mRNA_P-wetherbeei_contig5390.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5390.1.1
Unique NamemRNA_P-wetherbeei_contig5390.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5390.1.1 vs. uniprot
Match: A0A835YKT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKT5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.170e-8
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:  244 LVFRCAVCKKDFKSDKQLANHEGSKQHRKKLLDFERELLRESLRKSGDS 390
            +V+RCA+CKKDFKS+KQ+ NHE SK H+K+L   + ELLRE+L ++ DS
Sbjct:  312 VVYRCALCKKDFKSEKQMGNHEASKAHKKRLEQLDVELLREALAEAQDS 360
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5390.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YKT5_9STRA3.170e-859.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5390contigP-wetherbeei_contig5390:3391..3873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28985.XP_453932.1
PFAMsDnaJ,zf-C2H2,zf-C2H2_jaz,zf-met
Model size483
Max annot lvl4751|Fungi
KEGG koko:K09506
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000055,GO:0001671,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006897,GO:0006913,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008361,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0016192,GO:0022613,GO:0030234,GO:0030544,GO:0030684,GO:0030687,GO:0031072,GO:0031503,GO:0031974,GO:0031981,GO:0032535,GO:0032781,GO:0032991,GO:0033036,GO:0033750,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0050790,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060589,GO:0060590,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090066,GO:0090304,GO:0098657,GO:0098772,GO:1901360,GO:1990904
Exons1
Evalue0.000173
EggNOG OGsKOG0717@1|root,KOG0717@2759|Eukaryota,38GN0@33154|Opisthokonta,3NX06@4751|Fungi,3QQG2@4890|Ascomycota,3RSJ6@4891|Saccharomycetes,3RZXX@4893|Saccharomycetaceae
Ec32 ortholog descriptionDnaJ homologue
Ec32 orthologEc-08_000090.1
Descriptionto Saccharomyces cerevisiae JJJ1 (YNL227C)
Cds size483
COG categoryO
BRITEko00000,ko03009,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186805.7956188-CDS-P-wetherbeei_contig5390:3390..38731683186805.7956188-CDS-P-wetherbeei_contig5390:3390..3873Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5390 3391..3873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5390.1.1prot_P-wetherbeei_contig5390.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5390 3391..3873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5390.1.1

>prot_P-wetherbeei_contig5390.1.1 ID=prot_P-wetherbeei_contig5390.1.1|Name=mRNA_P-wetherbeei_contig5390.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
EDLRRRREERQAERARAEAEEAAAAAAMGCGVGPVRLADLSSSDDNTGGG
GGGGGRRGKAKGKGKAKGKKGGGGGEGDENVLVFRCAVCKKDFKSDKQLA
NHEGSKQHRKKLLDFERELLRESLRKSGDSDGDDDDREGDGDSGGGGGSG
GGGGGASSGDE
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mRNA from alignment at P-wetherbeei_contig5390:3391..3873-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5390.1.1 ID=mRNA_P-wetherbeei_contig5390.1.1|Name=mRNA_P-wetherbeei_contig5390.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig5390:3391..3873- (Phaeothamnion wetherbeei SAG_119_79)
GAGGATCTTCGGCGGCGTCGCGAGGAGCGGCAAGCAGAGCGGGCGCGCGC
CGAGGCCGAGGAAGCAGCCGCGGCCGCCGCGATGGGCTGCGGCGTCGGCC
CTGTCCGCTTGGCTGACCTCAGCAGCAGCGACGACAACACCGGCGGCGGC
GGCGGCGGCGGTGGGCGCCGCGGCAAAGCGAAAGGCAAAGGAAAAGCCAA
GGGGAAGAAAGGCGGCGGCGGCGGGGAGGGTGACGAGAACGTGTTGGTGT
TTCGGTGCGCCGTGTGCAAGAAGGATTTCAAGAGCGACAAGCAGCTTGCG
AACCACGAGGGCAGCAAGCAGCACCGCAAGAAGCTGCTGGACTTCGAGCG
GGAGCTGCTGCGGGAGTCGCTCCGAAAGAGCGGCGACAGCGACGGCGATG
ACGATGACCGAGAGGGCGACGGCGACAGCGGCGGTGGTGGCGGCAGCGGC
GGCGGCGGCGGCGGCGCGAGCTCTGGAGACGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5390:3391..3873-

>mRNA_P-wetherbeei_contig5390.1.1 ID=mRNA_P-wetherbeei_contig5390.1.1|Name=mRNA_P-wetherbeei_contig5390.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig5390:3391..3873- (Phaeothamnion wetherbeei SAG_119_79)
GAGGATCTTCGGCGGCGTCGCGAGGAGCGGCAAGCAGAGCGGGCGCGCGC
CGAGGCCGAGGAAGCAGCCGCGGCCGCCGCGATGGGCTGCGGCGTCGGCC
CTGTCCGCTTGGCTGACCTCAGCAGCAGCGACGACAACACCGGCGGCGGC
GGCGGCGGCGGTGGGCGCCGCGGCAAAGCGAAAGGCAAAGGAAAAGCCAA
GGGGAAGAAAGGCGGCGGCGGCGGGGAGGGTGACGAGAACGTGTTGGTGT
TTCGGTGCGCCGTGTGCAAGAAGGATTTCAAGAGCGACAAGCAGCTTGCG
AACCACGAGGGCAGCAAGCAGCACCGCAAGAAGCTGCTGGACTTCGAGCG
GGAGCTGCTGCGGGAGTCGCTCCGAAAGAGCGGCGACAGCGACGGCGATG
ACGATGACCGAGAGGGCGACGGCGACAGCGGCGGTGGTGGCGGCAGCGGC
GGCGGCGGCGGCGGCGCGAGCTCTGGAGACGAG
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