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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1654 |
| Hectar predicted targeting category | signal peptide |
| Exons | 3 |
| Cds size | 840 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186806.312017-UTR-P-wetherbeei_contig5396:828..1625 | 1683186806.312017-UTR-P-wetherbeei_contig5396:828..1625 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig5396 829..1625 - |
| 1683186806.3465195-UTR-P-wetherbeei_contig5396:3198..3215 | 1683186806.3465195-UTR-P-wetherbeei_contig5396:3198..3215 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig5396 3199..3215 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186806.3205369-CDS-P-wetherbeei_contig5396:1625..2124 | 1683186806.3205369-CDS-P-wetherbeei_contig5396:1625..2124 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig5396 1626..2124 - |
| 1683186806.328583-CDS-P-wetherbeei_contig5396:2538..2669 | 1683186806.328583-CDS-P-wetherbeei_contig5396:2538..2669 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig5396 2539..2669 - |
| 1683186806.3380265-CDS-P-wetherbeei_contig5396:2988..3198 | 1683186806.3380265-CDS-P-wetherbeei_contig5396:2988..3198 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig5396 2989..3198 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5396.2.1 >prot_P-wetherbeei_contig5396.2.1 ID=prot_P-wetherbeei_contig5396.2.1|Name=mRNA_P-wetherbeei_contig5396.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=280bp
MHLKLTGSLHTLALLLWERGKLGQALPLLCRVTYILAGSLGEEHPRYAAA
LNDVALLLKQAGNLQDAEPLLWRSLEIIEKSYGREHPLYATGLYNISCLM
ISLGRDEEAEAMLREAVSLSEPEVGSDHADVLRFKSALAAVLRQRRRLRE
ARDLYAHVARESRGGCARLYWGAKRQLDEIDRLIAAGGADAEDSADGFDG
VSDSSSGECVVAVAADAGGCRAGGGGGGSGCGGSGGDGGIGGVGQSGDAG
CGCSGGVGGMSGAGSISGSGGGSGGAGRR* back to topmRNA from alignment at P-wetherbeei_contig5396:829..3215- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig5396.2.1 ID=mRNA_P-wetherbeei_contig5396.2.1|Name=mRNA_P-wetherbeei_contig5396.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2387bp|location=Sequence derived from alignment at P-wetherbeei_contig5396:829..3215- (Phaeothamnion wetherbeei SAG_119_79)
AGGTGACGTACGGCGAGATGCACCTAAAGCTGACGGGCTCCCTCCACACG
CTGGCGTTGCTGCTGTGGGAGCGCGGCAAGCTCGGGCAGGCGCTGCCATT
GTTGTGCCGCGTCACATACATCTTGGCGGGGTCGCTTGGGGAGGAGCACC
CGCGCTACGCCGCCGCGCTCAACGACGTGGCACTGCTGCTCAAGCAGGCG
GGCAATCTGCAGGACGCCGAGCCACTGGTGAGCGGCTTGGACGAGGGACG
AGGCGAGGGAAGGGAACGGCAGCTATATGTGGAATTAGAGGCTCGCTCTG
TCGCGGGGGAAAAAGGAGGGCTTCGGAGCAACTTTTTTATTCTTTTCCGG
TGCTGGCTGCCACCAGCGCCGCCGCTGCCGTCGCTGGTGGCGATGTCGAC
GTTGTCGTCGTTGTTTGGTGCTGCCGCTGTCGCTACTGCTGCGGCCGCTG
CTGCTGCTGACGCCATCTCTCGACGCCTTCCGCGCAACCTACCTCACCGC
CCGTCCACTCTTTGCCCTGCCCCGCGGCTGCCTCTGCCCGTTGCAGCTGT
GGCGCAGCCTGGAGATTATCGAAAAGTCATACGGTCGGGAGCACCCGCTG
TACGCGACGGGGCTCTACAATATCTCCTGCCTAATGATCAGCTTGGGTCG
CGACGAGGAGGCCGAGGCCATGCTCAGGTGATTCGTGTTAGAGATGCGAA
CTCACGTGCCGCCAGTGATGATGGGCGGCGAGCAGCCCGGTTTTGTTGCA
AGCGAATTGGTTCAAGTGTTTCGATATTAACGCGCGCTTGTTTAGAGGGC
GAGGCATTGGTTTTGGTTCTTGCGGCGATCGGCGGACGGTCGATGGTGTT
TTTGCCGCTGCGACTCGGAGTACGTCATTGTTGCTTCATTCTATTCTGCA
GCAGCCGTTCTTTCAATCCGCGGATGTTTTGTCCATCAGCGTCTTCCATC
AAATTTGCCGTCCAGCCACAGCCGTTGCCACCGGTTCTATGGTCATCTTC
GCCTCCTCATATTGCTGCAACTCGATCGACCTTCCGGCTCGTCAAATCCT
GCTGCTCCCTGCTTTTCCTGTCGCTCTGCTGGCACCTGCAGGGAGGCTGT
GTCGCTGTCGGAGCCCGAGGTCGGGTCCGACCACGCGGACGTCTTGCGCT
TCAAGTCTGCGCTGGCGGCGGTGCTACGGCAGCGCCGGCGGTTGCGCGAG
GCCCGCGACCTCTACGCCCACGTCGCACGCGAGTCGCGCGGCGGGTGCGC
CCGCCTCTACTGGGGCGCCAAACGCCAGCTCGACGAGATTGACCGCCTGA
TTGCTGCGGGCGGCGCCGATGCCGAGGACAGTGCCGACGGTTTCGATGGC
GTTAGCGACAGCAGCAGCGGTGAGTGCGTTGTCGCTGTTGCGGCTGATGC
TGGGGGCTGCCGCGCTGGCGGCGGTGGCGGCGGCAGCGGCTGCGGCGGCA
GTGGTGGCGATGGCGGCATCGGCGGTGTCGGTCAATCCGGCGACGCGGGC
TGCGGCTGCAGCGGTGGCGTTGGCGGGATGAGCGGAGCTGGCAGCATTAG
CGGAAGTGGTGGCGGTAGCGGCGGTGCCGGCCGCCGCTAACGCAAAACGG
CACCGGTGAGACGGCGGTCCCAAATGCCAATCACGATTGTTCAGGCGCCA
TGGGCGCTCGGCGCGGTGGGGACTGGACCCCACGCACCTTTGACGTGCCC
GAAAGGCGCACAATTCATTGATGGCGGATAGAGCGCCAAGGAAGGGGCGG
GGGGAGTATAGTTATCGAAGGGAAGAGGAATGGAGGCTGTTCGTTGGGCA
TGTTCCATTCGGCAAGAGAGATGGGCAATAGCTATCTTGTGGTGCGGCAG
CGTCAAGAGCCAATCATTGCATAGCATGATAGGGATCGCGGGGAAGCGGC
ACCAGAACCGCCTGTATAGTAGCCTTCCGGAATATGTATGTACCAAAAGA
ACAGTTGCAACACGCCGCGACTCGCCGGCAGCGGCGGAGAAACAGAAGAC
GCGTCCGGAGGAACGGGCGGTTGTTGCACAGCACAGAAACCACCACCACT
CACGATCGGCGCCTGGGGCGGGCGGCAGCGGCGGAGTTGGAAAATGGAAC
TTTCCATAATGTCGGCGGCGCCATCGCGCCGTTGCCGGCGGCGCTGTGCC
GTGCCACGGGAGCATTTCATGTAGAGGCGTGGCACAAAAGACTGGCAGCG
GGGCGATAATTGGTTTGGAGGACAGTGGCGGGAGCGGGAAAACGATGGGG
ACGAGCTGGCCGCCAAAGGAAGCAGAAACAAGGAGAGAGTGCGTCAGCAC
CATGGGCGCGCACTGTAGAGAAGCTACGCTGCTGGGGGAAAGTGCATTCT
TAGTGGGTTTACTACATACAAATGTCGTTGCGCAGGC back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig5396:829..3215- >mRNA_P-wetherbeei_contig5396.2.1 ID=mRNA_P-wetherbeei_contig5396.2.1|Name=mRNA_P-wetherbeei_contig5396.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig5396:829..3215- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACCTAAAGCTGACGGGCTCCCTCCACACGCTGGCGTTGCTGCTGTG
GGAGCGCGGCAAGCTCGGGCAGGCGCTGCCATTGTTGTGCCGCGTCACAT
ACATCTTGGCGGGGTCGCTTGGGGAGGAGCACCCGCGCTACGCCGCCGCG
CTCAACGACGTGGCACTGCTGCTCAAGCAGGCGGGCAATCTGCAGGACGC
CGAGCCACTGCTGTGGCGCAGCCTGGAGATTATCGAAAAGTCATACGGTC
GGGAGCACCCGCTGTACGCGACGGGGCTCTACAATATCTCCTGCCTAATG
ATCAGCTTGGGTCGCGACGAGGAGGCCGAGGCCATGCTCAGGGAGGCTGT
GTCGCTGTCGGAGCCCGAGGTCGGGTCCGACCACGCGGACGTCTTGCGCT
TCAAGTCTGCGCTGGCGGCGGTGCTACGGCAGCGCCGGCGGTTGCGCGAG
GCCCGCGACCTCTACGCCCACGTCGCACGCGAGTCGCGCGGCGGGTGCGC
CCGCCTCTACTGGGGCGCCAAACGCCAGCTCGACGAGATTGACCGCCTGA
TTGCTGCGGGCGGCGCCGATGCCGAGGACAGTGCCGACGGTTTCGATGGC
GTTAGCGACAGCAGCAGCGGTGAGTGCGTTGTCGCTGTTGCGGCTGATGC
TGGGGGCTGCCGCGCTGGCGGCGGTGGCGGCGGCAGCGGCTGCGGCGGCA
GTGGTGGCGATGGCGGCATCGGCGGTGTCGGTCAATCCGGCGACGCGGGC
TGCGGCTGCAGCGGTGGCGTTGGCGGGATGAGCGGAGCTGGCAGCATTAG
CGGAAGTGGTGGCGGTAGCGGCGGTGCCGGCCGCCGCTAA back to top
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