. uniprot
Match: UPI00069EA678 (PAS domain S-box protein n=1 Tax=Rubrobacter aplysinae TaxID=909625 RepID=UPI00069EA678)

HSP 1 Score: 75.9 bits (185), Expect = 2.040e-13
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   79 VVRTYADSGAAAARIRAVINAGEPVRDEEILLADGRICLRDFVPIEFDGRPHGRLWYHRDVTEQQRSREALRESEARFRVLAEDAPVMIWLTAADGRYEFVNRA 390
            V+   AD     ARI  ++ +G  V  EE+LLADGR+  RD+VP+   G   G +W++RD+T  +R+ E LRES+ RFR L +   V + +   D R    N A
Sbjct:  799 VMNLLADPEGFVARIEEILASGRAVTGEEVLLADGRVYERDYVPVYVRGEYRGHMWHYRDLTSHKRAEERLRESQGRFRALFDQTAVGVCVADLDRRLLETNEA 902          
BLAST of mRNA_P-wetherbeei_contig53992.1.1 vs. uniprot
Match: A0A7X0AU32_9GAMM (Diguanylate cyclase (GGDEF)-like protein/PAS domain S-box-containing protein n=2 Tax=unclassified Rhodanobacter TaxID=2621553 RepID=A0A7X0AU32_9GAMM)

HSP 1 Score: 73.9 bits (180), Expect = 9.300e-13
Identity = 37/90 (41.11%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    1 AFCDMFGIEEAPDALAGMTAAVMLAKVVRTYADSGAAAARIRAVINAGEPVRDEEILLADGRICLRDFVPIEFDGRPHGRLWYHRDVTEQ 270
            AFC ++G E  P  L    ++++ +++   Y D      R+  ++  GE VRDEE+L+ DGR  LRDF PI  DG   GR+W  RDVT Q
Sbjct:  408 AFCKLYGFEMTPAELENQPSSMIFSRLTDAYKDPDKEFLRLNEILLRGEVVRDEEVLMRDGRTLLRDFTPIYIDGVRCGRIWNQRDVTSQ 497          
BLAST of mRNA_P-wetherbeei_contig53992.1.1 vs. uniprot
Match: A0A1J5SR30_9ZZZZ (Aerobic respiration control sensor protein ArcB n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5SR30_9ZZZZ)

HSP 1 Score: 72.8 bits (177), Expect = 2.400e-12
Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = 1
Query:    4 FCDMFGIEEAPDALAGMTAAVMLAKVVRTYADSGAAAARIRAVINAGEPVRDEEILLADGRICLRDFVPIEFDGRPHGRLWYHRDVTEQQRSREALRESEARFRVL 321
            FCD++ I   P+ L GMT+   +  +     +      RI  ++ AG+P  DEE  L +GR+ LRDF+PI  DG   GR+W HRD+TE + + +     E R   L
Sbjct:  333 FCDLYSIGRDPEELVGMTSTEFVELLRPCLLNPERHLGRIAELVAAGKPYHDEEYRLPNGRVVLRDFIPIAVDGIQSGRIWAHRDITELRSAEDHRHREERRLAAL 438          
BLAST of mRNA_P-wetherbeei_contig53992.1.1 vs. uniprot
Match: A0A433IJZ8_9GAMM (Histidine kinase n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A433IJZ8_9GAMM)

HSP 1 Score: 72.0 bits (175), Expect = 4.250e-12
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 1
Query:    1 AFCDMFGIEEAPDALAGMTAAVMLAKVVRTYADSGAAAARIRAVINAGEPVRDEEILLADGRICLRDFVPIEF-DGRPHGRLWYHRDVTEQQRSREALRESEARFRVLAEDAPVMIWLTAADGR 369
            AFC+MFG+   P  L G   A         +AD  +   R+  ++NAG P R+EE+LLADGR+ LRD+ P+   DG   G LW + D+T+ +R+   L +S+     + E+     + T   GR
Sbjct:   57 AFCEMFGVPS-PTLLLGNDCAADAECSKHLFADPESFLTRVAELLNAGRPSRNEELLLADGRVLLRDYAPVRAADGALLGHLWLYLDITDNKRTERELAQSQRELESIFENLQDTYYRTDQAGR 179          
BLAST of mRNA_P-wetherbeei_contig53992.1.1 vs. uniprot
Match: A0A7Y5NUQ5_9DELT (Histidine kinase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7Y5NUQ5_9DELT)

HSP 1 Score: 71.2 bits (173), Expect = 7.540e-12
Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 1
Query:    1 AFCDMFGIEEAPDALAGMTAAVMLAKVVRTYADSGAAAARIRAVINAGEPVRDEEILLADGRICLRDFVPIEFDGRPHGRLWYHRDVTEQQRSREALRESEAR--FRVLAEDAPVMIWLTAADGRYEFVNR 387
            A C ++ I  AP AL G   +    ++     DS    +RI  ++   + V  +E++L DGR+  RD+VPI  D    G LW +RDVTE ++     R +  R   R+  +  P ++W + ADG  EFVN+
Sbjct:   43 ALCTLWLIPLAPSALVGTDCSKTAQQLAPMVRDSDRWVSRIDELLKDRKAVTGDEVVLNDGRVFERDYVPISVDSVERGHLWVYRDVTESRKHARLERAAAVRDGLRLAIDAIPGLVWSSRADGYVEFVNQ 173          
BLAST of mRNA_P-wetherbeei_contig53992.1.1 vs. uniprot
Match: A0A7W9SM64_9BACT (PAS domain S-box-containing protein n=1 Tax=Armatimonas rosea TaxID=685828 RepID=A0A7W9SM64_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 1.100e-11
Identity = 36/98 (36.73%), Postives = 60/98 (61.22%), Query Frame = 1
Query:    4 FCDMFGIEEAPDALAGMTAAVMLAKVVRTYADSGAAAARIRAVINAGEPVRDEEILLADGRICLRDFVPIEFDGRPHGRLWYHRDVTEQQRSREALRE 297
            FCD+F +  AP+ L G   +    +    +A       R+  ++ A EPVR+EE+ LADGRI  RD++PI ++    G LW +RD+TE++++ +AL++
Sbjct:  168 FCDLFQVPVAPEQLIGQDCSQSGEQSKELFATPEQFVTRVGEILAAQEPVREEELRLADGRILERDYLPIFYEANYRGHLWVYRDITERKQTEKALQK 265          
BLAST of mRNA_P-wetherbeei_contig53992.1.1 vs. uniprot
Match: A0A6N9NPZ6_9FLAO (PAS domain S-box protein n=1 Tax=Acidiluteibacter ferrifornacis TaxID=2692424 RepID=A0A6N9NPZ6_9FLAO)

HSP 1 Score: 70.9 bits (172), Expect = 1.110e-11
Identity = 38/109 (34.86%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    4 FCDMFGIEEAPDALAGMTAAVMLAKVVRTYADSGAAAARIRAVINAGEPVRDEEILLADGRICLRDFVPIEFDGRPHGRLWYHRDVTEQQRSREALRESEARFRVLAED 330
            FC++F I   PD+L G+  +    +   ++ D      RI  ++ + E V ++E+LL DGRI  RD++PI  + R  G LW +RDVT Q+    A++ SE ++R + E+
Sbjct:  212 FCNLFAIPAPPDSLIGLDCSSSAEESKVSFIDEEGFVNRINEILESKEKVLNDELLLKDGRIFERDYIPIYVENRYSGHLWNYRDVTIQRNQVNAIKRSEEKYRSIIEN 320          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53992.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V3Q0T4_9GAMM4.340e-1952.22Bifunctional diguanylate cyclase/phosphodiesterase... [more]
A0A355ELP0_9DELT5.190e-1845.36Histidine kinase n=1 Tax=Deltaproteobacteria bacte... [more]
A0A1E4HJV6_9GAMM1.650e-1442.70Diguanylate cyclase n=3 Tax=Rhodanobacter TaxID=75... [more]
UPI00069EA6782.040e-1339.42PAS domain S-box protein n=1 Tax=Rubrobacter aplys... [more]
A0A7X0AU32_9GAMM9.300e-1341.11Diguanylate cyclase (GGDEF)-like protein/PAS domai... [more]
A0A1J5SR30_9ZZZZ2.400e-1236.79Aerobic respiration control sensor protein ArcB n=... [more]
A0A433IJZ8_9GAMM4.250e-1235.48Histidine kinase n=1 Tax=Candidatus Competibactera... [more]
A0A7Y5NUQ5_9DELT7.540e-1233.59Histidine kinase n=1 Tax=Polyangiaceae bacterium T... [more]
A0A7W9SM64_9BACT1.100e-1136.73PAS domain S-box-containing protein n=1 Tax=Armati... [more]
A0A6N9NPZ6_9FLAO1.110e-1134.86PAS domain S-box protein n=1 Tax=Acidiluteibacter ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53992contigP-wetherbeei_contig53992:140..532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1499967.BAYZ01000163_gene6605
Preferred nameyclK
PFAMsHAMP,HATPase_c,HisKA,Hpt,PAS_9,Response_reg
Model size393
Max annot lvl2|Bacteria
KEGG koko:K02484,ko:K07653,ko:K07654,ko:K11617
KEGG Pathwayko02020,map02020
KEGG ModuleM00460,M00461,M00481,M00754
Hectar predicted targeting categoryother localisation
GOsGO:0000155,GO:0000160,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005488,GO:0005515,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0035556,GO:0036211,GO:0042802,GO:0042803,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046983,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070297,GO:0070298,GO:0071704,GO:0140096,GO:1901564,GO:1902531,GO:1902532
Exons1
Evalue9.81e-21
EggNOG OGsCOG0642@1|root,COG2972@1|root,COG2205@2|Bacteria,COG2972@2|Bacteria,2NNXM@2323|unclassified Bacteria
EC2.7.13.3
DescriptionHis Kinase A (phosphoacceptor) domain
Cds size381
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02022
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186806.6425984-CDS-P-wetherbeei_contig53992:139..5201683186806.6425984-CDS-P-wetherbeei_contig53992:139..520Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53992 140..520 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186806.6553047-UTR-P-wetherbeei_contig53992:520..5321683186806.6553047-UTR-P-wetherbeei_contig53992:520..532Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53992 521..532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53992.1.1prot_P-wetherbeei_contig53992.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53992 140..520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53992.1.1

>prot_P-wetherbeei_contig53992.1.1 ID=prot_P-wetherbeei_contig53992.1.1|Name=mRNA_P-wetherbeei_contig53992.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
MFGIEEAPDALAGMTAAVMLAKVVRTYADSGAAAARIRAVINAGEPVRDE
EILLADGRICLRDFVPIEFDGRPHGRLWYHRDVTEQQRSREALRESEARF
RVLAEDAPVMIWLTAADGRYEFVNRAM
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mRNA from alignment at P-wetherbeei_contig53992:140..532-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53992.1.1 ID=mRNA_P-wetherbeei_contig53992.1.1|Name=mRNA_P-wetherbeei_contig53992.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig53992:140..532- (Phaeothamnion wetherbeei SAG_119_79)
GCCTTCTGCGACATGTTTGGCATTGAAGAGGCGCCGGACGCGCTTGCCGG CATGACCGCGGCGGTGATGCTCGCCAAGGTCGTGCGCACCTACGCGGATT CGGGCGCCGCCGCCGCGCGGATTCGCGCGGTGATCAATGCGGGGGAACCG GTTCGCGACGAGGAGATTCTGCTCGCCGACGGTCGCATATGCCTGCGTGA CTTCGTGCCCATCGAGTTTGACGGCCGTCCCCACGGCCGCTTGTGGTACC ACCGCGACGTGACCGAGCAGCAGCGCAGTCGCGAAGCGTTGCGCGAGAGC GAGGCACGTTTTCGCGTGCTGGCCGAGGACGCTCCGGTGATGATCTGGCT GACTGCCGCGGACGGTCGTTACGAATTCGTCAACCGCGCAATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53992:140..532-

>mRNA_P-wetherbeei_contig53992.1.1 ID=mRNA_P-wetherbeei_contig53992.1.1|Name=mRNA_P-wetherbeei_contig53992.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig53992:140..532- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGGCATTGAAGAGGCGCCGGACGCGCTTGCCGGCATGACCGCGGC
GGTGATGCTCGCCAAGGTCGTGCGCACCTACGCGGATTCGGGCGCCGCCG
CCGCGCGGATTCGCGCGGTGATCAATGCGGGGGAACCGGTTCGCGACGAG
GAGATTCTGCTCGCCGACGGTCGCATATGCCTGCGTGACTTCGTGCCCAT
CGAGTTTGACGGCCGTCCCCACGGCCGCTTGTGGTACCACCGCGACGTGA
CCGAGCAGCAGCGCAGTCGCGAAGCGTTGCGCGAGAGCGAGGCACGTTTT
CGCGTGCTGGCCGAGGACGCTCCGGTGATGATCTGGCTGACTGCCGCGGA
CGGTCGTTACGAATTCGTCAACCGCGCAATG
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