mRNA_P-wetherbeei_contig5383.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5383.1.1
Unique NamemRNA_P-wetherbeei_contig5383.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5383.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5383contigP-wetherbeei_contig5383:1327..3669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1904
Hectar predicted targeting categorysignal anchor
Exons4
Cds size1254
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186804.879662-CDS-P-wetherbeei_contig5383:1326..14911683186804.879662-CDS-P-wetherbeei_contig5383:1326..1491Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5383 1327..1491 -
1683186804.8885086-CDS-P-wetherbeei_contig5383:1695..23051683186804.8885086-CDS-P-wetherbeei_contig5383:1695..2305Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5383 1696..2305 -
1683186804.8968832-CDS-P-wetherbeei_contig5383:2317..27961683186804.8968832-CDS-P-wetherbeei_contig5383:2317..2796Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5383 2318..2796 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186804.9053576-UTR-P-wetherbeei_contig5383:2796..28651683186804.9053576-UTR-P-wetherbeei_contig5383:2796..2865Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5383 2797..2865 -
1683186804.9138055-UTR-P-wetherbeei_contig5383:3089..36691683186804.9138055-UTR-P-wetherbeei_contig5383:3089..3669Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5383 3090..3669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5383.1.1prot_P-wetherbeei_contig5383.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5383 1327..2796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5383.1.1

>prot_P-wetherbeei_contig5383.1.1 ID=prot_P-wetherbeei_contig5383.1.1|Name=mRNA_P-wetherbeei_contig5383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=418bp
MKRKQGCRATRLKRLQCSDERDISASSAASILPRSRPHHHDPYGSPQPAW
QKRSWKPAPLAAAPVAAVAMVAATTVTTAATAAAHAAAAVVEAAAAVAAE
EAATTAAEEATTAAAATADLPVLEIERVVLSPSPAIGLAGTPLHVYIQAF
FSCFGQQQSTCGLSDITVSLLPGHQKGRSVAPCANLRRAIALGIVAVGAM
LSGNCPDPATPAGFALEANLAMQHALQAGASGKQCGGGSGGEDVWGGRGS
GGEDVWGGGGGGSGKEAGGGGFNNVNGRCGTANVGCPIVRSPRKADAADA
AGAAFTAAADAPTAAAGAGERLPRASSPEASDGDESAFRKLFCIASVLEA
TYFLLCGNAYLWEDCLCNAVESYHTGYDPSAVAVAEATVKTTVAAAVPAG
SALAGIKMEGAGTAGSKR
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mRNA from alignment at P-wetherbeei_contig5383:1327..3669-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5383.1.1 ID=mRNA_P-wetherbeei_contig5383.1.1|Name=mRNA_P-wetherbeei_contig5383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2343bp|location=Sequence derived from alignment at P-wetherbeei_contig5383:1327..3669- (Phaeothamnion wetherbeei SAG_119_79)
GCGGGGGCGGGGTTGGAGGGGGGTTTTCCCAGCCCCACCCGGCGCGAATT
CGCTTAGAGCCCACTGATATATGTTGCGCAACCCGCCAGAAGTGCCCCTG
CCTTGAGTTTCCAAAGGTTTACGGGCTGTCCTACGGAATCCAACCACCTG
TGAAAAGTCTGGTGAAGGGATGAATTTTCCCGACCGGGATTCGTGGAAAG
AATATTCTATTAGAATATTATAGTATTGTTATTATTCGTTGTTATCGGGA
ATTCCTGAGGGCGAAGGTCAACCGCAGGCAAAGCTTTTGTAGTTCCCCCC
TCTTTAGCTTTGCCTTTGAGCAGGAAAAAGAGTGGGGATCAATACGTACG
TCTCGGGGCCATACACACGGGGGCTGAATACATCGTTGTACCTGTCCAGT
AAACGGACATACAACAGATTATTTCAGAATACTATAAGCTTAATTTAGGC
CACCTAGGACACAGCATAACTCAAGAATTCCCGCTATCGGCTGTCTCCCT
CTTGCTTCTGCGGACGATGCCGGCCTGATTCAGCCAATCGATCTCGGTGC
ACCGGCTATCTGTTCGAAGCATACAAGCAGGTGAGGAGGAGCGCGGAGAA
GGAAGGCTAAGTGCTTCGCCTGATAAGAGCATCTTTGCCGCGCTGGAGTA
GTTTCTTCCTTGGAAGTTTAATCTGTTGTCTCTCTCTTCACACGGGGAGA
GAGACACGCACACACAGCACTAACTCATTTCCTTCTTTCTTTCGTCTTTA
TTATTTCTTGCTTCTTCTTCCTCCTCTTCTCCGCTCTCTCACGGAGGAGT
GCAGTTTTTTGTGCGTCTGTCTGGCTGCGTGCGGTGGCTGTGCCGGCTGC
GGTTTCCTTTGGCTGCGTGCTGCATGAAGCGCAAACAGGGTTGCCGCGCT
ACGCGTTTGAAACGCTTGCAATGCAGTGACGAGAGAGATATCAGTGCGTC
GTCCGCTGCATCTATCCTTCCGCGATCGCGGCCGCACCACCATGATCCTT
ACGGCTCCCCGCAGCCGGCCTGGCAAAAGCGTTCCTGGAAACCAGCCCCC
CTGGCGGCCGCACCGGTGGCCGCCGTGGCCATGGTGGCGGCGACGACGGT
GACGACGGCGGCGACGGCGGCGGCGCACGCAGCGGCCGCAGTTGTGGAGG
CAGCGGCGGCAGTGGCAGCGGAGGAAGCGGCGACGACGGCGGCGGAGGAA
GCGACGACGGCGGCGGCGGCGACGGCAGACCTACCCGTACTGGAGATTGA
ACGCGTCGTTCTCTCGCCGTCCCCTGCGATTGGGCTGGCCGGTACCCCTC
TGCATGTCTACATCCAAGCGTTCTTTTCGTGCTTCGGGCAGCAGCAAAGC
ACGTTCCTGCCCGACTGTGGGCTCAGCGACATCACTGTGTCGCTTTTACC
CGGTCACCAAAAGGGTAGAAGCGTCGCCCCCTGCGCGAACCTCCGTCGTG
CAATTGCTCTCGGCATCGTCGCCGTTGGCGCAATGCTGAGCGGCAATTGC
CCCGACCCCGCCACGCCCGCCGGCTTCGCGCTGGAGGCCAACCTTGCAAT
GCAACATGCGTTGCAAGCAGGGGCTAGTGGCAAACAATGCGGCGGTGGCA
GCGGCGGTGAGGACGTCTGGGGCGGCCGTGGCAGCGGCGGTGAGGACGTC
TGGGGCGGCGGCGGCGGCGGCAGCGGCAAGGAGGCTGGTGGCGGCGGCTT
CAATAATGTCAACGGCCGCTGTGGCACCGCCAACGTCGGCTGCCCCATCG
TTCGAAGCCCCCGAAAGGCCGACGCCGCCGACGCTGCCGGTGCTGCCTTC
ACTGCCGCCGCTGACGCTCCTACCGCCGCCGCGGGCGCTGGGGAGCGGCT
GCCAAGAGCGTCGTCGCCTGAGGCCTCAGATGGCGACGAATCGGCCTTTC
GCAAACTGTTTTGCATTGCTTCGGTTCTCGAGGCAACTTACTTTCTTCTC
TGCGGCAACGCGTACCTGTGGGAAGTAAGCGTACATCCGCTTCCTTCCAG
CGGGCGACTGCGGGCTGAGGTCGAAATATTTGCTTGTGACCTTTGAACCC
AACCGTGTGGGCGTCACGCACCTGGCTGGCTGGTCATGGCGGACCAGAGT
ATGCGGTTATCTTCCACCAGATCGCGCGCCAATTGTTTTCCATCCCGAAA
CACTCCTAATCGCCTCTTTGCTACGCAGGACTGTCTATGCAACGCAGTCG
AGTCGTACCACACGGGATATGATCCCAGCGCAGTTGCCGTGGCAGAGGCA
ACTGTCAAAACCACGGTAGCCGCAGCGGTGCCAGCAGGTTCCGCTCTGGC
GGGGATCAAGATGGAGGGTGCCGGGACAGCGGGGTCGAAGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5383:1327..3669-

>mRNA_P-wetherbeei_contig5383.1.1 ID=mRNA_P-wetherbeei_contig5383.1.1|Name=mRNA_P-wetherbeei_contig5383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1254bp|location=Sequence derived from alignment at P-wetherbeei_contig5383:1327..3669- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCGCAAACAGGGTTGCCGCGCTACGCGTTTGAAACGCTTGCAATG
CAGTGACGAGAGAGATATCAGTGCGTCGTCCGCTGCATCTATCCTTCCGC
GATCGCGGCCGCACCACCATGATCCTTACGGCTCCCCGCAGCCGGCCTGG
CAAAAGCGTTCCTGGAAACCAGCCCCCCTGGCGGCCGCACCGGTGGCCGC
CGTGGCCATGGTGGCGGCGACGACGGTGACGACGGCGGCGACGGCGGCGG
CGCACGCAGCGGCCGCAGTTGTGGAGGCAGCGGCGGCAGTGGCAGCGGAG
GAAGCGGCGACGACGGCGGCGGAGGAAGCGACGACGGCGGCGGCGGCGAC
GGCAGACCTACCCGTACTGGAGATTGAACGCGTCGTTCTCTCGCCGTCCC
CTGCGATTGGGCTGGCCGGTACCCCTCTGCATGTCTACATCCAAGCGTTC
TTTTCGTGCTTCGGGCAGCAGCAAAGCACCTGTGGGCTCAGCGACATCAC
TGTGTCGCTTTTACCCGGTCACCAAAAGGGTAGAAGCGTCGCCCCCTGCG
CGAACCTCCGTCGTGCAATTGCTCTCGGCATCGTCGCCGTTGGCGCAATG
CTGAGCGGCAATTGCCCCGACCCCGCCACGCCCGCCGGCTTCGCGCTGGA
GGCCAACCTTGCAATGCAACATGCGTTGCAAGCAGGGGCTAGTGGCAAAC
AATGCGGCGGTGGCAGCGGCGGTGAGGACGTCTGGGGCGGCCGTGGCAGC
GGCGGTGAGGACGTCTGGGGCGGCGGCGGCGGCGGCAGCGGCAAGGAGGC
TGGTGGCGGCGGCTTCAATAATGTCAACGGCCGCTGTGGCACCGCCAACG
TCGGCTGCCCCATCGTTCGAAGCCCCCGAAAGGCCGACGCCGCCGACGCT
GCCGGTGCTGCCTTCACTGCCGCCGCTGACGCTCCTACCGCCGCCGCGGG
CGCTGGGGAGCGGCTGCCAAGAGCGTCGTCGCCTGAGGCCTCAGATGGCG
ACGAATCGGCCTTTCGCAAACTGTTTTGCATTGCTTCGGTTCTCGAGGCA
ACTTACTTTCTTCTCTGCGGCAACGCGTACCTGTGGGAAGACTGTCTATG
CAACGCAGTCGAGTCGTACCACACGGGATATGATCCCAGCGCAGTTGCCG
TGGCAGAGGCAACTGTCAAAACCACGGTAGCCGCAGCGGTGCCAGCAGGT
TCCGCTCTGGCGGGGATCAAGATGGAGGGTGCCGGGACAGCGGGGTCGAA
GAGG
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