mRNA_P-wetherbeei_contig53941.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53941.2.1
Unique NamemRNA_P-wetherbeei_contig53941.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53941.2.1 vs. uniprot
Match: A0A7V3XBP1_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3XBP1_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 4.510e-13
Identity = 34/93 (36.56%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:    1 LLDRSHYIVQWVGDAGTGTGYC--MKTFTTSEGHKLYARCDSKDNPKGSTGTVTLLGGTGPFAGIKGKGKFNFVAVTD-RVFWDDIEWEWEMP 270
             LD++ Y V + GD   GTG     KTFT  +G +++ +   + +    +GT TL+GG+G + G+KGKG +++  + D +V WD +E E+E+P
Sbjct:   74 FLDKARYQVVFRGDVIKGTGKTEGYKTFTMPDGAQIFVKYMGEGSNNRESGTFTLIGGSGKYQGVKGKGTYDWTGIKDTKVSWDILEGEYELP 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53941.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7V3XBP1_9BACT4.510e-1336.56Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53941contigP-wetherbeei_contig53941:179..451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog318996.AXAZ01000090_gene5783
Model size273
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.1e-16
EggNOG OGs2AJCC@1|root,319XP@2|Bacteria,1NUQI@1224|Proteobacteria,2URSP@28211|Alphaproteobacteria,3K3ZM@41294|Bradyrhizobiaceae
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186806.1943078-CDS-P-wetherbeei_contig53941:178..4511683186806.1943078-CDS-P-wetherbeei_contig53941:178..451Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53941 179..451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53941.2.1prot_P-wetherbeei_contig53941.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53941 179..451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53941.2.1

>prot_P-wetherbeei_contig53941.2.1 ID=prot_P-wetherbeei_contig53941.2.1|Name=mRNA_P-wetherbeei_contig53941.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
LLDRSHYIVQWVGDAGTGTGYCMKTFTTSEGHKLYARCDSKDNPKGSTGT
VTLLGGTGPFAGIKGKGKFNFVAVTDRVFWDDIEWEWEMP*
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mRNA from alignment at P-wetherbeei_contig53941:179..451-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53941.2.1 ID=mRNA_P-wetherbeei_contig53941.2.1|Name=mRNA_P-wetherbeei_contig53941.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig53941:179..451- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGGACCGCTCGCACTACATTGTGCAATGGGTGGGCGACGCGGGAAC
CGGTACGGGTTACTGCATGAAGACCTTCACGACTTCCGAAGGCCACAAGC
TGTACGCGCGCTGTGACTCCAAGGACAACCCCAAGGGGTCCACCGGGACC
GTGACCTTGCTCGGCGGCACCGGACCCTTCGCCGGCATCAAGGGAAAGGG
CAAATTCAATTTCGTTGCGGTGACCGACCGCGTCTTCTGGGACGACATCG
AGTGGGAGTGGGAAATGCCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53941:179..451-

>mRNA_P-wetherbeei_contig53941.2.1 ID=mRNA_P-wetherbeei_contig53941.2.1|Name=mRNA_P-wetherbeei_contig53941.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig53941:179..451- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGGACCGCTCGCACTACATTGTGCAATGGGTGGGCGACGCGGGAAC
CGGTACGGGTTACTGCATGAAGACCTTCACGACTTCCGAAGGCCACAAGC
TGTACGCGCGCTGTGACTCCAAGGACAACCCCAAGGGGTCCACCGGGACC
GTGACCTTGCTCGGCGGCACCGGACCCTTCGCCGGCATCAAGGGAAAGGG
CAAATTCAATTTCGTTGCGGTGACCGACCGCGTCTTCTGGGACGACATCG
AGTGGGAGTGGGAAATGCCCTGA
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