mRNA_P-wetherbeei_contig5399.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5399.1.1
Unique NamemRNA_P-wetherbeei_contig5399.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5399.1.1 vs. uniprot
Match: D8LQW7_ECTSI (Peptidase aspartic, catalytic UBA-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW7_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 5.260e-54
Identity = 88/129 (68.22%), Postives = 110/129 (85.27%), Query Frame = 1
Query:    7 DSGMLFVDCEVNGRVMRAFIDTGAEVTVISAACAERCGLSEHIDRRFAGRAIGVGSATILGRIHDVSLRLGTACLPCSLAVIDHSEMDLLVGLDVLRRYRCDISLSNNSMRFSAA-GCLREIAFLTRLE 390
            D+ MLF++CEVNGRV+RAF+DTGA+VTV+SAACAERCGL+  ID+ +AGRA+GVG A ILGRIHD S+R+G +CL CSL VI+H E+DLLVGLDVLR +RC+ISLS N M+F A  G  +E+AFLTR+E
Sbjct:  208 DNAMLFLECEVNGRVLRAFVDTGAQVTVMSAACAERCGLASRIDKSYAGRAVGVGFARILGRIHDASIRIGNSCLRCSLTVIEHGEIDLLVGLDVLRAHRCEISLSKNRMKFHAGDGPAKEVAFLTRIE 336          
BLAST of mRNA_P-wetherbeei_contig5399.1.1 vs. uniprot
Match: A0A3F2S3S5_9STRA (Ubiquitin-like domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3S5_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.120e-34
Identity = 55/121 (45.45%), Postives = 86/121 (71.07%), Query Frame = 1
Query:   16 MLFVDCEVNGRVMRAFIDTGAEVTVISAACAERCGLSEHIDRRFAGRAIGVGSATILGRIHDVSLRLGTACLPCSLAVIDHSEMDLLVGLDVLRRYRCDISLSNNSMRFSAAGCLREIAFL 378
            ML++ CEVNG  ++AF+D+GA+ T++S++CAERCG+   +D+RFAG+A+GVG+ATI+GR+H   L++G     CS  ++D   +D L GLD+L+R++C I L  N +R        E++FL
Sbjct:  164 MLYIPCEVNGTQVKAFVDSGAQSTIMSSSCAERCGIMRLVDKRFAGQAVGVGTATIIGRVHMAHLKIGNEFYNCSFTILDQQGVDFLFGLDMLKRHQCCIDLGKNVLRLHEGDQFHEVSFL 284          
BLAST of mRNA_P-wetherbeei_contig5399.1.1 vs. uniprot
Match: A0A329SNU4_9STRA (Uncharacterized protein n=44 Tax=Phytophthora TaxID=4783 RepID=A0A329SNU4_9STRA)

HSP 1 Score: 132 bits (331), Expect = 8.470e-34
Identity = 56/125 (44.80%), Postives = 88/125 (70.40%), Query Frame = 1
Query:   16 MLFVDCEVNGRVMRAFIDTGAEVTVISAACAERCGLSEHIDRRFAGRAIGVGSATILGRIHDVSLRLGTACLPCSLAVIDHSEMDLLVGLDVLRRYRCDISLSNNSMRFSAAGCLREIAFLTRLE 390
            ML++ CEVNG  ++AF+D+GA+ T++S++CAERCG+   +D+RFAG+A+GVG+ATI+G++H   L++G     CS  ++D   +D L GLD+L+R++C I LS N +R        E++FL   E
Sbjct:  211 MLYIPCEVNGTQVKAFVDSGAQSTIMSSSCAERCGIMRLVDKRFAGQAVGVGTATIIGKVHMAPLKIGNEFYNCSFTILDQQGVDFLFGLDMLKRHQCCIDLSKNVLRLHEGDSFHEVSFLPEHE 335          
BLAST of mRNA_P-wetherbeei_contig5399.1.1 vs. uniprot
Match: A0A6A3UPT6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UPT6_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.370e-33
Identity = 56/125 (44.80%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   16 MLFVDCEVNGRVMRAFIDTGAEVTVISAACAERCGLSEHIDRRFAGRAIGVGSATILGRIHDVSLRLGTACLPCSLAVIDHSEMDLLVGLDVLRRYRCDISLSNNSMRFSAAGCLREIAFLTRLE 390
            ML++ CEVNG  ++AF+D+GA+ T++S++CAERCG+   +D+RFAG A+GVG+ATI+GR+H   L++G     CS  ++D   +D L GLD+L+R++C I L  N++R        E+ FL   E
Sbjct:  211 MLYIPCEVNGTQVKAFVDSGAQSTIMSSSCAERCGIMRLVDKRFAGHAVGVGTATIIGRVHMAPLKIGDEFYNCSFTILDQQGVDFLFGLDMLKRHQCCIDLGKNALRLHEGDRFHEVPFLPEHE 335          
BLAST of mRNA_P-wetherbeei_contig5399.1.1 vs. uniprot
Match: K3WH90_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WH90_GLOUD)

HSP 1 Score: 130 bits (326), Expect = 3.480e-33
Identity = 57/125 (45.60%), Postives = 85/125 (68.00%), Query Frame = 1
Query:   16 MLFVDCEVNGRVMRAFIDTGAEVTVISAACAERCGLSEHIDRRFAGRAIGVGSATILGRIHDVSLRLGTACLPCSLAVIDHSEMDLLVGLDVLRRYRCDISLSNNSMRFSAAGCLREIAFLTRLE 390
            ML++ CEVNG  ++AF+D+GA+ T++S+ CAERCG+   +D+RFAG+A+GVG+A I+GR+H  SL++G     CS  ++D   +D L GLD+L+R+ C I L  N +R        E+AFL   E
Sbjct:  197 MLYIPCEVNGTQVKAFVDSGAQSTIMSSNCAERCGIMRLVDKRFAGQAVGVGTAKIIGRVHMASLKIGDNFYNCSFTILDQQSVDFLFGLDMLKRHLCCIDLQKNVLRLQEGAISHEVAFLPEHE 321          
BLAST of mRNA_P-wetherbeei_contig5399.1.1 vs. uniprot
Match: A0A3P7MB80_DIBLA (Asp_protease domain-containing protein n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P7MB80_DIBLA)

HSP 1 Score: 124 bits (311), Expect = 8.030e-33
Identity = 57/125 (45.60%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   16 MLFVDCEVNGRVMRAFIDTGAEVTVISAACAERCGLSEHIDRRFAGRAIGVGSATILGRIHDVSLRLGTACLPCSLAVIDHSEMDLLVGLDVLRRYRCDISLSNNSMRFSAAGCLREIAFLTRLE 390
            ML+V+ EVNG  ++AF+D+GA+ T++S  CA+RC L   ID+R+AG A GVG+ +I+GR+H   L++G A +P S  V+++  MDL++GLD+L+R+RC I L NN +     G L  + FL   E
Sbjct:   17 MLYVNVEVNGHPIKAFVDSGAQTTIMSTCCAKRCNLERLIDKRWAGMAYGVGTQSIIGRVHQAELKIGKALIPSSFVVLENQPMDLMIGLDMLKRHRCCIDLRNNVL---VVGDLATVPFLPESE 138          
BLAST of mRNA_P-wetherbeei_contig5399.1.1 vs. uniprot
Match: A0A0P1A6M1_PLAHL (Dna damage-inducible protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6M1_PLAHL)

HSP 1 Score: 132 bits (331), Expect = 8.290e-33
Identity = 58/125 (46.40%), Postives = 88/125 (70.40%), Query Frame = 1
Query:   16 MLFVDCEVNGRVMRAFIDTGAEVTVISAACAERCGLSEHIDRRFAGRAIGVGSATILGRIHDVSLRLGTACLPCSLAVIDHSEMDLLVGLDVLRRYRCDISLSNNSMRFSAAGCLREIAFLTRLE 390
            MLF+ CEVNG  ++AF+D+GA+ T++S++CAERCG+   +D+RFAG+A+GVG+ATI+G++H V L++G     CS  ++D   +D L GLD+LRR++C I L+ N +R        E+ FL   E
Sbjct:  210 MLFIPCEVNGTQVKAFVDSGAQSTIMSSSCAERCGIMRLVDKRFAGQAVGVGTATIIGKVHMVPLKVGDEFYNCSFTILDQQGVDFLFGLDMLRRHQCCIDLNKNVLRLHEGEHFHEVPFLPEHE 334          
BLAST of mRNA_P-wetherbeei_contig5399.1.1 vs. uniprot
Match: K2RM22_MACPH (Ubiquitin-associated/translation elongation factor EF1B n=2 Tax=Botryosphaeriaceae TaxID=45131 RepID=K2RM22_MACPH)

HSP 1 Score: 125 bits (313), Expect = 8.980e-33
Identity = 56/125 (44.80%), Postives = 84/125 (67.20%), Query Frame = 1
Query:   16 MLFVDCEVNGRVMRAFIDTGAEVTVISAACAERCGLSEHIDRRFAGRAIGVGSATILGRIHDVSLRLGTACLPCSLAVIDHSEMDLLVGLDVLRRYRCDISLSNNSMRFSAAGCLREIAFLTRLE 390
            ML+++CEVNG  ++AF+D+GA+ T++S +CAE CG+   ID R+AG A+GVG+A ILGR+H   + +G A +PC+  V++   +DLL GLD+L+RY+  I L  N + F       E+ FL   E
Sbjct:    1 MLYINCEVNGHPVKAFVDSGAQATIMSPSCAEACGIMRLIDNRYAGMAVGVGTAKILGRVHHAEISIGGAIMPCAFTVMEGKSVDLLFGLDMLKRYKAKIDLEKNCLCFEGI----EVPFLPESE 121          
BLAST of mRNA_P-wetherbeei_contig5399.1.1 vs. uniprot
Match: A0A4Q1BI95_TREME (DNA damage-inducible protein 1 n=1 Tax=Tremella mesenterica TaxID=5217 RepID=A0A4Q1BI95_TREME)

HSP 1 Score: 129 bits (323), Expect = 1.210e-32
Identity = 63/125 (50.40%), Postives = 87/125 (69.60%), Query Frame = 1
Query:   16 MLFVDCEVNGRVMRAFIDTGAEVTVISAACAERCGLSEHIDRRFAGRAIGVGSATILGRIHDVSLRLGTACLPCSLAVIDHSEMDLLVGLDVLRRYRCDISLSNNSMRFSAAGCLREIAFLTRLE 390
            ML+++ EVNG  ++AF+D+GA+ T+ISA CAE CG+   +DRRF+G A GVG+A ILGRIH   ++LG   LPCS +V+D   +DLL GLD+L+R++C I LS NS+R        +I FL   E
Sbjct:  196 MLYINLEVNGHPIKAFVDSGAQSTIISAECAEACGIMRLLDRRFSGVAQGVGTAQILGRIHSAQIKLGDMFLPCSFSVLDGKAVDLLFGLDMLKRHQCCIDLSTNSLRIRGT----DIPFLPEHE 316          
BLAST of mRNA_P-wetherbeei_contig5399.1.1 vs. uniprot
Match: A0A1Y3BPI3_EURMA (Rings lost / DNA-damage inducible protein ddi1-like protein n=1 Tax=Euroglyphus maynei TaxID=6958 RepID=A0A1Y3BPI3_EURMA)

HSP 1 Score: 127 bits (319), Expect = 2.270e-32
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1
Query:   16 MLFVDCEVNGRVMRAFIDTGAEVTVISAACAERCGLSEHIDRRFAGRAIGVGSATILGRIHDVSLRLGTACLPCSLAVIDHSEMDLLVGLDVLRRYRCDISLSNNSMRFSAAGCLREIAFLTRLE 390
            ML+++C+VNG  ++AF+D+GA+ T++S ACAERC +   ID R++G A GVG+  ILG+IH V L +    +PCS  +++H  MD+L+GLD+LRRY+C I L +N +R    G   E AFL+  E
Sbjct:  190 MLYINCKVNGFPIKAFVDSGAQSTIMSKACAERCNILRLIDNRWSGIARGVGTQRILGKIHLVQLEINGVFVPCSFTILEHQPMDMLLGLDMLRRYQCSIDLKSNVLRIGTTGT--ETAFLSESE 312          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5399.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQW7_ECTSI5.260e-5468.22Peptidase aspartic, catalytic UBA-like n=1 Tax=Ect... [more]
A0A3F2S3S5_9STRA4.120e-3445.45Ubiquitin-like domain-containing protein n=3 Tax=P... [more]
A0A329SNU4_9STRA8.470e-3444.80Uncharacterized protein n=44 Tax=Phytophthora TaxI... [more]
A0A6A3UPT6_9STRA3.370e-3344.80Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
K3WH90_GLOUD3.480e-3345.60Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3P7MB80_DIBLA8.030e-3345.60Asp_protease domain-containing protein n=1 Tax=Dib... [more]
A0A0P1A6M1_PLAHL8.290e-3346.40Dna damage-inducible protein n=1 Tax=Plasmopara ha... [more]
K2RM22_MACPH8.980e-3344.80Ubiquitin-associated/translation elongation factor... [more]
A0A4Q1BI95_TREME1.210e-3250.40DNA damage-inducible protein 1 n=1 Tax=Tremella me... [more]
A0A1Y3BPI3_EURMA2.270e-3247.20Rings lost / DNA-damage inducible protein ddi1-lik... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5399contigP-wetherbeei_contig5399:2653..3425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQW7
PFAMsAsp_protease,DUF2781,UBA,ubiquitin
Model size459
Max annot lvl2759|Eukaryota
KEGG koko:K11885
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0098827
Exons3
Evalue8.62e-55
EggNOG OGsKOG0012@1|root,KOG0012@2759|Eukaryota
Ec32 ortholog descriptionAspartic peptidase, DDI1-type
Ec32 orthologEc-07_001890.1
Descriptionaspartic-type endopeptidase activity
Cds size459
COG categoryO
BRITEko00000,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186806.561513-CDS-P-wetherbeei_contig5399:2652..29321683186806.561513-CDS-P-wetherbeei_contig5399:2652..2932Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5399 2653..2932 -
1683186806.5731883-CDS-P-wetherbeei_contig5399:3078..31761683186806.5731883-CDS-P-wetherbeei_contig5399:3078..3176Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5399 3079..3176 -
1683186806.5824451-CDS-P-wetherbeei_contig5399:3344..34251683186806.5824451-CDS-P-wetherbeei_contig5399:3344..3425Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5399 3345..3425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5399.1.1prot_P-wetherbeei_contig5399.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5399 2653..3425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5399.1.1

>prot_P-wetherbeei_contig5399.1.1 ID=prot_P-wetherbeei_contig5399.1.1|Name=mRNA_P-wetherbeei_contig5399.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
MRDSGMLFVDCEVNGRVMRAFIDTGAEVTVISAACAERCGLSEHIDRRFA
GRAIGVGSATILGRIHDVSLRLGTACLPCSLAVIDHSEMDLLVGLDVLRR
YRCDISLSNNSMRFSAAGCLREIAFLTRLEGKAATRNGRNGRDAGGVAGW
AGR
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mRNA from alignment at P-wetherbeei_contig5399:2653..3425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5399.1.1 ID=mRNA_P-wetherbeei_contig5399.1.1|Name=mRNA_P-wetherbeei_contig5399.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=773bp|location=Sequence derived from alignment at P-wetherbeei_contig5399:2653..3425- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGACTCTGGCATGCTCTTCGTGGATTGCGAAGTGAATGGCCGGGT GATGCGGGCTTTCATTGACACCGGCGCCGAGGTAAATCGAGACCAAAGTA ACCTTTCTTTCTCGTCTGCCAGTGCCATGGACGTCCTATCTGTCCACGCA GACAAATCTGTTTCATTTAGGAACATTGTCTGAAAAGAGTCGCACCTTTG GCTTGTGCCTTGCCAAACCCATTTCCTTGCCTCTTTTTTATCACTGCAGG TGACGGTGATTTCGGCTGCTTGCGCCGAGCGCTGCGGGCTGTCGGAGCAC ATCGACCGGCGCTTTGCGGGCCGCGCCATTGGCGTGGGCTCTGCCACGTG AGTAATCTACCTGTGCCTTGTCTCCGTTTACTTGTTTTCACGTGCAAGCG GCATCGGCAAATTCCTCTCTGCGTCCTCTCTCAGTGTGATGCGGCGGCGG CGCTTCTTTTCTCTCGGAACGCCGCAAATTTACGCATGTTCAGGATCCTG GGGCGGATCCACGACGTGTCGCTGCGGCTGGGCACGGCCTGCCTGCCGTG CTCCCTGGCGGTAATTGACCACTCCGAGATGGATCTCCTCGTGGGTCTCG ACGTCCTCCGGCGCTACCGCTGCGACATCAGCCTCTCCAACAACTCGATG CGCTTCAGTGCCGCCGGCTGCCTCCGAGAGATCGCCTTCCTCACCCGCCT CGAGGGCAAGGCAGCAACAAGGAACGGCCGCAATGGACGCGATGCCGGCG GCGTTGCAGGCTGGGCGGGCCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5399:2653..3425-

>mRNA_P-wetherbeei_contig5399.1.1 ID=mRNA_P-wetherbeei_contig5399.1.1|Name=mRNA_P-wetherbeei_contig5399.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig5399:2653..3425- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGACTCTGGCATGCTCTTCGTGGATTGCGAAGTGAATGGCCGGGT
GATGCGGGCTTTCATTGACACCGGCGCCGAGGTGACGGTGATTTCGGCTG
CTTGCGCCGAGCGCTGCGGGCTGTCGGAGCACATCGACCGGCGCTTTGCG
GGCCGCGCCATTGGCGTGGGCTCTGCCACGATCCTGGGGCGGATCCACGA
CGTGTCGCTGCGGCTGGGCACGGCCTGCCTGCCGTGCTCCCTGGCGGTAA
TTGACCACTCCGAGATGGATCTCCTCGTGGGTCTCGACGTCCTCCGGCGC
TACCGCTGCGACATCAGCCTCTCCAACAACTCGATGCGCTTCAGTGCCGC
CGGCTGCCTCCGAGAGATCGCCTTCCTCACCCGCCTCGAGGGCAAGGCAG
CAACAAGGAACGGCCGCAATGGACGCGATGCCGGCGGCGTTGCAGGCTGG
GCGGGCCGA
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