mRNA_P-wetherbeei_contig5380.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5380.1.1
Unique NamemRNA_P-wetherbeei_contig5380.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5380.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5380contigP-wetherbeei_contig5380:2..1989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3067.XP_002957261.1
PFAMsDUF4520,DUF4524
Model size1828
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.08e-12
EggNOG OGs291FM@1|root,2R8BI@2759|Eukaryota,380C6@33090|Viridiplantae,34M6P@3041|Chlorophyta
DescriptionDomain of unknown function (DUF4524)
Cds size1686
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186804.5699403-UTR-P-wetherbeei_contig5380:1..751683186804.5699403-UTR-P-wetherbeei_contig5380:1..75Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5380 2..75 +
1683186804.6096075-UTR-P-wetherbeei_contig5380:1921..19891683186804.6096075-UTR-P-wetherbeei_contig5380:1921..1989Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5380 1922..1989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186804.587764-CDS-P-wetherbeei_contig5380:75..6801683186804.587764-CDS-P-wetherbeei_contig5380:75..680Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5380 76..680 +
1683186804.6006222-CDS-P-wetherbeei_contig5380:840..19211683186804.6006222-CDS-P-wetherbeei_contig5380:840..1921Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5380 841..1921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5380.1.1prot_P-wetherbeei_contig5380.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5380 76..1921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5380.1.1

>prot_P-wetherbeei_contig5380.1.1 ID=prot_P-wetherbeei_contig5380.1.1|Name=mRNA_P-wetherbeei_contig5380.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=562bp
MKRSNQIRHLLYEGGVSITCCGQDAIVMEDRGAAFTYVSSDNRMVRHLTR
YCPTAIRDLAAAALRFCNRHSRRPFLCERLAGTPAPPGCPRAAWSSATSH
CRVLEDGSVILEATGGNASLRLHPLREEVEARFSVRVPGTARHVWVEQAF
LASDAPECFRFPLSLARSRCGSGDVNDVGTAGATCVTLPLPQPEAARSDH
TTWTAVADSDDARLPLDRRLSPTDGLFRERRRPAQPPFLCIDVSELARRG
PSHHAGSLRPIVEHCAAASLRVLLPPASAAGAAVAATPPVIQMHVQGDGS
QLVLDGNFLLHRTRRLGEQTCVESGAAATSPFQTSVYHVEAADAVRIPYS
RGTDAAVFHGEYRLGPLATLALRLREQYQRTSPVATPLPPSGLFREVFDT
DVQERARTDAGTFTAYRDGRVSARFRDRTLLHVSADGSTCRAVLPDAREV
TVASHHPGDLGPYLAAAAHFGRWAIADAGQRRAMAAVSVAGRTAAAAAAA
KTRRFVCIAALTTGAAKVDNPTARAWAVERPLGPHAVLAELGRNECFLRD
LGHQPRTNSIM*
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mRNA from alignment at P-wetherbeei_contig5380:2..1989+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5380.1.1 ID=mRNA_P-wetherbeei_contig5380.1.1|Name=mRNA_P-wetherbeei_contig5380.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1988bp|location=Sequence derived from alignment at P-wetherbeei_contig5380:2..1989+ (Phaeothamnion wetherbeei SAG_119_79)
CCTACCGCCCGTTTGCCTTGATCCTCCCTCCTTGTCATTGCAGCTGCTTG
CTTTTGAATCTTTGGCACACCGATATGAAACGATCAAATCAAATCCGGCA
CTTGCTCTACGAAGGCGGCGTCTCCATCACGTGTTGTGGACAGGATGCGA
TTGTCATGGAGGACCGCGGCGCGGCTTTCACCTACGTCTCCAGCGACAAC
CGCATGGTCCGCCACCTCACGCGGTACTGCCCGACAGCGATTCGAGACCT
TGCGGCGGCGGCTCTGCGCTTTTGCAATCGGCATTCCAGGCGCCCGTTCT
TGTGCGAAAGGCTAGCCGGAACCCCCGCCCCGCCCGGCTGTCCGCGCGCG
GCGTGGTCGAGCGCCACATCGCACTGCCGCGTTTTGGAGGACGGCTCGGT
CATCCTGGAAGCGACAGGTGGCAATGCGTCGCTCAGGCTGCATCCGCTGC
GGGAGGAGGTGGAGGCGCGATTCTCCGTGCGTGTCCCCGGCACCGCACGG
CACGTGTGGGTAGAGCAGGCCTTCCTGGCGTCCGATGCTCCGGAATGCTT
TCGGTTTCCGCTCTCTCTGGCACGCAGCCGCTGCGGCAGTGGCGATGTCA
ATGATGTCGGAACCGCCGGCGCAACTTGCGTCACGCTTCCGCTGCCGCAG
CCGGAAGCAGCTCGGTCGGATCACACCACGTAGGTCTTTGAGCGGTAGGT
ATTCTTTGCTTGTAAAATCAACTTTGTTCTTGGTGACATGTTGATGGGCA
TTGTTACAGATGACTAACCAACCAGTCTGCCTTCCAGCTCTTTTAAACTT
TCCTTCCGCGCTTTCGACTTTCATCGTAAATTGTCTCAGATGGACCGCGG
TGGCAGACTCCGACGACGCCCGGCTGCCCCTGGATCGGCGCCTTTCGCCG
ACGGATGGACTTTTCCGGGAAAGGAGAAGACCCGCGCAGCCGCCCTTTTT
GTGCATCGATGTGTCGGAGCTGGCACGGCGTGGGCCCAGCCACCACGCCG
GCAGCTTGCGGCCGATCGTTGAGCATTGCGCCGCCGCCAGCCTGCGCGTC
CTGCTGCCGCCGGCGTCTGCTGCCGGCGCCGCTGTTGCTGCGACACCACC
GGTGATCCAAATGCATGTCCAAGGAGACGGCTCACAGCTGGTTTTGGACG
GAAATTTTCTGCTGCACCGGACTCGTCGGCTCGGCGAGCAGACTTGCGTC
GAATCCGGCGCCGCCGCGACCTCCCCGTTTCAGACGAGCGTCTACCACGT
GGAGGCGGCGGATGCAGTGCGAATCCCCTACAGCAGAGGCACTGACGCCG
CTGTTTTCCACGGCGAGTACAGGCTGGGACCGCTGGCGACGTTAGCGCTG
CGGCTGCGAGAGCAATATCAGCGTACGAGTCCGGTCGCAACGCCGCTGCC
ACCGTCGGGGCTGTTTCGGGAAGTCTTTGACACTGATGTGCAAGAGCGCG
CCCGCACGGATGCCGGCACGTTTACAGCGTACCGGGACGGCCGCGTCAGC
GCCCGTTTCCGCGACAGGACCCTCCTTCACGTCTCCGCCGACGGCAGCAC
GTGCCGCGCCGTCCTGCCGGACGCCCGCGAGGTCACTGTTGCTTCACATC
ACCCAGGAGACCTCGGACCCTACCTCGCCGCTGCCGCACACTTTGGCCGC
TGGGCGATTGCCGACGCGGGGCAGCGGCGGGCCATGGCGGCCGTGTCCGT
TGCCGGCCGGACGGCGGCGGCGGCGGCTGCGGCCAAGACACGGCGCTTTG
TCTGCATCGCGGCTCTGACGACGGGGGCGGCGAAAGTTGATAATCCGACG
GCGCGAGCCTGGGCCGTGGAGAGGCCGCTTGGACCGCACGCGGTGCTGGC
GGAGCTCGGGCGGAACGAATGCTTTCTTCGGGACTTGGGCCACCAGCCCC
GTACAAATTCAATCATGTAAAAGAAAAGAATACCGAAAATAAAACAGAGG
AATGCATGTCATTGCAATTTGTACATTGACGGAAGGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5380:2..1989+

>mRNA_P-wetherbeei_contig5380.1.1 ID=mRNA_P-wetherbeei_contig5380.1.1|Name=mRNA_P-wetherbeei_contig5380.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1686bp|location=Sequence derived from alignment at P-wetherbeei_contig5380:2..1989+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACGATCAAATCAAATCCGGCACTTGCTCTACGAAGGCGGCGTCTC
CATCACGTGTTGTGGACAGGATGCGATTGTCATGGAGGACCGCGGCGCGG
CTTTCACCTACGTCTCCAGCGACAACCGCATGGTCCGCCACCTCACGCGG
TACTGCCCGACAGCGATTCGAGACCTTGCGGCGGCGGCTCTGCGCTTTTG
CAATCGGCATTCCAGGCGCCCGTTCTTGTGCGAAAGGCTAGCCGGAACCC
CCGCCCCGCCCGGCTGTCCGCGCGCGGCGTGGTCGAGCGCCACATCGCAC
TGCCGCGTTTTGGAGGACGGCTCGGTCATCCTGGAAGCGACAGGTGGCAA
TGCGTCGCTCAGGCTGCATCCGCTGCGGGAGGAGGTGGAGGCGCGATTCT
CCGTGCGTGTCCCCGGCACCGCACGGCACGTGTGGGTAGAGCAGGCCTTC
CTGGCGTCCGATGCTCCGGAATGCTTTCGGTTTCCGCTCTCTCTGGCACG
CAGCCGCTGCGGCAGTGGCGATGTCAATGATGTCGGAACCGCCGGCGCAA
CTTGCGTCACGCTTCCGCTGCCGCAGCCGGAAGCAGCTCGGTCGGATCAC
ACCACATGGACCGCGGTGGCAGACTCCGACGACGCCCGGCTGCCCCTGGA
TCGGCGCCTTTCGCCGACGGATGGACTTTTCCGGGAAAGGAGAAGACCCG
CGCAGCCGCCCTTTTTGTGCATCGATGTGTCGGAGCTGGCACGGCGTGGG
CCCAGCCACCACGCCGGCAGCTTGCGGCCGATCGTTGAGCATTGCGCCGC
CGCCAGCCTGCGCGTCCTGCTGCCGCCGGCGTCTGCTGCCGGCGCCGCTG
TTGCTGCGACACCACCGGTGATCCAAATGCATGTCCAAGGAGACGGCTCA
CAGCTGGTTTTGGACGGAAATTTTCTGCTGCACCGGACTCGTCGGCTCGG
CGAGCAGACTTGCGTCGAATCCGGCGCCGCCGCGACCTCCCCGTTTCAGA
CGAGCGTCTACCACGTGGAGGCGGCGGATGCAGTGCGAATCCCCTACAGC
AGAGGCACTGACGCCGCTGTTTTCCACGGCGAGTACAGGCTGGGACCGCT
GGCGACGTTAGCGCTGCGGCTGCGAGAGCAATATCAGCGTACGAGTCCGG
TCGCAACGCCGCTGCCACCGTCGGGGCTGTTTCGGGAAGTCTTTGACACT
GATGTGCAAGAGCGCGCCCGCACGGATGCCGGCACGTTTACAGCGTACCG
GGACGGCCGCGTCAGCGCCCGTTTCCGCGACAGGACCCTCCTTCACGTCT
CCGCCGACGGCAGCACGTGCCGCGCCGTCCTGCCGGACGCCCGCGAGGTC
ACTGTTGCTTCACATCACCCAGGAGACCTCGGACCCTACCTCGCCGCTGC
CGCACACTTTGGCCGCTGGGCGATTGCCGACGCGGGGCAGCGGCGGGCCA
TGGCGGCCGTGTCCGTTGCCGGCCGGACGGCGGCGGCGGCGGCTGCGGCC
AAGACACGGCGCTTTGTCTGCATCGCGGCTCTGACGACGGGGGCGGCGAA
AGTTGATAATCCGACGGCGCGAGCCTGGGCCGTGGAGAGGCCGCTTGGAC
CGCACGCGGTGCTGGCGGAGCTCGGGCGGAACGAATGCTTTCTTCGGGAC
TTGGGCCACCAGCCCCGTACAAATTCAATCATGTAA
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