mRNA_P-wetherbeei_contig53939.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53939.1.1
Unique NamemRNA_P-wetherbeei_contig53939.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53939.1.1 vs. uniprot
Match: A0A7V9VW85_9CHLR (DUF2357 domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VW85_9CHLR)

HSP 1 Score: 152 bits (384), Expect = 2.150e-40
Identity = 86/177 (48.59%), Postives = 106/177 (59.89%), Query Frame = 1
Query:    1 GYRELTRLWFALQRARQPLFDRLHHAIDMRDIATLYEYWVFFELAEQIGSAVGDRAVLG-SVGNDGL-ARGLTCAFGAVGTLVYNPTKKGYSGVWLRPDYLWLPSSGDAVAFDAKFRMTARPVSVADMVGQIPAGVAYDPKDDDLVKMHAYRDALG-VRAAVVLYPGTSATFRPVSG 522
            GYREL  LW   QR+R+P+F+++ +AI++R +  LYE WV FEL + I  A  ++ VL   V   G    G    FGA GTL Y+ TK  YSG+WLRPDYLW P+ GD V FDAKFRM     S  +  G+I        K++D  KMH YRD L  VRAAVVLYPG    FR   G
Sbjct:  328 GYRELNVLWQRFQRSREPIFEQMQNAIELRSVDKLYELWVLFELIDMIAVATDEKPVLTPEVDVFGTPVGGYRARFGARGTLRYDSTKVAYSGIWLRPDYLWKPAVGDWVVFDAKFRMDKPEESTDEETGEISYAGMVTSKNNDWQKMHTYRDGLTRVRAAVVLYPGEERKFRDTMG 504          
BLAST of mRNA_P-wetherbeei_contig53939.1.1 vs. uniprot
Match: A0A7C3QXZ9_9CHLR (DUF2357 domain-containing protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3QXZ9_9CHLR)

HSP 1 Score: 129 bits (325), Expect = 4.390e-33
Identity = 82/176 (46.59%), Postives = 101/176 (57.39%), Query Frame = 1
Query:    1 GYRELTRLWFALQRARQPLFDRLHHAIDMRDIATLYEYWVFFELAEQIGSAVGDRAVLGSVGND--GLARGLTCAFGAVGTLVYN-----PTKKGYSGVWLRPDYLWLPSSGDAVAFDAKFRMTARPVSVADMVGQIPAGVAYDPKDDDLVKMHAYRDALGVRAAVVLYPGTSATF 507
            GYRE+  LW   Q+AR+PLF  L  AI++RDIATLYE+WVFF L E+IG  +G+  V+    +D  GL       FG  GTLVY+     PT   YS + LRPD+ W+      V  DAKFR+    +   +     P   A   K  DL KMH YRDALGVRAAV +YPG  A F
Sbjct:  152 GYREMLALWRLFQQARRPLFAPLQQAIELRDIATLYEFWVFFALVEEIGVCLGESPVIDLRPSDKRGLEWHSEARFGEKGTLVYSRGFRRPTS--YS-LPLRPDFTWMVGGRPEVVLDAKFRLERAELEAGEEE-DTPQATA---KRADLYKMHTYRDALGVRAAVAVYPGDEAVF 320          
BLAST of mRNA_P-wetherbeei_contig53939.1.1 vs. uniprot
Match: A0A7C1JPY6_9BACT (DUF2357 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1JPY6_9BACT)

HSP 1 Score: 130 bits (327), Expect = 3.240e-32
Identity = 81/174 (46.55%), Postives = 99/174 (56.90%), Query Frame = 1
Query:    1 GYRELTRLWFALQRARQPLFDRLHHAIDMRDIATLYEYWVFFELAEQIGSAVGDRAVLGSVGND--GLARGLTCAFGAVGTLVYNPT---KKGYSGVWLRPDYLWLPSSGDAVAFDAKFRMTARPVSVADMVGQIPAGVAYDPKDDDLVKMHAYRDALGVRAAVVLYPGTSATF 507
            GYRE+ +LW      R+PLF+RL  AID+RDIATLYE WVFF L E++   +G   V+    +D  GL       FG+ G L+YN      K YS V LRPD+ W  S    V  DAKFR+  R V         PA  A   +  DL KMH YRDALGV+AAV +YPG S+ F
Sbjct:  367 GYREMLKLWQLFHLGRRPLFERLSQAIDVRDIATLYEIWVFFALVEEVAELLGQSPVIDLQSSDKYGLQWLSEARFGSAGRLIYNKCFQRPKSYS-VPLRPDFTWSRSDKPCVVLDAKFRLE-RLVPQGAEEDDTPAATA---RRADLYKMHTYRDALGVQAAVAVYPGESSEF 535          
BLAST of mRNA_P-wetherbeei_contig53939.1.1 vs. uniprot
Match: A0A6J4NTU9_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=uncultured Chloroflexia bacterium TaxID=1672391 RepID=A0A6J4NTU9_9CHLR)

HSP 1 Score: 120 bits (301), Expect = 5.420e-31
Identity = 78/169 (46.15%), Postives = 96/169 (56.80%), Query Frame = 1
Query:   37 QRARQPLFDRLHHAIDMRDIATLYEYWVFFELAEQIGSAVGDRAVLGSVGNDGL---ARGLTCAFGAVGTLVYNPTKKG---YSGVWLRPDYLWLPSSGDAVAFDAKFRMTARPVSVADMVGQIPAGVAYDPKDDDLVKMHAYRDALG-VRAAVVLYPGTSATFRPVSG 522
            QRA QP+F+ +  AID+R I  LYEYWV+FEL + I +   +  V+ SV  D     A G    F   GTL YN +  G   YS V LRPDY+W  + G  +  DAKFR+      V    G    GV    KD DLVKMHAYRDA+G V AA+VLYPG+   F  V+G
Sbjct:    3 QRASQPIFEDVQQAIDLRSIDKLYEYWVWFELIDSIAAHTSEPPVI-SVSGDQFGAPAHGQRAYFAGHGTLHYNKSYAGHRVYSPVTLRPDYVWERTDGRLIVLDAKFRLDNLGELVTTSNGDTQ-GVLAKAKDADLVKMHAYRDAIGGVAAAIVLYPGSKFGFWNVNG 169          
BLAST of mRNA_P-wetherbeei_contig53939.1.1 vs. uniprot
Match: UPI000A041C73 (DUF2357 domain-containing protein n=1 Tax=Deinococcus pimensis TaxID=309888 RepID=UPI000A041C73)

HSP 1 Score: 125 bits (315), Expect = 1.010e-30
Identity = 76/171 (44.44%), Postives = 97/171 (56.73%), Query Frame = 1
Query:    1 GYRELTRLWFALQRARQPLFDRLHHAIDMRDIATLYEYWVFFELAEQIGSA--VGDRAVLGSVGNDGLARGLTCAFGAVGTLVYNPTKKGYSGVWLRPDYLWLPSSGDAVAFDAKFRMTARPVSVADMVGQIPAGVAYDPKDDDLVKMHAYRDALGVRAAVVLYPGTSATF 507
            GY  L RLW   +RAR P+ D    AID+R+IA LYE W F++L  Q+ +A  V     L     +GL  G +  F   GTLVYN     Y+ + LRPDYLW       VA DAKFR     V+  +  G  P G  +  K DDL KMHAYRDAL + AAV++YPG+++ F
Sbjct:  312 GYNTLYRLWQEFRRARHPMLDHAQDAIDVRNIAQLYEMWSFYQLVHQLHTALNVTPELRLRHSPTEGLGYGTSAHFEGHGTLVYNDQPPSYA-LPLRPDYLWYQGGRPTVAVDAKFRFEG--VTALESEGVNPRGTTF--KADDLYKMHAYRDALQLVAAVIVYPGSTSRF 477          
BLAST of mRNA_P-wetherbeei_contig53939.1.1 vs. uniprot
Match: UPI0019971FA6 (DUF2357 domain-containing protein n=1 Tax=Deinococcus ruber TaxID=1848197 RepID=UPI0019971FA6)

HSP 1 Score: 124 bits (310), Expect = 4.630e-30
Identity = 73/173 (42.20%), Postives = 94/173 (54.34%), Query Frame = 1
Query:    1 GYRELTRLWFALQRARQPLFDRLHHAIDMRDIATLYEYWVFFELAEQIGSAVGDRAVL--GSVGNDGLARGLTCAFGAVGTLVYNPTKKGYSGVWLRPDYLWLPSSGDAVAFDAKFRMTARPVSVADMVGQIPAGVAYDPKDDDLVKMHAYRDALGVRAAVVLYPGTSATFRP 513
            GY  L RLW   ++AR PLF+    A+D R+IA LYE W F +L  ++  A+G   VL      +  LAR +   F   G LVYNPT    S V  RPD LW  ++   VAFDAKFR++ +  S                ++DD+ KMHAYRDAL +RAA+ LYPGT     P
Sbjct:  311 GYVALQRLWREFRQARIPLFEEAQQAVDARNIAALYETWAFLQLVRRVKEALGVEPVLYLPVTASGNLARSVRATFAQHGQLVYNPTPPSTS-VLYRPDILWYEATRPVVAFDAKFRLSPQDPSTF--------------REDDITKMHAYRDALRLRAAITLYPGTQTRLFP 468          
BLAST of mRNA_P-wetherbeei_contig53939.1.1 vs. uniprot
Match: A0A7V9VJP4_9CHLR (DUF2357 domain-containing protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VJP4_9CHLR)

HSP 1 Score: 118 bits (295), Expect = 4.540e-28
Identity = 61/130 (46.92%), Postives = 82/130 (63.08%), Query Frame = 1
Query:    1 GYRELTRLWFALQRARQPLFDRLHHAIDMRDIATLYEYWVFFELAEQIGSAV-GDRAVLGSV--GNDGLARGLTCAFGAVGTLVYNPTKKGYSGVWLRPDYLWLPSSGDAVAFDAKFRMT--ARPVSVAD 375
            GYR+L   W    +AR P++  +  AID+RDIATLYEYWV+FEL  ++   + G R V+ S+     GL  GL  +F   GTL +N  ++ YSG+WLRPDYLW P  G  V FDAKFR+   + P+ +AD
Sbjct:  326 GYRDLNIHWQEFLQARDPVWQPMQEAIDLRDIATLYEYWVWFELCRRVQEELKGGRPVIDSIPPSEMGLPNGLRASFAGHGTLTFNARRQAYSGIWLRPDYLWEPIVGAKVGFDAKFRLARDSAPMEIAD 455          
BLAST of mRNA_P-wetherbeei_contig53939.1.1 vs. uniprot
Match: A0A4Q3WXR8_9BACT (DUF2357 domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A4Q3WXR8_9BACT)

HSP 1 Score: 117 bits (293), Expect = 9.040e-28
Identity = 76/170 (44.71%), Postives = 97/170 (57.06%), Query Frame = 1
Query:    7 RELTRLWFALQRARQPLFDRLHHAIDMRDIATLYEYWVFFELAEQIGSAVGDRAVLGSVGNDGLARGL---TCAFGAVGTLVYNPTKKGYSGVWLRPDYLWLPSSGDAVAFDAKFRMTARPVSVADMVGQIPAGVAYDPKDDDLVKMHAYRDALGVRAAVVLYPGTSATF 507
            REL   W        PLF R   A  +RDIA L+E+W FF L E+IG+A+G+   L    ++   RGL   + A  + GTLVYN     YS   LRPD+LWL +    +AFDAKFR+ A P +  +M G          +  DL KMHAYRDALGVRAAV ++PGT + F
Sbjct:  285 RELVGFWHLWSGVGAPLFARFERAAKLRDIAQLFEFWSFFVLCEEIGAALGETPQLELFTDE--PRGLHPLSRARFSSGTLVYNGAAPSYSTP-LRPDFLWLENGAVTLAFDAKFRLEA-PQNPGEMSG----------RGADLHKMHAYRDALGVRAAVAIHPGTKSVF 440          
BLAST of mRNA_P-wetherbeei_contig53939.1.1 vs. uniprot
Match: Q67M19_SYMTH (Conserved domain protein n=3 Tax=Symbiobacterium TaxID=2733 RepID=Q67M19_SYMTH)

HSP 1 Score: 98.6 bits (244), Expect = 8.750e-21
Identity = 72/175 (41.14%), Postives = 90/175 (51.43%), Query Frame = 1
Query:    1 GYRELTRLWFALQRARQPLFDRLHHAIDMRDIATLYEYWVFFELAEQIGSAVGDRAV-LGSVGNDGLARGLTCAFGAVG-TLVYNPTKKG----YSGVWLRPDYLWLPSSGDAVAFDAKFRMTARPVSVADMVGQIPAGVAYDPKDDDLVKMHAYRDALGVRAAVVLYPGTSATF 507
            GYREL  L+      R P    L  AI  RD+AT+YEYW FF L   +  A+G   + L +    GL       FG  G  LV+N   +G    YS + LRPD+  +  +G A+  DAKFR+ A    + +     P      P+  DL KMH YRDALGVRAAV LYPG  A F
Sbjct:  386 GYRELWALYPEFLLGRSPFGYGLDRAIAARDVATVYEYWCFFRLIRALEPALGPAWLRLRADETGGLDWRTAARFGDGGWRLVFNRPARGGRESYS-LGLRPDFTLIGPAGVALVLDAKFRLDAPRPELDE-----PDRAEASPQAADLYKMHTYRDALGVRAAVALYPGDRAVF 554          
BLAST of mRNA_P-wetherbeei_contig53939.1.1 vs. uniprot
Match: A0A524ALD8_9CHLR (DUF2357 domain-containing protein n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A524ALD8_9CHLR)

HSP 1 Score: 96.3 bits (238), Expect = 5.310e-20
Identity = 76/179 (42.46%), Postives = 93/179 (51.96%), Query Frame = 1
Query:    1 GYRELTRLWFALQRARQPLFDR-LHHAIDMRDIATLYEYWVFFELAEQIGSAVG---DRAVLGSVGNDGLARGLTCAFGAVGTLVYNP-----TKKGYSGVWLRPDYLWLPSSGDAVAFDAKFRMTAR--PVSVADMVGQIPAG--VAYDPKDDDLVKMHAYRDALG-VRAAVVLYPGT 495
            GYREL  L+     +++P F R L  AID RD+ATLYEYW FFEL  +    +     +  L   G   LA  +T  FG+   LVYN       ++ YS V LRPD++        V FDAKFR   R  P    D   +  A   V    K  DL KMH YRDAL  VR+AVVL+PGT
Sbjct:  334 GYRELLELYRQYLSSKRPAFFRNLQEAIDSRDVATLYEYWCFFELVRRFEEELDWGEPKLKLEVRGGGELAWDVTADFGSGRKLVYNEGFGRGRERSYS-VALRPDFVLHEGGKATVVFDAKFRFDVRSLPREREDSYDEDVASGDVERVVKHADLYKMHTYRDALKTVRSAVVLFPGT 511          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53939.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V9VW85_9CHLR2.150e-4048.59DUF2357 domain-containing protein n=1 Tax=Chlorofl... [more]
A0A7C3QXZ9_9CHLR4.390e-3346.59DUF2357 domain-containing protein (Fragment) n=1 T... [more]
A0A7C1JPY6_9BACT3.240e-3246.55DUF2357 domain-containing protein n=1 Tax=Planctom... [more]
A0A6J4NTU9_9CHLR5.420e-3146.15Uncharacterized protein (Fragment) n=1 Tax=uncultu... [more]
UPI000A041C731.010e-3044.44DUF2357 domain-containing protein n=1 Tax=Deinococ... [more]
UPI0019971FA64.630e-3042.20DUF2357 domain-containing protein n=1 Tax=Deinococ... [more]
A0A7V9VJP4_9CHLR4.540e-2846.92DUF2357 domain-containing protein (Fragment) n=1 T... [more]
A0A4Q3WXR8_9BACT9.040e-2844.71DUF2357 domain-containing protein n=1 Tax=bacteriu... [more]
Q67M19_SYMTH8.750e-2141.14Conserved domain protein n=3 Tax=Symbiobacterium T... [more]
A0A524ALD8_9CHLR5.310e-2042.46DUF2357 domain-containing protein n=1 Tax=Anaeroli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53939contigP-wetherbeei_contig53939:1..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog926554.KI912654_gene4546
PFAMsDUF2357,PDDEXK_7
Model size522
Max annot lvl2|Bacteria
KEGG koko:K09124
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.7e-26
EggNOG OGsCOG1700@1|root,COG1700@2|Bacteria
Cds size522
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186806.1015806-CDS-P-wetherbeei_contig53939:0..5221683186806.1015806-CDS-P-wetherbeei_contig53939:0..522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53939 1..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53939.1.1prot_P-wetherbeei_contig53939.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53939 1..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53939.1.1

>prot_P-wetherbeei_contig53939.1.1 ID=prot_P-wetherbeei_contig53939.1.1|Name=mRNA_P-wetherbeei_contig53939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
GYRELTRLWFALQRARQPLFDRLHHAIDMRDIATLYEYWVFFELAEQIGS
AVGDRAVLGSVGNDGLARGLTCAFGAVGTLVYNPTKKGYSGVWLRPDYLW
LPSSGDAVAFDAKFRMTARPVSVADMVGQIPAGVAYDPKDDDLVKMHAYR
DALGVRAAVVLYPGTSATFRPVSG
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mRNA from alignment at P-wetherbeei_contig53939:1..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53939.1.1 ID=mRNA_P-wetherbeei_contig53939.1.1|Name=mRNA_P-wetherbeei_contig53939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig53939:1..522+ (Phaeothamnion wetherbeei SAG_119_79)
GGCTATCGGGAACTGACGCGTCTCTGGTTCGCGTTGCAGCGTGCCCGACA ACCGCTGTTCGATCGACTGCACCACGCGATCGACATGCGGGACATCGCGA CGCTCTACGAGTACTGGGTGTTCTTCGAACTGGCGGAGCAGATCGGCTCG GCAGTGGGCGATAGGGCTGTTCTTGGTTCGGTTGGGAACGATGGATTGGC GCGTGGGCTGACCTGCGCGTTCGGTGCTGTCGGCACCCTTGTCTATAACC CGACGAAGAAGGGGTATTCCGGGGTGTGGTTGCGCCCTGACTACCTCTGG CTGCCGTCCAGTGGGGATGCGGTGGCATTCGATGCCAAGTTCCGCATGAC GGCGCGACCGGTCTCCGTGGCCGATATGGTCGGGCAGATTCCGGCGGGAG TCGCGTACGATCCCAAAGACGACGACTTGGTGAAGATGCACGCCTATCGC GATGCGCTGGGGGTACGAGCCGCGGTCGTGCTCTATCCGGGGACGAGTGC GACTTTCCGTCCGGTGTCGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53939:1..522+

>mRNA_P-wetherbeei_contig53939.1.1 ID=mRNA_P-wetherbeei_contig53939.1.1|Name=mRNA_P-wetherbeei_contig53939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig53939:1..522+ (Phaeothamnion wetherbeei SAG_119_79)
GGCTATCGGGAACTGACGCGTCTCTGGTTCGCGTTGCAGCGTGCCCGACA
ACCGCTGTTCGATCGACTGCACCACGCGATCGACATGCGGGACATCGCGA
CGCTCTACGAGTACTGGGTGTTCTTCGAACTGGCGGAGCAGATCGGCTCG
GCAGTGGGCGATAGGGCTGTTCTTGGTTCGGTTGGGAACGATGGATTGGC
GCGTGGGCTGACCTGCGCGTTCGGTGCTGTCGGCACCCTTGTCTATAACC
CGACGAAGAAGGGGTATTCCGGGGTGTGGTTGCGCCCTGACTACCTCTGG
CTGCCGTCCAGTGGGGATGCGGTGGCATTCGATGCCAAGTTCCGCATGAC
GGCGCGACCGGTCTCCGTGGCCGATATGGTCGGGCAGATTCCGGCGGGAG
TCGCGTACGATCCCAAAGACGACGACTTGGTGAAGATGCACGCCTATCGC
GATGCGCTGGGGGTACGAGCCGCGGTCGTGCTCTATCCGGGGACGAGTGC
GACTTTCCGTCCGGTGTCGGGG
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