mRNA_P-wetherbeei_contig53770.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53770.1.1
Unique NamemRNA_P-wetherbeei_contig53770.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig53770.1.1 vs. uniprot
Match: A0A3D5DE20_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DE20_9GAMM)

HSP 1 Score: 70.5 bits (171), Expect = 1.880e-11
Identity = 49/126 (38.89%), Postives = 71/126 (56.35%), Query Frame = 1 
Query:   43 QDLLRATLARLAQLQASHVEQWDRSGLYRLREALSAGEKAYSETRFRAAQEAYRAALAHADQIETRLPQVIADLLNEGNGALLAGNSAQADTAFTQVLAIRPAHPEATLGRARAATLDRVLALVEQ 420
            Q  L   LA + +L+  +V  W  +   + +  +  GEKAY E R+  A++ Y AA    + IE RL  VI + + +G   L A +S  A  AF  VL+I+P+H +A  G ARA TLDRVLAL+ +
Sbjct:  114 QTQLERALALVVRLETHNVLVWAANDFDQAQGNIKLGEKAYREQRYGDARKYYTAATEKLESIEARLDSVIFEAIEDGFLQLEAKDSTAATKAFNFVLSIQPSHGQAKRGLARAQTLDRVLALINE 239
[Close]
BLAST of mRNA_P-wetherbeei_contig53770.1.1 vs. uniprot
Match: A0A1E8CLQ1_9GAMM (Uncharacterized protein n=1 Tax=Pseudohongiella acticola TaxID=1524254 RepID=A0A1E8CLQ1_9GAMM)

HSP 1 Score: 60.1 bits (144), Expect = 7.880e-8
Identity = 48/136 (35.29%), Postives = 68/136 (50.00%), Query Frame = 1 
Query:    7 DEQATAGARRDAQDLLRATLARLAQLQASHVEQWDRSGLYRLREALSAGEKAYSETRFRAAQEAYRAALAHADQIETRLPQVIADLLNEGNGALLAGNSAQADTAFTQVLAIRPAHPEATLGRARAATLDRVLALV 414
            DE   +  RR+AQD L + L R   L    V QW +S       A   G++ Y  T F  A  AY+ +     +++ R PQV+ DL+++G  A++  +SA A   FT  L + P    A  G ARA TLD V  L+
Sbjct:   72 DEAQRSRQRREAQDALASLLERQQALDDMAVTQWAQSDYEAAVAAARRGDEFYRNTEFVQAALAYQESDLALSRLQERAPQVLDDLISDGEAAIIDQDSALALERFTLALRLGPDSARAQQGLARAQTLDEVENLI 207
[Close]
BLAST of mRNA_P-wetherbeei_contig53770.1.1 vs. uniprot
Match: A0A523NUL7_9PROT (Uncharacterized protein n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NUL7_9PROT)

HSP 1 Score: 57.8 bits (138), Expect = 5.050e-7
Identity = 45/130 (34.62%), Postives = 62/130 (47.69%), Query Frame = 1 
Query:   31 RRDAQDLLRATLARLAQLQASHVEQWDRSGLYRLREALSAGEKAYSETRFRAAQEAYRAALAHADQIETRLPQVIADLLNEGNGALLAGNSAQADTAFTQVLAIRPAHPEATLGRARAATLDRVLALVEQ 420
            RR  Q  L   LA +  L+A +V QW          A+S GEKAY+E R+ AAQ AY  A+    +I  R  +V++  ++EG   + + NS  A                   G ARA TLD+V ALV +
Sbjct:  103 RRTNQARLEQALALVTHLKARNVTQWAAVEFEAAINAISVGEKAYTEQRYEAAQSAYAEAIESLQRIAARTEEVVSQAVDEGFLEIASRNSTAAXXXXXXXXXXXXXXXXXXAGLARARTLDQVTALVNE 232
[Close]
BLAST of mRNA_P-wetherbeei_contig53770.1.1 vs. uniprot
Match: A0A849GCC2_9GAMM (Uncharacterized protein n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A849GCC2_9GAMM)

HSP 1 Score: 53.9 bits (128), Expect = 1.070e-5
Identity = 43/134 (32.09%), Postives = 66/134 (49.25%), Query Frame = 1 
Query:   19 TAGARRDAQDLLRATLARLAQLQASHVEQWDRSGLYRLREALSAGEKAYSETRFRAAQEAYRAALAHADQIETRLPQVIADLLNEGNGALLAGNSAQADTAFTQVLAIRPAHPEATLGRARAATLDRVLALVEQ 420
            T  AR +A+ +L   L+    L+   V++W      R +E  +AG+KAY E  + AA+  Y  A++  + +  R+       L     A  AG+  +A  A+   +AI P HP A  G  RA  L+ VL LV+Q
Sbjct:   22 TERARFNAEMILGELLSNFETLEQRGVQRWAGVPFSRAQELYAAGDKAYLERDYVAAERLYLDAISVVEPLFDRIEPEFEKALTAAEAAFEAGDRPEALRAYELAVAITPNHPVARAGYERARNLESVLQLVDQ 155
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53770.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A3D5DE20_9GAMM1.880e-1138.89Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A1E8CLQ1_9GAMM7.880e-835.29Uncharacterized protein n=1 Tax=Pseudohongiella ac... [more]
A0A523NUL7_9PROT5.050e-734.62Uncharacterized protein n=2 Tax=Proteobacteria bac... [more]
A0A849GCC2_9GAMM1.070e-532.09Uncharacterized protein n=1 Tax=Woeseiaceae bacter... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53770contigP-wetherbeei_contig53770:1..420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1415778.JQMM01000001_gene1141
PFAMsTPR_8
Model size420
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.98e-14
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1RC07@1224|Proteobacteria,1S36N@1236|Gammaproteobacteria,1J5XV@118884|unclassified Gammaproteobacteria
DescriptionTetratricopeptide repeat
Cds size420
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186803.9067538-CDS-P-wetherbeei_contig53770:0..4201683186803.9067538-CDS-P-wetherbeei_contig53770:0..420Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53770 1..420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53770.1.1prot_P-wetherbeei_contig53770.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53770 1..420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53770.1.1

>prot_P-wetherbeei_contig53770.1.1 ID=prot_P-wetherbeei_contig53770.1.1|Name=mRNA_P-wetherbeei_contig53770.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
RDDEQATAGARRDAQDLLRATLARLAQLQASHVEQWDRSGLYRLREALSA
GEKAYSETRFRAAQEAYRAALAHADQIETRLPQVIADLLNEGNGALLAGN
SAQADTAFTQVLAIRPAHPEATLGRARAATLDRVLALVEQ
back to top

mRNA from alignment at P-wetherbeei_contig53770:1..420-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53770.1.1 ID=mRNA_P-wetherbeei_contig53770.1.1|Name=mRNA_P-wetherbeei_contig53770.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig53770:1..420- (Phaeothamnion wetherbeei SAG_119_79)
CGCGATGATGAACAGGCGACCGCCGGCGCACGCCGCGACGCGCAGGATCT
GTTGCGCGCCACGCTCGCGCGCCTCGCGCAGTTACAAGCCAGCCATGTAG
AGCAGTGGGACCGCAGTGGCCTGTATCGACTGCGCGAAGCACTCAGTGCG
GGCGAAAAGGCCTATAGCGAAACGCGCTTTCGCGCCGCGCAGGAAGCTTA
TCGCGCAGCGCTCGCGCACGCGGATCAAATCGAGACACGCCTGCCGCAGG
TGATCGCGGACTTATTGAATGAAGGCAATGGCGCGCTGCTGGCGGGTAAT
TCCGCGCAGGCTGACACGGCCTTTACTCAGGTACTCGCGATCCGGCCCGC
GCACCCCGAGGCGACCCTCGGTCGCGCGCGCGCCGCGACCCTGGATCGCG
TGCTGGCGTTGGTCGAACAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig53770:1..420-

>mRNA_P-wetherbeei_contig53770.1.1 ID=mRNA_P-wetherbeei_contig53770.1.1|Name=mRNA_P-wetherbeei_contig53770.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig53770:1..420- (Phaeothamnion wetherbeei SAG_119_79)
CGCGATGATGAACAGGCGACCGCCGGCGCACGCCGCGACGCGCAGGATCT
GTTGCGCGCCACGCTCGCGCGCCTCGCGCAGTTACAAGCCAGCCATGTAG
AGCAGTGGGACCGCAGTGGCCTGTATCGACTGCGCGAAGCACTCAGTGCG
GGCGAAAAGGCCTATAGCGAAACGCGCTTTCGCGCCGCGCAGGAAGCTTA
TCGCGCAGCGCTCGCGCACGCGGATCAAATCGAGACACGCCTGCCGCAGG
TGATCGCGGACTTATTGAATGAAGGCAATGGCGCGCTGCTGGCGGGTAAT
TCCGCGCAGGCTGACACGGCCTTTACTCAGGTACTCGCGATCCGGCCCGC
GCACCCCGAGGCGACCCTCGGTCGCGCGCGCGCCGCGACCCTGGATCGCG
TGCTGGCGTTGGTCGAACAG
back to top