mRNA_P-wetherbeei_contig53959.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53959.1.1
Unique NamemRNA_P-wetherbeei_contig53959.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53959.1.1 vs. uniprot
Match: A0A6L6AM30_9ACTN (Catechol 1,2-dioxygenase n=4 Tax=root TaxID=1 RepID=A0A6L6AM30_9ACTN)

HSP 1 Score: 338 bits (868), Expect = 5.450e-116
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1
Query:    1 MSTTVNETATAAASGASATERFHADKSPYDAVKDVPCERVDAMAREVLEAVYATVRKHKMTYAEFNALKAWMIDVGEDGEWPLFLDVWLEHVVEEVNTEHREGNKGSIEGPYYVPEAPEHGAHGTISMRDDEGGTPLTWSGRVTSTDGSVLGGAKVELWHADSDGF 498
            MSTTVNETATAAASGASATERFHADKSPYDAVKDVPCERVDAMAREVLEAVYATVRKHKMTYAEFNALKAWMIDVGEDGEWPLFLDVWLEHVVEEVNTEHREGNKGSIEGPYYVPEAPEHGAHGTISMRDDEGGTPLTWSGRVTSTDGSVLGGAKVELWHADSDGF
Sbjct:    1 MSTTVNETATAAASGASATERFHADKSPYDAVKDVPCERVDAMAREVLEAVYATVRKHKMTYAEFNALKAWMIDVGEDGEWPLFLDVWLEHVVEEVNTEHREGNKGSIEGPYYVPEAPEHGAHGTISMRDDEGGTPLTWSGRVTSTDGSVLGGAKVELWHADSDGF 166          
BLAST of mRNA_P-wetherbeei_contig53959.1.1 vs. uniprot
Match: A0A4Q2S7N7_9ACTN (Catechol 1,2-dioxygenase n=3 Tax=Nocardioides TaxID=1839 RepID=A0A4Q2S7N7_9ACTN)

HSP 1 Score: 313 bits (801), Expect = 8.530e-106
Identity = 152/166 (91.57%), Postives = 159/166 (95.78%), Query Frame = 1
Query:    1 MSTTVNETATAAASGASATERFHADKSPYDAVKDVPCERVDAMAREVLEAVYATVRKHKMTYAEFNALKAWMIDVGEDGEWPLFLDVWLEHVVEEVNTEHREGNKGSIEGPYYVPEAPEHGAHGTISMRDDEGGTPLTWSGRVTSTDGSVLGGAKVELWHADSDGF 498
            MSTT++E ATAAASGASATERFHADKSPYDAVKDVP ERVDAMAREVLEA++ATVRKHKMTY EFNALKAWMIDVG+DGEWPLFLDVWLEHVVEEVNTEHREGNKGSIEGPYYVP APE GA GTI MRDDEGGTPLTWSGR+TSTDGSVLGGAKVELWHAD+DGF
Sbjct:    1 MSTTLHEAATAAASGASATERFHADKSPYDAVKDVPAERVDAMAREVLEAIHATVRKHKMTYDEFNALKAWMIDVGQDGEWPLFLDVWLEHVVEEVNTEHREGNKGSIEGPYYVPNAPEQGAEGTIPMRDDEGGTPLTWSGRITSTDGSVLGGAKVELWHADADGF 166          
BLAST of mRNA_P-wetherbeei_contig53959.1.1 vs. uniprot
Match: A0A6G7YHJ4_9ACTN (Catechol 1,2-dioxygenase n=2 Tax=Nocardioides TaxID=1839 RepID=A0A6G7YHJ4_9ACTN)

HSP 1 Score: 298 bits (764), Expect = 3.610e-100
Identity = 145/166 (87.35%), Postives = 154/166 (92.77%), Query Frame = 1
Query:    1 MSTTVNETATAAASGASATERFHADKSPYDAVKDVPCERVDAMAREVLEAVYATVRKHKMTYAEFNALKAWMIDVGEDGEWPLFLDVWLEHVVEEVNTEHREGNKGSIEGPYYVPEAPEHGAHGTISMRDDEGGTPLTWSGRVTSTDGSVLGGAKVELWHADSDGF 498
            MSTT +E ATAAASGASATERFH DKSPYDAV+DVP ERVD +AREVL+AV+A VRKHK+TY EFNALKAWMIDVGEDGEWPLFLDVWLEHVVEEVNTEHREGNKGSIEGPYYVP+APE GA GTI MR+ EGGTPLTW+GRVTSTDGS LGGAKVELWHADSDGF
Sbjct:    1 MSTTAHEAATAAASGASATERFHTDKSPYDAVRDVPAERVDTLAREVLDAVHAVVRKHKVTYDEFNALKAWMIDVGEDGEWPLFLDVWLEHVVEEVNTEHREGNKGSIEGPYYVPDAPEQGATGTIPMREGEGGTPLTWTGRVTSTDGSALGGAKVELWHADSDGF 166          
BLAST of mRNA_P-wetherbeei_contig53959.1.1 vs. uniprot
Match: A0A2P2CCL6_9ZZZZ (Catechol 1,2-dioxygenase n=6 Tax=root TaxID=1 RepID=A0A2P2CCL6_9ZZZZ)

HSP 1 Score: 291 bits (744), Expect = 4.840e-97
Identity = 143/172 (83.14%), Postives = 156/172 (90.70%), Query Frame = 1
Query:    1 MSTTVNET------ATAAASGASATERFHADKSPYDAVKDVPCERVDAMAREVLEAVYATVRKHKMTYAEFNALKAWMIDVGEDGEWPLFLDVWLEHVVEEVNTEHREGNKGSIEGPYYVPEAPEHGAHGTISMRDDEGGTPLTWSGRVTSTDGSVLGGAKVELWHADSDGF 498
            MSTTVNE+      A+AAASGASATERFHADKSP+DAVKDVP ERVD +AREVLEA+Y+TVRKHK+TYAEFNALKAW+I+VGEDGEWPLFLDVWLEHVVE+V TEHREGNKGSIEGPYYVP+APE GA GTI MR+DEGGTPL WSG+VTS DGS LGGAKVELWHAD DGF
Sbjct:    1 MSTTVNESQTEAEKASAAASGASATERFHADKSPFDAVKDVPAERVDTLAREVLEAIYSTVRKHKVTYAEFNALKAWLINVGEDGEWPLFLDVWLEHVVEDVATEHREGNKGSIEGPYYVPDAPEQGAKGTIPMREDEGGTPLVWSGQVTSCDGSALGGAKVELWHADDDGF 172          
BLAST of mRNA_P-wetherbeei_contig53959.1.1 vs. uniprot
Match: A0A0Q8PX93_9ACTN (Catechol 1,2-dioxygenase n=1 Tax=Nocardioides sp. Root190 TaxID=1736488 RepID=A0A0Q8PX93_9ACTN)

HSP 1 Score: 290 bits (741), Expect = 1.210e-96
Identity = 142/168 (84.52%), Postives = 153/168 (91.07%), Query Frame = 1
Query:    1 MSTTVNET--ATAAASGASATERFHADKSPYDAVKDVPCERVDAMAREVLEAVYATVRKHKMTYAEFNALKAWMIDVGEDGEWPLFLDVWLEHVVEEVNTEHREGNKGSIEGPYYVPEAPEHGAHGTISMRDDEGGTPLTWSGRVTSTDGSVLGGAKVELWHADSDGF 498
            MSTTV+ET  ATAAASGASATERFH DKSPYDAVKDVPCERVD +AREVL+A+YATVRKHK+TYAEFNALKAW+I VGEDGEWPLFLDVWLEHVVE+VNTEHREGNKGSIEGPYYVP APE GA GT+ MR DE GTPL W+G VT+TDGSVL GAKVE+WHADSDG 
Sbjct:    1 MSTTVSETGTATAAASGASATERFHTDKSPYDAVKDVPCERVDLLAREVLDALYATVRKHKVTYAEFNALKAWVISVGEDGEWPLFLDVWLEHVVEDVNTEHREGNKGSIEGPYYVPNAPEQGADGTVPMRADESGTPLLWTGTVTATDGSVLAGAKVEIWHADSDGL 168          
BLAST of mRNA_P-wetherbeei_contig53959.1.1 vs. uniprot
Match: A0A0A1DIH9_NOCSI (Catechol 1,2-dioxygenase n=3 Tax=Nocardioidaceae TaxID=85015 RepID=A0A0A1DIH9_NOCSI)

HSP 1 Score: 262 bits (669), Expect = 8.930e-86
Identity = 130/160 (81.25%), Postives = 137/160 (85.62%), Query Frame = 1
Query:   19 ETATAAASGASATERFHADKSPYDAVKDVPCERVDAMAREVLEAVYATVRKHKMTYAEFNALKAWMIDVGEDGEWPLFLDVWLEHVVEEVNTEHREGNKGSIEGPYYVPEAPEHGAHGTISMRDDEGGTPLTWSGRVTSTDGSVLGGAKVELWHADSDGF 498
            E ATAAASGASATERFH+DKSPY AVKD P ERVD +AR VLEAVY TVR  K+TY EFNALKAWMI VGEDGEWPLFLDVWLEHVVE+VNT HREGNKGSIEGPYYVP APE GA GTI MR+ E GTPL W+G VTSTDG+ L GA VELWHADSDGF
Sbjct:    4 EVATAAASGASATERFHSDKSPYAAVKDTPPERVDRLARRVLEAVYQTVRDEKVTYDEFNALKAWMIGVGEDGEWPLFLDVWLEHVVEDVNTAHREGNKGSIEGPYYVPGAPEQGAKGTIEMREGEAGTPLAWTGTVTSTDGTPLDGALVELWHADSDGF 163          
BLAST of mRNA_P-wetherbeei_contig53959.1.1 vs. uniprot
Match: UPI00112E4772 (catechol 1,2-dioxygenase n=1 Tax=Nocardioides humi TaxID=449461 RepID=UPI00112E4772)

HSP 1 Score: 262 bits (669), Expect = 1.020e-85
Identity = 125/163 (76.69%), Postives = 146/163 (89.57%), Query Frame = 1
Query:   10 TVNETATAAASGASATERFHADKSPYDAVKDVPCERVDAMAREVLEAVYATVRKHKMTYAEFNALKAWMIDVGEDGEWPLFLDVWLEHVVEEVNTEHREGNKGSIEGPYYVPEAPEHGAHGTISMRDDEGGTPLTWSGRVTSTDGSVLGGAKVELWHADSDGF 498
            T +E ATAAASGASATERFH DKSP+ AV+D P ERVDA+AR+VL AV+AT+R+ +++Y E+NALKAWMI+VGEDGEWPLFLDVW+EHVVEEVNT+HREG+KG+IEGPYYVP+APE GA GTI+MRD E GTP+ WSG+VTST GS LGGA VELWHADSDGF
Sbjct:    5 TTHEVATAAASGASATERFHTDKSPFAAVRDTPPERVDALARKVLAAVHATIREERVSYDEYNALKAWMINVGEDGEWPLFLDVWVEHVVEEVNTDHREGSKGTIEGPYYVPDAPERGARGTIAMRDGEAGTPMLWSGQVTSTHGSPLGGAVVELWHADSDGF 167          
BLAST of mRNA_P-wetherbeei_contig53959.1.1 vs. uniprot
Match: A0A1E3RQY5_MYCFV (Catechol 1,2-dioxygenase n=1 Tax=Mycolicibacterium flavescens TaxID=1776 RepID=A0A1E3RQY5_MYCFV)

HSP 1 Score: 256 bits (654), Expect = 2.400e-83
Identity = 122/160 (76.25%), Postives = 141/160 (88.12%), Query Frame = 1
Query:   19 ETATAAASGASATERFHADKSPYDAVKDVPCERVDAMAREVLEAVYATVRKHKMTYAEFNALKAWMIDVGEDGEWPLFLDVWLEHVVEEVNTEHREGNKGSIEGPYYVPEAPEHGAHGTISMRDDEGGTPLTWSGRVTSTDGSVLGGAKVELWHADSDGF 498
            +TA+AAASGASATERFHADKSPYDAV+D P ERVD +AREVL AV+ T+R+H++TY E+NALKAW+IDVG DGEWPLFLDVW+EHVVEEV T+HR GNKGSIEGPYYVP +PE GA GTI MRD+E GTPL W GR+T+TDG+ L G KVELWHAD+DGF
Sbjct:   14 QTASAAASGASATERFHADKSPYDAVRDTPAERVDLLAREVLSAVHDTIRRHRVTYDEYNALKAWLIDVGNDGEWPLFLDVWVEHVVEEVATDHRSGNKGSIEGPYYVPGSPERGARGTIPMRDNEQGTPLVWEGRITATDGTPLPG-KVELWHADADGF 172          
BLAST of mRNA_P-wetherbeei_contig53959.1.1 vs. uniprot
Match: UPI001CBDA24E (catechol 1,2-dioxygenase n=1 Tax=Nocardioides rotundus TaxID=1774216 RepID=UPI001CBDA24E)

HSP 1 Score: 254 bits (648), Expect = 1.470e-82
Identity = 119/162 (73.46%), Postives = 145/162 (89.51%), Query Frame = 1
Query:   13 VNETATAAASGASATERFHADKSPYDAVKDVPCERVDAMAREVLEAVYATVRKHKMTYAEFNALKAWMIDVGEDGEWPLFLDVWLEHVVEEVNTEHREGNKGSIEGPYYVPEAPEHGAHGTISMRDDEGGTPLTWSGRVTSTDGSVLGGAKVELWHADSDGF 498
            ++ETATAAASGASATERFHADKSP++AVKD P ERVDA+AR VL++VYAT+R+ ++TY E+NALKAW+I+VG+DGEWPLFLDVW+EHVVEEV T+HREG+KG+IEGPYYVP APE GA  ++ MR++E GTPL W+G +TSTDG+ L GA VELWHADSDGF
Sbjct:    1 MSETATAAASGASATERFHADKSPFEAVKDTPPERVDALARAVLDSVYATIREQRVTYDEYNALKAWLINVGQDGEWPLFLDVWVEHVVEEVATDHREGSKGTIEGPYYVPGAPERGAKASVPMRENEAGTPLHWTGTITSTDGTPLEGASVELWHADSDGF 162          
BLAST of mRNA_P-wetherbeei_contig53959.1.1 vs. uniprot
Match: A0A448I9P2_MYCCI (Catechol 1,2-dioxygenase n=1 Tax=Mycolicibacterium chitae TaxID=1792 RepID=A0A448I9P2_MYCCI)

HSP 1 Score: 253 bits (647), Expect = 2.220e-82
Identity = 120/160 (75.00%), Postives = 144/160 (90.00%), Query Frame = 1
Query:   19 ETATAAASGASATERFHADKSPYDAVKDVPCERVDAMAREVLEAVYATVRKHKMTYAEFNALKAWMIDVGEDGEWPLFLDVWLEHVVEEVNTEHREGNKGSIEGPYYVPEAPEHGAHGTISMRDDEGGTPLTWSGRVTSTDGSVLGGAKVELWHADSDGF 498
            E A+AAASGASATERFHADKSP++AVKD P ERVD +AREVL+AV+AT+RKHK++Y E+NALKAW+I+VG+DGEWPLFLDVW+EHVVEEV T+HR+GNKGSIEGPYYVP++PE GA GT+ MR++E GTPL W GR+TSTDG  L G K+ELWHAD+DGF
Sbjct:    9 EHASAAASGASATERFHADKSPFEAVKDTPPERVDMLAREVLDAVHATIRKHKVSYDEYNALKAWLINVGQDGEWPLFLDVWVEHVVEEVATDHRQGNKGSIEGPYYVPDSPELGAVGTMPMRENEAGTPLVWDGRITSTDGKPLAG-KIELWHADADGF 167          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53959.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L6AM30_9ACTN5.450e-116100.00Catechol 1,2-dioxygenase n=4 Tax=root TaxID=1 RepI... [more]
A0A4Q2S7N7_9ACTN8.530e-10691.57Catechol 1,2-dioxygenase n=3 Tax=Nocardioides TaxI... [more]
A0A6G7YHJ4_9ACTN3.610e-10087.35Catechol 1,2-dioxygenase n=2 Tax=Nocardioides TaxI... [more]
A0A2P2CCL6_9ZZZZ4.840e-9783.14Catechol 1,2-dioxygenase n=6 Tax=root TaxID=1 RepI... [more]
A0A0Q8PX93_9ACTN1.210e-9684.52Catechol 1,2-dioxygenase n=1 Tax=Nocardioides sp. ... [more]
A0A0A1DIH9_NOCSI8.930e-8681.25Catechol 1,2-dioxygenase n=3 Tax=Nocardioidaceae T... [more]
UPI00112E47721.020e-8576.69catechol 1,2-dioxygenase n=1 Tax=Nocardioides humi... [more]
A0A1E3RQY5_MYCFV2.400e-8376.25Catechol 1,2-dioxygenase n=1 Tax=Mycolicibacterium... [more]
UPI001CBDA24E1.470e-8273.46catechol 1,2-dioxygenase n=1 Tax=Nocardioides rotu... [more]
A0A448I9P2_MYCCI2.220e-8275.00Catechol 1,2-dioxygenase n=1 Tax=Mycolicibacterium... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53959contigP-wetherbeei_contig53959:3..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog110319.CF8_0571
Preferred namecatA
PFAMsDioxygenase_C,Dioxygenase_N
Model size498
Max annot lvl201174|Actinobacteria
KEGG rclassRC00388,RC00535,RC01366
KEGG koko:K03381
KEGG ReactionR00817,R04258,R05299,R08114,R08115,R09134
KEGG Pathwayko00361,ko00362,ko00364,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00364,map00623,map01100,map01120,map01220
KEGG ModuleM00568
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.25e-102
EggNOG OGsCOG3485@1|root,COG3485@2|Bacteria,2GNNC@201174|Actinobacteria,4DQ55@85009|Propionibacteriales
EC1.13.11.1
DescriptionCatechol dioxygenase N terminus
Cds size498
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186806.2874002-CDS-P-wetherbeei_contig53959:2..5001683186806.2874002-CDS-P-wetherbeei_contig53959:2..500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53959 3..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53959.1.1prot_P-wetherbeei_contig53959.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53959 3..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53959.1.1

>prot_P-wetherbeei_contig53959.1.1 ID=prot_P-wetherbeei_contig53959.1.1|Name=mRNA_P-wetherbeei_contig53959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MSTTVNETATAAASGASATERFHADKSPYDAVKDVPCERVDAMAREVLEA
VYATVRKHKMTYAEFNALKAWMIDVGEDGEWPLFLDVWLEHVVEEVNTEH
REGNKGSIEGPYYVPEAPEHGAHGTISMRDDEGGTPLTWSGRVTSTDGSV
LGGAKVELWHADSDGF
back to top

mRNA from alignment at P-wetherbeei_contig53959:3..500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53959.1.1 ID=mRNA_P-wetherbeei_contig53959.1.1|Name=mRNA_P-wetherbeei_contig53959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig53959:3..500- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCACCACCGTCAACGAGACCGCCACCGCCGCGGCGTCCGGCGCCAG CGCGACCGAGCGCTTCCACGCCGACAAGTCCCCCTACGACGCCGTCAAGG ACGTCCCGTGCGAGCGGGTCGACGCCATGGCCAGAGAGGTGCTGGAGGCG GTCTACGCCACGGTCCGCAAGCACAAGATGACCTACGCCGAGTTCAACGC CCTCAAGGCGTGGATGATCGACGTCGGGGAGGACGGCGAGTGGCCGCTGT TCCTCGACGTGTGGCTCGAGCACGTCGTCGAGGAGGTCAACACCGAGCAC CGCGAGGGCAACAAGGGCTCCATCGAGGGCCCCTACTACGTGCCGGAGGC TCCCGAGCACGGCGCCCACGGCACCATCTCGATGCGCGACGACGAGGGCG GCACCCCGCTGACCTGGTCGGGCCGGGTCACCTCCACGGACGGCTCCGTC CTCGGTGGCGCCAAGGTCGAGCTCTGGCACGCCGACTCCGACGGCTTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig53959:3..500-

>mRNA_P-wetherbeei_contig53959.1.1 ID=mRNA_P-wetherbeei_contig53959.1.1|Name=mRNA_P-wetherbeei_contig53959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig53959:3..500- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCACCACCGTCAACGAGACCGCCACCGCCGCGGCGTCCGGCGCCAG
CGCGACCGAGCGCTTCCACGCCGACAAGTCCCCCTACGACGCCGTCAAGG
ACGTCCCGTGCGAGCGGGTCGACGCCATGGCCAGAGAGGTGCTGGAGGCG
GTCTACGCCACGGTCCGCAAGCACAAGATGACCTACGCCGAGTTCAACGC
CCTCAAGGCGTGGATGATCGACGTCGGGGAGGACGGCGAGTGGCCGCTGT
TCCTCGACGTGTGGCTCGAGCACGTCGTCGAGGAGGTCAACACCGAGCAC
CGCGAGGGCAACAAGGGCTCCATCGAGGGCCCCTACTACGTGCCGGAGGC
TCCCGAGCACGGCGCCCACGGCACCATCTCGATGCGCGACGACGAGGGCG
GCACCCCGCTGACCTGGTCGGGCCGGGTCACCTCCACGGACGGCTCCGTC
CTCGGTGGCGCCAAGGTCGAGCTCTGGCACGCCGACTCCGACGGCTTC
back to top