mRNA_P-wetherbeei_contig53759.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53759.2.1
Unique NamemRNA_P-wetherbeei_contig53759.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53759.2.1 vs. uniprot
Match: Q89E79_BRADU (Transcriptional regulatory protein n=153 Tax=Bradyrhizobiaceae TaxID=41294 RepID=Q89E79_BRADU)

HSP 1 Score: 258 bits (660), Expect = 1.690e-84
Identity = 131/141 (92.91%), Postives = 134/141 (95.04%), Query Frame = 1
Query:    1 VLPPQHPLAGKPVISAADLSGLPFIGLERGTRLGEAVRDSFARAGAPFRPTVEVRYCNTACVLAAAGVGAAVVDPFSPLQNGGGGLVVRPFTPTTHAVAYMLWSEAEPLSRLAKAFLAEVRKESALLERTAPHQQHGAGID 423
            VLPPQHPLA +PVISAADLSGLPFIGLERGTRLGEAVRDSFARAGAPFRPTVEVRYCNTACVLAAAGVGAAVVDPFSP QNGG GLVVRPFTPTTHAVAYMLWSEAEPLSRLAKAFL+EVRK+SALLE  APHQQHGA  D
Sbjct:  168 VLPPQHPLADRPVISAADLSGLPFIGLERGTRLGEAVRDSFARAGAPFRPTVEVRYCNTACVLAAAGVGAAVVDPFSPRQNGGNGLVVRPFTPTTHAVAYMLWSEAEPLSRLAKAFLSEVRKQSALLEGPAPHQQHGAESD 308          
BLAST of mRNA_P-wetherbeei_contig53759.2.1 vs. uniprot
Match: A0A0E4FUS7_9BRAD (Transcriptional regulatory protein n=1 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=A0A0E4FUS7_9BRAD)

HSP 1 Score: 236 bits (601), Expect = 4.440e-78
Identity = 120/129 (93.02%), Postives = 123/129 (95.35%), Query Frame = 1
Query:   37 VISAADLSGLPFIGLERGTRLGEAVRDSFARAGAPFRPTVEVRYCNTACVLAAAGVGAAVVDPFSPLQNGGGGLVVRPFTPTTHAVAYMLWSEAEPLSRLAKAFLAEVRKESALLERTAPHQQHGAGID 423
            +ISAADLSGLPFIGLERGTRLGEAVRDSFARAGAPFRPTVEVRYCNTACVLAAAGVGAAVVDPFSP QNGG GLVVRPFTPTTHAVAYMLWSEAEPLSRLAKAFL+EVRK+SALLE  APHQQHGA  D
Sbjct:    1 MISAADLSGLPFIGLERGTRLGEAVRDSFARAGAPFRPTVEVRYCNTACVLAAAGVGAAVVDPFSPRQNGGNGLVVRPFTPTTHAVAYMLWSEAEPLSRLAKAFLSEVRKQSALLEGPAPHQQHGAESD 129          
BLAST of mRNA_P-wetherbeei_contig53759.2.1 vs. uniprot
Match: A0A1H5G3Y6_9BRAD (DNA-binding transcriptional regulator, LysR family n=12 Tax=Bradyrhizobium TaxID=374 RepID=A0A1H5G3Y6_9BRAD)

HSP 1 Score: 211 bits (536), Expect = 9.210e-66
Identity = 110/133 (82.71%), Postives = 118/133 (88.72%), Query Frame = 1
Query:    1 VLPPQHPLAGKPVISAADLSGLPFIGLERGTRLGEAVRDSFARAGAPFRPTVEVRYCNTACVLAAAGVGAAVVDPFSPLQNGGGGLVVRPFTPTTHAVAYMLWSEAEPLSRLAKAFLAEVRKESALLERTAPH 399
            VLPP+HPLA  PVISA+DL GLPFIGLERGTRLGEAVR+SFARAGAPF+PTVEVRYCNTACVLAAAGVGAAVVDPFSP Q G   LVVRPFTP T AVA+MLWSEAEPLSRLAKAFL EVRK S +L  T+P+
Sbjct:  168 VLPPKHPLAEHPVISASDLVGLPFIGLERGTRLGEAVRESFARAGAPFQPTVEVRYCNTACVLAAAGVGAAVVDPFSPRQAGSHDLVVRPFTPRTPAVAHMLWSEAEPLSRLAKAFLDEVRKASRVLGPTSPY 300          
BLAST of mRNA_P-wetherbeei_contig53759.2.1 vs. uniprot
Match: A0A0R3LN84_9BRAD (Transcriptional regulator n=16 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3LN84_9BRAD)

HSP 1 Score: 206 bits (523), Expect = 7.350e-64
Identity = 107/131 (81.68%), Postives = 115/131 (87.79%), Query Frame = 1
Query:    1 VLPPQHPLAGKPVISAADLSGLPFIGLERGTRLGEAVRDSFARAGAPFRPTVEVRYCNTACVLAAAGVGAAVVDPFSPLQNGGGGLVVRPFTPTTHAVAYMLWSEAEPLSRLAKAFLAEVRKESALLERTA 393
            VLPP HPLA + VISA+DL GLPFIGLERGTRLGEAVR+SFA+AGAPF+PTVEVRYCNTACVLAAAGVGAAVVDPFSP Q+GG  L+VRPFTP T AVAYMLWSEAEPLSRLAKAFL EVR+ S  L   A
Sbjct:  168 VLPPNHPLAERSVISASDLVGLPFIGLERGTRLGEAVRESFAQAGAPFQPTVEVRYCNTACVLAAAGVGAAVVDPFSPRQSGGQDLIVRPFTPKTVAVAYMLWSEAEPLSRLAKAFLNEVRQASRSLHHDA 298          
BLAST of mRNA_P-wetherbeei_contig53759.2.1 vs. uniprot
Match: A0A7Z2PYX2_9BRAD (Transcriptional regulator n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=A0A7Z2PYX2_9BRAD)

HSP 1 Score: 206 bits (523), Expect = 7.800e-64
Identity = 104/125 (83.20%), Postives = 114/125 (91.20%), Query Frame = 1
Query:    1 VLPPQHPLAGKPVISAADLSGLPFIGLERGTRLGEAVRDSFARAGAPFRPTVEVRYCNTACVLAAAGVGAAVVDPFSPLQNGGGGLVVRPFTPTTHAVAYMLWSEAEPLSRLAKAFLAEVRKESA 375
            VLPP HPLA +PVISA+DL GLPFIGLERGTRLGEAVR+SFA+AG+PF+PTVEVRYCNTACVLAAAGVGAAVVDPFSP QNG   L+VRPFTP T A+AYMLWSEAEPLSRLAKAFL EVR+ +A
Sbjct:  168 VLPPNHPLAERPVISASDLVGLPFIGLERGTRLGEAVRESFAQAGSPFQPTVEVRYCNTACVLAAAGVGAAVVDPFSPRQNGSQDLIVRPFTPKTVAIAYMLWSEAEPLSRLAKAFLNEVRQAAA 292          
BLAST of mRNA_P-wetherbeei_contig53759.2.1 vs. uniprot
Match: A0A2M6U8C8_9BRAD (Transcriptional regulator n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A2M6U8C8_9BRAD)

HSP 1 Score: 205 bits (521), Expect = 1.390e-63
Identity = 105/129 (81.40%), Postives = 113/129 (87.60%), Query Frame = 1
Query:    1 VLPPQHPLAGKPVISAADLSGLPFIGLERGTRLGEAVRDSFARAGAPFRPTVEVRYCNTACVLAAAGVGAAVVDPFSPLQNGGGGLVVRPFTPTTHAVAYMLWSEAEPLSRLAKAFLAEVRKESALLER 387
            VLPPQHPLA +PVISA+DL GLPFIGLERGTRLGEAVR SFA+AGA F+PTVEVRYCNTACVLAAAGVG AVVDPFSP QN G GL+V+PF PTT AVAYMLWSEA PLSRLAKAFL EVR  S +L +
Sbjct:  168 VLPPQHPLAAQPVISASDLVGLPFIGLERGTRLGEAVRASFAQAGASFQPTVEVRYCNTACVLAAAGVGVAVVDPFSPRQNSGNGLIVKPFAPTTLAVAYMLWSEAAPLSRLAKAFLDEVRAASQMLTK 296          
BLAST of mRNA_P-wetherbeei_contig53759.2.1 vs. uniprot
Match: A0A1G7ZU60_9BRAD (DNA-binding transcriptional regulator, LysR family n=12 Tax=Bradyrhizobium TaxID=374 RepID=A0A1G7ZU60_9BRAD)

HSP 1 Score: 190 bits (482), Expect = 1.030e-57
Identity = 98/128 (76.56%), Postives = 110/128 (85.94%), Query Frame = 1
Query:    1 VLPPQHPLAGKPVISAADLSGLPFIGLERGTRLGEAVRDSFARAGAPFRPTVEVRYCNTACVLAAAGVGAAVVDPFSPLQNGGGGLVVRPFTPTTHAVAYMLWSEAEPLSRLAKAFLAEVRKESALLE 384
            V+PP+HPL  + VI+A+DL+ LPFIGLERGT+LGEAVR SFA AGAPF+PTVEVRYCNTACVLAAAGVGAAVVDPFSP Q G   LV+RPF P T A+AYMLWSEAEPLSRLA+AFL EVR+ S  LE
Sbjct:  168 VMPPRHPLVDRAVITASDLADLPFIGLERGTQLGEAVRASFASAGAPFQPTVEVRYCNTACVLAAAGVGAAVVDPFSPHQAGSQELVMRPFLPVTPALAYMLWSEAEPLSRLARAFLDEVRRASRQLE 295          
BLAST of mRNA_P-wetherbeei_contig53759.2.1 vs. uniprot
Match: H0TNJ9_9BRAD (Putative Transcriptional regulatory protein, LysR family n=1 Tax=Bradyrhizobium sp. STM 3843 TaxID=551947 RepID=H0TNJ9_9BRAD)

HSP 1 Score: 187 bits (475), Expect = 2.160e-56
Identity = 97/124 (78.23%), Postives = 106/124 (85.48%), Query Frame = 1
Query:    1 VLPPQHPLAGKPVISAADLSGLPFIGLERGTRLGEAVRDSFARAGAPFRPTVEVRYCNTACVLAAAGVGAAVVDPFSPLQNGGGGLVVRPFTPTTHAVAYMLWSEAEPLSRLAKAFLAEVRKES 372
            VLPP+HPLA +PVISAADL+  P IGLERGTRLGEAVR+SFA+AGAPF+P+VEVRYCNTACVLAA GVGAAVVDPFSP Q GG  LVVRPFTP T   AYMLWSEA+PLS LAK F +EVR  S
Sbjct:  168 VLPPKHPLAERPVISAADLADFPLIGLERGTRLGEAVRESFAQAGAPFQPSVEVRYCNTACVLAATGVGAAVVDPFSP-QQGGHDLVVRPFTPATKVSAYMLWSEAKPLSNLAKTFRSEVRNAS 290          
BLAST of mRNA_P-wetherbeei_contig53759.2.1 vs. uniprot
Match: UPI0019B2944E (LysR family transcriptional regulator n=1 Tax=Tardiphaga sp. TaxID=1926292 RepID=UPI0019B2944E)

HSP 1 Score: 186 bits (473), Expect = 2.940e-56
Identity = 97/132 (73.48%), Postives = 110/132 (83.33%), Query Frame = 1
Query:    1 VLPPQHPLAGKPVISAADLSGLPFIGLERGTRLGEAVRDSFARAGAPFRPTVEVRYCNTACVLAAAGVGAAVVDPFSPLQNGGGGLVVRPFTPTTHAVAYMLWSEAEPLSRLAKAFLAEVRKESALLERTAP 396
            VLPP HPL  +P+ISAADL+GLPFIGLERGTRLG+AVR++FA A  PFRPTVEVRYCNTAC+LAAAGVGAAVVDP S  Q+GG  LVVRPFTP   +VAY+LW+E  PLSRLAKAFL EVR+ S   + TAP
Sbjct:  168 VLPPDHPLIDRPLISAADLTGLPFIGLERGTRLGDAVRENFASADVPFRPTVEVRYCNTACMLAAAGVGAAVVDPMSARQHGGQALVVRPFTPKIPSVAYVLWAEEAPLSRLAKAFLEEVRQASQT-DPTAP 298          
BLAST of mRNA_P-wetherbeei_contig53759.2.1 vs. uniprot
Match: M4ZD33_9BRAD (Putative transcriptional regulatory protein, LysR family n=1 Tax=Bradyrhizobium oligotrophicum S58 TaxID=1245469 RepID=M4ZD33_9BRAD)

HSP 1 Score: 179 bits (453), Expect = 5.790e-53
Identity = 101/152 (66.45%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    1 VLPPQHPLAGKPVISAADLSGLPFIGLERGTRLGEAVRDSFARAGAPFRPTVEVRYCNTACVLAAAGVGAAVVDPFSPLQNGGGGLVVRPFTPTTHAVAYMLWSEAEPLSRLAKAFLAEVRKES------------ALLERTAPHQQHGAGI 420
            V+PP+HPLA + VISA DL+G P IGLERGTRLGEAVRDSF +A A F+PTVEVRYCNTACVLAAAGVG AVVDPFSP Q GG  L VRPFTP+T   AYMLWSEA+PLS LAK F  EVR  S            A L  TAP    G GI
Sbjct:  168 VMPPRHPLAERDVISARDLAGFPLIGLERGTRLGEAVRDSFRQADADFQPTVEVRYCNTACVLAAAGVGIAVVDPFSPRQ-GGHDLAVRPFTPSTKVSAYMLWSEAKPLSNLAKTFRNEVRNASRTLAESTEPIASASLPNTAPSPLAGEGI 318          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53759.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q89E79_BRADU1.690e-8492.91Transcriptional regulatory protein n=153 Tax=Brady... [more]
A0A0E4FUS7_9BRAD4.440e-7893.02Transcriptional regulatory protein n=1 Tax=Bradyrh... [more]
A0A1H5G3Y6_9BRAD9.210e-6682.71DNA-binding transcriptional regulator, LysR family... [more]
A0A0R3LN84_9BRAD7.350e-6481.68Transcriptional regulator n=16 Tax=Bradyrhizobium ... [more]
A0A7Z2PYX2_9BRAD7.800e-6483.20Transcriptional regulator n=2 Tax=unclassified Bra... [more]
A0A2M6U8C8_9BRAD1.390e-6381.40Transcriptional regulator n=3 Tax=Bradyrhizobium T... [more]
A0A1G7ZU60_9BRAD1.030e-5776.56DNA-binding transcriptional regulator, LysR family... [more]
H0TNJ9_9BRAD2.160e-5678.23Putative Transcriptional regulatory protein, LysR ... [more]
UPI0019B2944E2.940e-5673.48LysR family transcriptional regulator n=1 Tax=Tard... [more]
M4ZD33_9BRAD5.790e-5366.45Putative transcriptional regulatory protein, LysR ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53759contigP-wetherbeei_contig53759:109..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog335659.S23_11220
PFAMsHTH_1,LysR_substrate
Model size426
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.1e-92
EggNOG OGsCOG0583@1|root,COG0583@2|Bacteria,1NW10@1224|Proteobacteria,2TSUY@28211|Alphaproteobacteria,3JV2A@41294|Bradyrhizobiaceae
DescriptionLysR substrate binding domain
Cds size426
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186803.7749858-CDS-P-wetherbeei_contig53759:108..5341683186803.7749858-CDS-P-wetherbeei_contig53759:108..534Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53759 109..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53759.2.1prot_P-wetherbeei_contig53759.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53759 109..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53759.2.1

>prot_P-wetherbeei_contig53759.2.1 ID=prot_P-wetherbeei_contig53759.2.1|Name=mRNA_P-wetherbeei_contig53759.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
VLPPQHPLAGKPVISAADLSGLPFIGLERGTRLGEAVRDSFARAGAPFRP
TVEVRYCNTACVLAAAGVGAAVVDPFSPLQNGGGGLVVRPFTPTTHAVAY
MLWSEAEPLSRLAKAFLAEVRKESALLERTAPHQQHGAGID*
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mRNA from alignment at P-wetherbeei_contig53759:109..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53759.2.1 ID=mRNA_P-wetherbeei_contig53759.2.1|Name=mRNA_P-wetherbeei_contig53759.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig53759:109..534- (Phaeothamnion wetherbeei SAG_119_79)
GTGCTGCCGCCGCAGCATCCGCTCGCGGGCAAGCCCGTGATCTCGGCAGC GGATCTATCAGGCCTGCCGTTCATCGGGCTCGAGCGCGGCACGCGGCTCG GCGAGGCCGTGCGCGACAGTTTTGCCCGCGCCGGGGCGCCGTTCCGGCCA ACCGTCGAGGTGCGCTACTGCAACACGGCCTGCGTACTGGCGGCCGCCGG CGTCGGCGCCGCGGTGGTCGATCCGTTCTCGCCGCTGCAGAATGGCGGCG GCGGTCTCGTGGTCCGGCCGTTCACGCCGACCACGCATGCGGTAGCCTAT ATGCTCTGGTCGGAAGCCGAGCCGCTGTCCCGGCTGGCCAAGGCTTTTCT CGCCGAGGTCCGCAAGGAAAGCGCGCTCCTGGAGCGCACAGCGCCGCACC AGCAACATGGGGCCGGAATCGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53759:109..534-

>mRNA_P-wetherbeei_contig53759.2.1 ID=mRNA_P-wetherbeei_contig53759.2.1|Name=mRNA_P-wetherbeei_contig53759.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig53759:109..534- (Phaeothamnion wetherbeei SAG_119_79)
GTGCTGCCGCCGCAGCATCCGCTCGCGGGCAAGCCCGTGATCTCGGCAGC
GGATCTATCAGGCCTGCCGTTCATCGGGCTCGAGCGCGGCACGCGGCTCG
GCGAGGCCGTGCGCGACAGTTTTGCCCGCGCCGGGGCGCCGTTCCGGCCA
ACCGTCGAGGTGCGCTACTGCAACACGGCCTGCGTACTGGCGGCCGCCGG
CGTCGGCGCCGCGGTGGTCGATCCGTTCTCGCCGCTGCAGAATGGCGGCG
GCGGTCTCGTGGTCCGGCCGTTCACGCCGACCACGCATGCGGTAGCCTAT
ATGCTCTGGTCGGAAGCCGAGCCGCTGTCCCGGCTGGCCAAGGCTTTTCT
CGCCGAGGTCCGCAAGGAAAGCGCGCTCCTGGAGCGCACAGCGCCGCACC
AGCAACATGGGGCCGGAATCGACTGA
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