mRNA_P-wetherbeei_contig53880.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53880.1.1
Unique NamemRNA_P-wetherbeei_contig53880.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53880.1.1 vs. uniprot
Match: A0A4S3K1W0_9GAMM (Uncharacterized protein n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4S3K1W0_9GAMM)

HSP 1 Score: 143 bits (361), Expect = 2.570e-38
Identity = 74/170 (43.53%), Postives = 103/170 (60.59%), Query Frame = 1
Query:    1 MRSLRLLVNDRQRAFIADLRFDAITGAIDEGRQTLTDGPRTSVDLTRYSQLGRWSGYIEVKGRRIDLNGKPVLGVRDHSWGVRPLG--GGGSTRWAPQIHWYWGPIFFSDECMHWHMNDNAEGEIPDRFAALVPRVENAGSGPLYMRDTGGEYLIPVSFTPRYRNGTRRL 504
            MR  R+L++D +R F ADLRF+  TG  +E RQ L DG + S+D+TR +Q G WSG+I+VKG+RI+LN     G RD SWG+RP G  GG   RWA Q ++ W   F+ D  +H  +  + +G++       +PRV  AG  P++ RDTG     PV +T  Y   +RRL
Sbjct:   98 MRRHRVLISDPERGFEADLRFEGGTGTHEEDRQVLHDGVQLSMDVTRMTQFGAWSGWIKVKGKRIELNPAVTNGTRDRSWGIRPCGENGGRPHRWASQFYFGWSQTFWKDFILHGVLFADQKGDLVISSGGTIPRVP-AGDEPVFARDTGEVAATPVGYTFNYLPNSRRL 266          
BLAST of mRNA_P-wetherbeei_contig53880.1.1 vs. uniprot
Match: A0A2A5BWK0_9GAMM (Uncharacterized protein n=1 Tax=Cellvibrionales bacterium TaxID=2026722 RepID=A0A2A5BWK0_9GAMM)

HSP 1 Score: 133 bits (334), Expect = 2.460e-34
Identity = 67/171 (39.18%), Postives = 99/171 (57.89%), Query Frame = 1
Query:    1 MRSLRLLVNDRQRAFIADLRFDAITGAIDEGRQTLTDGPRTSVDLTRYSQLGRWSGYIEVKGRRIDLNGKPVLGVRDHSWGVRPLGGGGS--TRWAPQIHWYWGPIFFSDECMHWHMNDNAEGEIPDRFAALVPRVENAGSGPLYMRDTGGEYLIPVSFTPRYRNGTRRLE 507
            MR  R++VN+  R F ADL F+A TGA +E RQ   DG + S+D+TR SQ G WSG+I +KG+ I+++ +   G RD SWG+RP G   +    W+ QI++ W   F+ +  +H     + EG +     A++PRV   G  P++ RDTG     P  +   Y  GTRR++
Sbjct:   98 MRRHRVIVNEPDRGFEADLTFEAGTGAHEEARQIYNDGVQKSLDITRLSQFGSWSGWIRIKGKYIEVDPRVTNGTRDRSWGIRPCGEKSARPNMWSSQIYFVWSQTFWDNFVLHGMFFADQEGALTTHSGAVIPRVPK-GDEPVFARDTGEIQATPCEYEMNYIPGTRRVK 267          
BLAST of mRNA_P-wetherbeei_contig53880.1.1 vs. uniprot
Match: A0A7V1GT45_9BACT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7V1GT45_9BACT)

HSP 1 Score: 117 bits (292), Expect = 2.780e-28
Identity = 63/171 (36.84%), Postives = 95/171 (55.56%), Query Frame = 1
Query:    1 MRSLRLLVNDRQRAFIADLRFDAITGAIDEGRQTLTDGPRTSVDLTRYSQLGRWSGYIEVKGRRIDLNGKPVLGVRDHSWGVRPLGG--GGSTRWAPQIHWYWGPIFFSDECMHWHMNDNAEGEIPDRFAALVPRVENAGSGPLYMRDTGGEYLIPVSFTPRYRNGTRRLE 507
            +++LR+ ++       ADLRF+A T A++E R     GPR  +D TR +QLGRWSG++++  RR++L     LG RD SWG+RPLG   GG+     Q  W W PI F + C+H+ +N+ ++G     F A+V     A +  +            VS+  R R GTR++E
Sbjct:   98 LQNLRVTIDKNPSGLTADLRFNARTIALEEPRFQQRSGPRLWMDYTRMTQLGRWSGWLQIGDRRLELAPDSWLGARDRSWGIRPLGEPEGGAPAVPWQFFWLWAPIHFPEYCVHFDVNEYSDGTRWHEFGAIVHSEPTAPAPSVR--------AAQVSYNLRLRKGTRQVE 260          
BLAST of mRNA_P-wetherbeei_contig53880.1.1 vs. uniprot
Match: A0A2E8KT19_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8KT19_9GAMM)

HSP 1 Score: 112 bits (280), Expect = 1.550e-26
Identity = 62/172 (36.05%), Postives = 92/172 (53.49%), Query Frame = 1
Query:    1 MRSLRLLVNDRQRAFIADLRFDAITGAIDEGRQTLTDGPRTSVDLTRYSQLGRWSGYIEVKGRRIDLNGKPVLGVRDHSWGVRPLGGGGSTRWAP----QIHWYWGPIFFSDECMHWHMNDNAEGEIPDRFAALVPRVENAGSGPLYMRDTGGEYLIPVSFTPRYRNGTRRL 504
            +++L++LV+D+++   A+L+F+    A++E R T+ +GPR S+D TR +Q GRWSG IE K + IDL+ K   G RD SWGVRP+G   +    P    Q +W W P  F D   H +  D+ EG      + +    E +            E LI V+    Y  GTRR+
Sbjct:   97 LKTLQVLVDDKEKQIKAELKFECRFPAVEEPRMTIKNGPRVSMDSTRMTQHGRWSGKIEFKNKTIDLSDKNYYGTRDRSWGVRPVGQPDTQMLVPVQMPQFYWLWVPANFEDFSTHVYFVDDEEGYSKSCHSVIQEDAEKSE-----------ETLINVTKKLSYTKGTRRI 257          
BLAST of mRNA_P-wetherbeei_contig53880.1.1 vs. uniprot
Match: A0A524NPX3_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A524NPX3_9DELT)

HSP 1 Score: 112 bits (279), Expect = 2.530e-26
Identity = 63/172 (36.63%), Postives = 90/172 (52.33%), Query Frame = 1
Query:    1 MRSLRLLVNDRQRAFIADLRFDAITGAIDEGRQTLTDGPRTSVDLTRYSQLGRWSGYIEVKGRRIDLNGKPVLGVRDHSWGVRPLG----GGGSTRWAPQIHWYWGPIFFSDECMHWHMNDNAEGEIPDRF-AALVPRVENAGSGPLYMRDTGGEYLIPVSFTPRYRNGTRR 501
            MR +RL+++D       DL F A T  I+EGRQT     R  +D TR++QLGRW G I   G  +D++   V+G +D SWG+RP+G    GG     AP   + W PI + D C H+ + ++A+G +P  F  A+VP        P    D G   ++       Y+ GTRR
Sbjct:  101 MRRIRLVIDDNDTGIGCDLEFSARTACIEEGRQTWRPHGRVLMDATRFAQLGRWRGRIRYDGHSVDVDPTHVMGTKDRSWGLRPVGEPEAGGAPALSAPSFFFLWSPIHWDDHCTHFGVFEDADG-VPWHFDGAIVPAYARPEEVP-GTTDPGTRAMLHGRHRIDYQPGTRR 270          
BLAST of mRNA_P-wetherbeei_contig53880.1.1 vs. uniprot
Match: A0A6L8JL25_9ACTN (Uncharacterized protein n=5 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L8JL25_9ACTN)

HSP 1 Score: 111 bits (278), Expect = 3.480e-26
Identity = 57/175 (32.57%), Postives = 94/175 (53.71%), Query Frame = 1
Query:    1 MRSLRLLVNDRQRAFIADLRFDAITGAIDEGRQTLTDGPRTSVDLTRYSQLGRWSGYIEVKGRRIDLNGKPVLGVRDHSWGVRPLGGGGSTRWAPQ------IHWYWGPIFFSDECMHWHMNDNAEGEIPDRFAALVPRVENAGSGPLYMRDTGGEYLIPVSFTPRYRNGTRRLE 507
            M++ R+++      F ADL F+A T AI+E R   +DG R  +D TR++Q GRW G+IE  G+R++++     G +D SWGVRP+ GG   R APQ      + + W P+ + D C H+ + ++  G       A +P  E+    P  + D G E +  +     + +G+R ++
Sbjct:   98 MKACRVVLEPNDTDFAADLTFEARTAAIEEPRHHWSDGSRRIMDTTRFTQFGRWHGWIEYDGQRMEIDRTETYGTKDRSWGVRPVAGG-DNRGAPQAPRAMGLFFLWAPLHWDDMCSHYQLFEDTLGRPRFHVGAFLPTYESLADNPA-VEDPGVEPMHRLEHHLEFESGSRMIK 270          
BLAST of mRNA_P-wetherbeei_contig53880.1.1 vs. uniprot
Match: A0A7Y2BGM7_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y2BGM7_9DELT)

HSP 1 Score: 111 bits (277), Expect = 4.850e-26
Identity = 58/171 (33.92%), Postives = 89/171 (52.05%), Query Frame = 1
Query:    1 MRSLRLLVNDRQRAFIADLRFDAITGAIDEGRQTLTDGPRTSVDLTRYSQLGRWSGYIEVKGRRIDLNGKPVLGVRDHSWGVRPLGG---GGSTRWA--PQIHWYWGPIFFSDECMHWHMNDNAEGEIPDRFAALVPRVENAGSGPLYMRDTGGEYLIPVSFTPRYRNGTR 498
            MR +RL++         DL F A    I E +  + DG R  +D  R++QLG W G+I +KGRRI+L    V+GVRD SWG+RP+G    G  +R    P ++W W PI F   C H+   +  +G   +  AA++    +    P  + +   E +   S + ++R+GTR
Sbjct:   98 MRQIRLVIETNDTGVECDLTFHAKAPPIQEPKNHMWDGNRLIMDTQRFTQLGTWEGFISIKGRRIELTRSEVIGVRDKSWGMRPVGEYEEGAPSRLTTDPAVYWIWSPIHFDGFCTHFLTRELPDGFAEELSAAIIKTYPDDAEVPKDVLEADEERMASASNSIKWRSGTR 268          
BLAST of mRNA_P-wetherbeei_contig53880.1.1 vs. uniprot
Match: A0A7C2NJ64_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C2NJ64_9DELT)

HSP 1 Score: 110 bits (275), Expect = 9.550e-26
Identity = 60/172 (34.88%), Postives = 90/172 (52.33%), Query Frame = 1
Query:    1 MRSLRLLVNDRQRAFIADLRFDAITGAIDEGRQTLTDGPRTSVDLTRYSQLGRWSGYIEVKGRRIDLNGKPVLGVRDHSWGVRPLGG-----GGSTRWAPQIHWYWGPIFFSDECMHWHMNDNAEGEIPDRFAALVPRVENAGSGPLYMRDTGGEYLIPVSFTPRYRNGTRR 501
            MR LR++++  +     +L F A T  ++EGRQT+  G R  +D+TR++Q GRWSG +   G+ + L+   V GV+D SWGVRPLG            A Q+ + W PI + D C H+ + ++A+G       A++P  + +        D   E L  V    RY  GTRR
Sbjct:   98 MRRLRVVLDSNETGIEGELHFSARTACVEEGRQTMRRGTRLVMDVTRFAQFGRWSGELRYAGQTVKLDPARVYGVKDRSWGVRPLGPPDPAIAPQPPGAAQVFFLWAPIHWPDRCTHFGVFEDADGRRIHWDGAVLPVYDRSPDDIPGTMDDRVELLAAVDHALRYVPGTRR 269          
BLAST of mRNA_P-wetherbeei_contig53880.1.1 vs. uniprot
Match: A0A8I1UMQ1_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A8I1UMQ1_9PROT)

HSP 1 Score: 109 bits (272), Expect = 2.250e-25
Identity = 64/167 (38.32%), Postives = 93/167 (55.69%), Query Frame = 1
Query:    1 MRSLRLLVNDRQRAFIADLRFDAITGAIDEGRQTLTDGPRTSVDLTRYSQLGRWSGYIEVKGRRIDLNGKPVLGVRDHSWGVRPLGGGGSTRWAP----QIHWYWGPIFFSDECMHWHMNDNAEGEIPDRFAALVPRVENAGSGPLYMRDTGGEYLIPVSFTPRYRN 489
            +RSLR+ V D +    AD+ F A    ++E R T   GPRT +D TR +Q G + G I + G+ I+L+ + VLG RD SWGVRP+G       AP    Q +W W P+ F D  M +H+N NA+G  P   A+++  +E A   P++M   G E    ++F P  R+
Sbjct:   97 LRSLRVKVQDHEHNIHADVVFHARAKPVEEPRFTFRQGPRTMMDYTRLTQNGAYEGSITINGKTIELSREMVLGTRDRSWGVRPIGLSDPQPAAPPLPPQFYWLWSPLNFPDRFMLYHINANADG-TPWNTASVLGGLEEAE--PVHMASCGSE----LAFKPGTRH 256          
BLAST of mRNA_P-wetherbeei_contig53880.1.1 vs. uniprot
Match: A0A3B8XVB5_9HYPH (Uncharacterized protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A3B8XVB5_9HYPH)

HSP 1 Score: 108 bits (271), Expect = 3.230e-25
Identity = 60/173 (34.68%), Postives = 88/173 (50.87%), Query Frame = 1
Query:    1 MRSLRLLVNDRQRAFIADLRFDAITGAIDEGRQTLTDGPRTSVDLTRYSQLGRWSGYIEVKGRRIDLNGKPVLGVRDHSWGVRPLGGGGSTRWAP----QIHWYWGPIFFSDECMHWHMNDNAEGEIPDRFAALVPRVENAGSGPLYMRDTGGEYLIPVSFTPRYRNGTRRLE 507
            + SLR+ V + +    ADL F     A+ E R T  +GPRT +D+TR +Q G W G+IEVKG+RI++     +G RD SWGVRP+G   +    P    Q  W W P+ F D    +H+ND+  GE  +    + P            RD   + +  VS+   Y +G+R  +
Sbjct:   97 LHSLRVRVAENEHGIKADLTFTGRAPALKEPRFTRRNGPRTLMDVTRMTQNGTWEGWIEVKGKRIEVKSSDFVGTRDRSWGVRPIGASDAQPMVPPMEFQFFWLWAPLNFDDCITLFHVNDDEHGEPWNLSGVVCPLG----------RDAKSQEMDRVSYEIDYISGSRHAK 259          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53880.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4S3K1W0_9GAMM2.570e-3843.53Uncharacterized protein n=1 Tax=Panacagrimonas per... [more]
A0A2A5BWK0_9GAMM2.460e-3439.18Uncharacterized protein n=1 Tax=Cellvibrionales ba... [more]
A0A7V1GT45_9BACT2.780e-2836.84Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A2E8KT19_9GAMM1.550e-2636.05Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A524NPX3_9DELT2.530e-2636.63Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A6L8JL25_9ACTN3.480e-2632.57Uncharacterized protein n=5 Tax=Acidimicrobiia bac... [more]
A0A7Y2BGM7_9DELT4.850e-2633.92Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A7C2NJ64_9DELT9.550e-2634.88Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A8I1UMQ1_9PROT2.250e-2538.32Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A3B8XVB5_9HYPH3.230e-2534.68Uncharacterized protein n=2 Tax=Hyphomicrobiales T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53880contigP-wetherbeei_contig53880:29..535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog402881.Plav_2500
Model size507
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.38e-25
EggNOG OGs2DB8I@1|root,2Z7RY@2|Bacteria,1MY4M@1224|Proteobacteria,2U2A8@28211|Alphaproteobacteria
Cds size507
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186805.3465211-CDS-P-wetherbeei_contig53880:28..5351683186805.3465211-CDS-P-wetherbeei_contig53880:28..535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53880 29..535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53880.1.1prot_P-wetherbeei_contig53880.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53880 29..535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53880.1.1

>prot_P-wetherbeei_contig53880.1.1 ID=prot_P-wetherbeei_contig53880.1.1|Name=mRNA_P-wetherbeei_contig53880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
MRSLRLLVNDRQRAFIADLRFDAITGAIDEGRQTLTDGPRTSVDLTRYSQ
LGRWSGYIEVKGRRIDLNGKPVLGVRDHSWGVRPLGGGGSTRWAPQIHWY
WGPIFFSDECMHWHMNDNAEGEIPDRFAALVPRVENAGSGPLYMRDTGGE
YLIPVSFTPRYRNGTRRLE
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mRNA from alignment at P-wetherbeei_contig53880:29..535-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53880.1.1 ID=mRNA_P-wetherbeei_contig53880.1.1|Name=mRNA_P-wetherbeei_contig53880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig53880:29..535- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCAGCCTGCGTCTGCTGGTCAATGATCGGCAGCGGGCTTTCATTGC AGACCTTCGTTTCGACGCCATCACCGGCGCCATCGACGAAGGCCGACAGA CCTTGACCGACGGGCCGCGCACCTCGGTCGATCTCACGCGTTATTCACAG CTCGGTCGCTGGTCAGGCTATATCGAGGTCAAGGGCCGTCGCATCGACCT CAATGGCAAGCCTGTGCTCGGTGTGCGAGATCATTCCTGGGGTGTGCGTC CCCTGGGCGGTGGTGGCAGCACACGCTGGGCACCGCAGATCCACTGGTAC TGGGGACCGATATTCTTTAGTGACGAATGCATGCACTGGCATATGAACGA CAACGCGGAAGGCGAAATCCCGGACCGCTTTGCGGCCTTGGTGCCGCGCG TCGAGAACGCCGGCAGCGGGCCGCTCTACATGCGCGACACCGGCGGTGAA TATCTGATCCCGGTGTCCTTCACGCCGCGCTACCGCAACGGCACGCGGCG CCTCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53880:29..535-

>mRNA_P-wetherbeei_contig53880.1.1 ID=mRNA_P-wetherbeei_contig53880.1.1|Name=mRNA_P-wetherbeei_contig53880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig53880:29..535- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCAGCCTGCGTCTGCTGGTCAATGATCGGCAGCGGGCTTTCATTGC
AGACCTTCGTTTCGACGCCATCACCGGCGCCATCGACGAAGGCCGACAGA
CCTTGACCGACGGGCCGCGCACCTCGGTCGATCTCACGCGTTATTCACAG
CTCGGTCGCTGGTCAGGCTATATCGAGGTCAAGGGCCGTCGCATCGACCT
CAATGGCAAGCCTGTGCTCGGTGTGCGAGATCATTCCTGGGGTGTGCGTC
CCCTGGGCGGTGGTGGCAGCACACGCTGGGCACCGCAGATCCACTGGTAC
TGGGGACCGATATTCTTTAGTGACGAATGCATGCACTGGCATATGAACGA
CAACGCGGAAGGCGAAATCCCGGACCGCTTTGCGGCCTTGGTGCCGCGCG
TCGAGAACGCCGGCAGCGGGCCGCTCTACATGCGCGACACCGGCGGTGAA
TATCTGATCCCGGTGTCCTTCACGCCGCGCTACCGCAACGGCACGCGGCG
CCTCGAG
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