mRNA_P-wetherbeei_contig53775.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53775.1.1
Unique NamemRNA_P-wetherbeei_contig53775.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53775.1.1 vs. uniprot
Match: A0A6B7EVE1_9PHAE (30S ribosomal protein S1 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVE1_9PHAE)

HSP 1 Score: 319 bits (818), Expect = 1.760e-108
Identity = 160/178 (89.89%), Postives = 172/178 (96.63%), Query Frame = 1
Query:    1 FNKFGLILSKYSYKTKTNDILAGIVVGVESNYILVDLGLEQVCFLPLKEISISSLTNKFGLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIYGRFGQSLGKGKLITFNSLSFFVLNINIPKYYLRLNNNKLFMPFKFLEIKDSFHIAHISSKLSVFNKLNK 534
            FNKFGLILSKYSYK KTNDILAGIVVGVESNY+LVD+GL+QVCFLPLKEISIS +T K  LLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIY +FG+SLGKGKLITF+SLSFFVLNINIPKYYL+LNNNKLF+PFKFLEIKDSFHIAHISSKL+VFNK+N+
Sbjct:   12 FNKFGLILSKYSYKIKTNDILAGIVVGVESNYVLVDVGLDQVCFLPLKEISISPITKKIDLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIYAKFGESLGKGKLITFDSLSFFVLNINIPKYYLKLNNNKLFIPFKFLEIKDSFHIAHISSKLAVFNKVNR 189          
BLAST of mRNA_P-wetherbeei_contig53775.1.1 vs. uniprot
Match: D1J709_ECTSI (Chloroplast 30S ribosomal protein S1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J709_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 1.190e-94
Identity = 141/178 (79.21%), Postives = 158/178 (88.76%), Query Frame = 1
Query:    1 FNKFGLILSKYSYKTKTNDILAGIVVGVESNYILVDLGLEQVCFLPLKEISISSLTNKFGLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIYGRFGQSLGKGKLITFNSLSFFVLNINIPKYYLRLNNNKLFMPFKFLEIKDSFHIAHISSKLSVFNKLNK 534
            FNKFGLILS+YSYK KTNDILAGI++GVESNY+LVDLGLEQVCFLPLKEIS   + N   LLN+NY+GEFLIL+INK SNRII+SMKRVQSIYLWNRLRQIDFKNITIY +F +SL KGKLI FN L FF LNINIPKYYLR NN  LFMPFKFLE+KDSFHIA +SSKL++F+K+NK
Sbjct:   12 FNKFGLILSQYSYKVKTNDILAGIIIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNVNYVGEFLILDINKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKFEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINK 189          
BLAST of mRNA_P-wetherbeei_contig53775.1.1 vs. uniprot
Match: A0A5A4MJF2_9PHAE (30S ribosomal protein S1 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MJF2_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 3.510e-94
Identity = 144/179 (80.45%), Postives = 159/179 (88.83%), Query Frame = 1
Query:    1 FNKFGLILSKYSYKTKTNDILAGIVVGVESNYILVDLGLEQVCFLPLKEISISS-LTNKFGLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIYGRFGQSLGKGKLITFNSLSFFVLNINIPKYYLRLNNNKLFMPFKFLEIKDSFHIAHISSKLSVFNKLNK 534
            FNKFGLILSKYSYK KT+DILAGI++G+ESNY LVDLGLEQVCFLPLKEISISS ++    LLN+N IGEFLIL+IN+NSNRI+VSMKRVQSIYLWNRLRQIDF NITIY +F +SL KGKLI FN L FFVLNINIPKYYLR  N  LFMPFKFLE+KD FHIAHISSKL+VFNK+NK
Sbjct:   12 FNKFGLILSKYSYKVKTDDILAGIIIGIESNYALVDLGLEQVCFLPLKEISISSPISGPIDLLNVNSIGEFLILDINQNSNRIMVSMKRVQSIYLWNRLRQIDFSNITIYAKFNKSLPKGKLIIFNGLLFFVLNINIPKYYLRAKNKNLFMPFKFLEVKDYFHIAHISSKLAVFNKVNK 190          
BLAST of mRNA_P-wetherbeei_contig53775.1.1 vs. uniprot
Match: A0A1I9LVS8_9PHAE (30S ribosomal protein S1 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVS8_9PHAE)

HSP 1 Score: 271 bits (694), Expect = 1.230e-89
Identity = 134/178 (75.28%), Postives = 156/178 (87.64%), Query Frame = 1
Query:    1 FNKFGLILSKYSYKTKTNDILAGIVVGVESNYILVDLGLEQVCFLPLKEISISSLTNKFGLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIYGRFGQSLGKGKLITFNSLSFFVLNINIPKYYLRLNNNKLFMPFKFLEIKDSFHIAHISSKLSVFNKLNK 534
            FNKFGLILSKYSYK KTNDILAGI++ VESNY LVDLGLE+VCFLP  EISIS++++   LL +NYIGEFLIL++N NSNRIIVS+K VQSIYLWNRLRQIDF N+TIY +F ++L KGKLI FN L FFVLNI+IPKYY R+NN  LF+PFKFLEIKDSFHI H+SSKL++FNK+NK
Sbjct:   12 FNKFGLILSKYSYKVKTNDILAGIIIAVESNYALVDLGLEKVCFLPFDEISISTISDPSDLLKLNYIGEFLILDMNNNSNRIIVSIKGVQSIYLWNRLRQIDFANLTIYAKFERNLIKGKLINFNGLFFFVLNIHIPKYYQRVNNKNLFIPFKFLEIKDSFHIGHVSSKLAIFNKINK 189          
BLAST of mRNA_P-wetherbeei_contig53775.1.1 vs. uniprot
Match: A0A0R6M9B1_UNDPI (30S ribosomal protein S1 n=11 Tax=Laminariales TaxID=2886 RepID=A0A0R6M9B1_UNDPI)

HSP 1 Score: 266 bits (681), Expect = 1.170e-87
Identity = 131/178 (73.60%), Postives = 152/178 (85.39%), Query Frame = 1
Query:    1 FNKFGLILSKYSYKTKTNDILAGIVVGVESNYILVDLGLEQVCFLPLKEISISSLTNKFGLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIYGRFGQSLGKGKLITFNSLSFFVLNINIPKYYLRLNNNKLFMPFKFLEIKDSFHIAHISSKLSVFNKLNK 534
            FNKFGLILSKYSY+ K NDILAGI++GVESNY LVDLGLEQ+CFLPLKEISI    +   LLN N++GEFLIL+I  N NRIIVS+KR++SIYLWNRLRQIDF N+TIY +  + LGKGKL+ FN L+FFVLN NIPKYYLR NN  LFMPFKFLEIKD FHIAH+SSKL++F+K+NK
Sbjct:   12 FNKFGLILSKYSYQIKKNDILAGIIIGVESNYALVDLGLEQICFLPLKEISIYPTIDPSELLNTNFVGEFLILDITNNHNRIIVSLKRLESIYLWNRLRQIDFTNMTIYAKIEKPLGKGKLVIFNGLNFFVLNSNIPKYYLRTNNKNLFMPFKFLEIKDYFHIAHVSSKLAIFSKVNK 189          
BLAST of mRNA_P-wetherbeei_contig53775.1.1 vs. uniprot
Match: A0A5B9RE09_9PHAE (30S ribosomal protein S1 n=2 Tax=Laminariales TaxID=2886 RepID=A0A5B9RE09_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 3.850e-86
Identity = 128/178 (71.91%), Postives = 152/178 (85.39%), Query Frame = 1
Query:    1 FNKFGLILSKYSYKTKTNDILAGIVVGVESNYILVDLGLEQVCFLPLKEISISSLTNKFGLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIYGRFGQSLGKGKLITFNSLSFFVLNINIPKYYLRLNNNKLFMPFKFLEIKDSFHIAHISSKLSVFNKLNK 534
            FNKFGLILSKYSY+ K NDILAGI++G+ESNY LVDLGLEQ+CFLPLKEISI    +   LLN N++GEFLI +I  NS+RIIVS+KR++SIYLWNRLRQIDF N+TIY +  +SLGKGKL+ FN L FFVLN NIPKYYLR NN  LFMPFKFLE+KD FHIAH+SS+L++F+K+NK
Sbjct:   12 FNKFGLILSKYSYQIKKNDILAGIIIGIESNYALVDLGLEQICFLPLKEISIYPTMDPRELLNTNFVGEFLIFDIINNSSRIIVSLKRLESIYLWNRLRQIDFTNMTIYAKIQKSLGKGKLVIFNGLRFFVLNSNIPKYYLRTNNKNLFMPFKFLEVKDYFHIAHVSSRLAIFSKVNK 189          
BLAST of mRNA_P-wetherbeei_contig53775.1.1 vs. uniprot
Match: A0A8F0F7Y6_9PHAE (Ribosomal protein S1 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Y6_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 5.120e-86
Identity = 126/178 (70.79%), Postives = 154/178 (86.52%), Query Frame = 1
Query:    1 FNKFGLILSKYSYKTKTNDILAGIVVGVESNYILVDLGLEQVCFLPLKEISISSLTNKFGLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIYGRFGQSLGKGKLITFNSLSFFVLNINIPKYYLRLNNNKLFMPFKFLEIKDSFHIAHISSKLSVFNKLNK 534
            FNKFGLILSKYSY+ K NDILAGI++G+ESNY LVDLGL+Q+CFLP++E++I    +   LLNIN+IGEFLILNI KN +RII+S+KR++SIYLWNRLRQ+DF NITIY +  +SLGKGKLI FN L FFVLN NIPKYYLR NN  LFMPFKFLE+KDSFHIAH +SKL++F+K+++
Sbjct:   12 FNKFGLILSKYSYQIKKNDILAGIIIGIESNYALVDLGLDQICFLPIEELAIYLTVDPHKLLNINFIGEFLILNITKNQSRIILSLKRIESIYLWNRLRQLDFTNITIYAKIEKSLGKGKLINFNGLVFFVLNSNIPKYYLRGNNKNLFMPFKFLEVKDSFHIAHTNSKLAIFSKVSR 189          
BLAST of mRNA_P-wetherbeei_contig53775.1.1 vs. uniprot
Match: A0A8F0FAQ9_9PHAE (Ribosomal protein S1 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FAQ9_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 3.140e-85
Identity = 126/178 (70.79%), Postives = 150/178 (84.27%), Query Frame = 1
Query:    1 FNKFGLILSKYSYKTKTNDILAGIVVGVESNYILVDLGLEQVCFLPLKEISISSLTNKFGLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIYGRFGQSLGKGKLITFNSLSFFVLNINIPKYYLRLNNNKLFMPFKFLEIKDSFHIAHISSKLSVFNKLNK 534
            FNKFGLILSKYSY+ K NDILAGI++G+ESNY LVDLGLEQ+CFLPLKEISI  L N   LLN N++GEFLIL+I  N +RIIVS+KR++SIYLWNRLRQ+DF N+TIY +  + LGKGKL+ FN L FFVLN+NIPKYYLR N   LFMPFKFLE+KD FHIA +SS+L++F K+NK
Sbjct:   12 FNKFGLILSKYSYQIKKNDILAGIIIGLESNYALVDLGLEQICFLPLKEISIYPLVNTRELLNTNFVGEFLILDITNNHSRIIVSLKRLESIYLWNRLRQLDFTNMTIYAKIEKPLGKGKLVIFNGLKFFVLNLNIPKYYLRTNKKNLFMPFKFLEVKDYFHIAQVSSRLAIFTKVNK 189          
BLAST of mRNA_P-wetherbeei_contig53775.1.1 vs. uniprot
Match: A0A8F0F8H5_MACPY (Ribosomal protein S1 n=13 Tax=Laminariales TaxID=2886 RepID=A0A8F0F8H5_MACPY)

HSP 1 Score: 254 bits (649), Expect = 9.030e-83
Identity = 123/178 (69.10%), Postives = 149/178 (83.71%), Query Frame = 1
Query:    1 FNKFGLILSKYSYKTKTNDILAGIVVGVESNYILVDLGLEQVCFLPLKEISISSLTNKFGLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIYGRFGQSLGKGKLITFNSLSFFVLNINIPKYYLRLNNNKLFMPFKFLEIKDSFHIAHISSKLSVFNKLNK 534
            FNKFGLILSKYSY+ K NDILAGI++G+ESNY LVDLGLEQ+CFLP+KEISI    +   LLN N++ EFLIL+I  + +RIIVS+KR++SIYLWNRLRQIDF N+TIY +  + LGKGKL+ FN L FFVLN NIPKYYLR  N  LFMPFKFLE+KD FHIAH+SS+L++F+K+NK
Sbjct:   12 FNKFGLILSKYSYQIKKNDILAGIIIGIESNYALVDLGLEQICFLPIKEISIYPTIDPRELLNSNFVSEFLILDITNDHSRIIVSLKRLESIYLWNRLRQIDFPNMTIYAKIEKPLGKGKLVIFNGLRFFVLNANIPKYYLRTKNKNLFMPFKFLEVKDYFHIAHVSSRLAIFSKVNK 189          
BLAST of mRNA_P-wetherbeei_contig53775.1.1 vs. uniprot
Match: A0A8F0F9U3_9PHAE (Ribosomal protein S1 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9U3_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 2.980e-81
Identity = 120/177 (67.80%), Postives = 146/177 (82.49%), Query Frame = 1
Query:    1 FNKFGLILSKYSYKTKTNDILAGIVVGVESNYILVDLGLEQVCFLPLKEISISSLTNKFGLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIYGRFGQSLGKGKLITFNSLSFFVLNINIPKYYLRLNNNKLFMPFKFLEIKDSFHIAHISSKLSVFNKLN 531
            FNKFGL+LSKYSY+ K NDILAGIV+G+ESNY LVD GLEQ+CFLPLKEISI    +    LNIN+IGEF IL+I    NRII+S++R++SIYLWNRLRQIDF NITIY +  +S+GKGKL  FN L  FVLN NIPKYYLR++   +FMPFKFLE+KD +H+AHISSKL++F+K+N
Sbjct:   12 FNKFGLLLSKYSYQAKKNDILAGIVIGIESNYALVDFGLEQICFLPLKEISICPTLDLREFLNINFIGEFSILDITNRQNRIIISLRRIESIYLWNRLRQIDFSNITIYAKIEKSIGKGKLTIFNGLLLFVLNSNIPKYYLRIDRKNIFMPFKFLEVKDYYHVAHISSKLAIFSKVN 188          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53775.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B7EVE1_9PHAE1.760e-10889.8930S ribosomal protein S1 n=1 Tax=Cladosiphon okamu... [more]
D1J709_ECTSI1.190e-9479.21Chloroplast 30S ribosomal protein S1 n=2 Tax=Ectoc... [more]
A0A5A4MJF2_9PHAE3.510e-9480.4530S ribosomal protein S1 n=5 Tax=Scytosiphonaceae ... [more]
A0A1I9LVS8_9PHAE1.230e-8975.2830S ribosomal protein S1 n=1 Tax=Pleurocladia lacu... [more]
A0A0R6M9B1_UNDPI1.170e-8773.6030S ribosomal protein S1 n=11 Tax=Laminariales Tax... [more]
A0A5B9RE09_9PHAE3.850e-8671.9130S ribosomal protein S1 n=2 Tax=Laminariales TaxI... [more]
A0A8F0F7Y6_9PHAE5.120e-8670.79Ribosomal protein S1 n=2 Tax=Laminariales TaxID=28... [more]
A0A8F0FAQ9_9PHAE3.140e-8570.79Ribosomal protein S1 n=2 Tax=Ecklonia TaxID=105406... [more]
A0A8F0F8H5_MACPY9.030e-8369.10Ribosomal protein S1 n=13 Tax=Laminariales TaxID=2... [more]
A0A8F0F9U3_9PHAE2.980e-8167.80Ribosomal protein S1 n=1 Tax=Chorda asiatica TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53775contigP-wetherbeei_contig53775:2..535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1496688.ER33_14065
Preferred namerps1a
PFAMsS1
Model size534
Max annot lvl1117|Cyanobacteria
KEGG koko:K02945
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
Exons1
Evalue1e-15
EggNOG OGsCOG0539@1|root,COG0539@2|Bacteria,1G11B@1117|Cyanobacteria,22S8X@167375|Cyanobium
DescriptionRibosomal protein S1
Cds size534
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186803.9805076-CDS-P-wetherbeei_contig53775:1..5351683186803.9805076-CDS-P-wetherbeei_contig53775:1..535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53775 2..535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53775.1.1prot_P-wetherbeei_contig53775.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53775 2..535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53775.1.1

>prot_P-wetherbeei_contig53775.1.1 ID=prot_P-wetherbeei_contig53775.1.1|Name=mRNA_P-wetherbeei_contig53775.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp
FNKFGLILSKYSYKTKTNDILAGIVVGVESNYILVDLGLEQVCFLPLKEI
SISSLTNKFGLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQ
IDFKNITIYGRFGQSLGKGKLITFNSLSFFVLNINIPKYYLRLNNNKLFM
PFKFLEIKDSFHIAHISSKLSVFNKLNK
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mRNA from alignment at P-wetherbeei_contig53775:2..535-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53775.1.1 ID=mRNA_P-wetherbeei_contig53775.1.1|Name=mRNA_P-wetherbeei_contig53775.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig53775:2..535- (Phaeothamnion wetherbeei SAG_119_79)
TTTAATAAATTTGGCCTGATCCTCTCAAAGTATAGTTACAAAACAAAGAC AAATGATATATTGGCTGGTATTGTAGTTGGAGTAGAATCAAATTATATTC TCGTCGATCTTGGCTTAGAGCAAGTATGTTTTTTACCATTAAAAGAAATT TCTATTTCTTCATTAACAAATAAATTTGGTCTTCTAAATATTAATTATAT TGGAGAATTTTTAATTCTTAATATTAATAAAAATTCTAATAGAATAATTG TCTCAATGAAACGAGTTCAATCCATTTATTTATGGAATCGCTTAAGACAA ATAGATTTTAAAAATATAACTATTTATGGTAGATTTGGGCAATCCTTAGG AAAAGGAAAGCTAATAACCTTTAATAGTTTATCTTTTTTTGTGTTAAATA TAAATATTCCAAAATATTATCTTAGGCTAAATAATAATAAACTTTTTATG CCTTTTAAATTTTTAGAAATTAAAGATTCTTTTCATATTGCTCATATCAG TTCTAAATTATCTGTTTTTAATAAGCTAAATAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53775:2..535-

>mRNA_P-wetherbeei_contig53775.1.1 ID=mRNA_P-wetherbeei_contig53775.1.1|Name=mRNA_P-wetherbeei_contig53775.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig53775:2..535- (Phaeothamnion wetherbeei SAG_119_79)
TTTAATAAATTTGGCCTGATCCTCTCAAAGTATAGTTACAAAACAAAGAC
AAATGATATATTGGCTGGTATTGTAGTTGGAGTAGAATCAAATTATATTC
TCGTCGATCTTGGCTTAGAGCAAGTATGTTTTTTACCATTAAAAGAAATT
TCTATTTCTTCATTAACAAATAAATTTGGTCTTCTAAATATTAATTATAT
TGGAGAATTTTTAATTCTTAATATTAATAAAAATTCTAATAGAATAATTG
TCTCAATGAAACGAGTTCAATCCATTTATTTATGGAATCGCTTAAGACAA
ATAGATTTTAAAAATATAACTATTTATGGTAGATTTGGGCAATCCTTAGG
AAAAGGAAAGCTAATAACCTTTAATAGTTTATCTTTTTTTGTGTTAAATA
TAAATATTCCAAAATATTATCTTAGGCTAAATAATAATAAACTTTTTATG
CCTTTTAAATTTTTAGAAATTAAAGATTCTTTTCATATTGCTCATATCAG
TTCTAAATTATCTGTTTTTAATAAGCTAAATAAA
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