mRNA_P-wetherbeei_contig53711.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: UPI001BAC56B8 (hypothetical protein n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BAC56B8) HSP 1 Score: 119 bits (298), Expect = 1.050e-30 Identity = 72/136 (52.94%), Postives = 92/136 (67.65%), Query Frame = 1
Query: 1 WGLMTLLQYLPGLITTSVGANIIATTAAVMIMIVLVVRLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPLLAVAIAAGSISDQVGVTTRLGTLA---DSSFEFLVTMLLTVASARLFDWIGYQVKG 399
W L+TL YL GLIT S A+ IAT A ++++V +VRLAILFPAIAV+APGASL NV ADT+ R+WLILK+ IV LP+LA +A G ISD + + DS E L T+L ++RL+ WIG+QVKG
Sbjct: 112 WALITLPPYLSGLITPSEDADSIATIATAIVVVVALVRLAILFPAIAVDAPGASLRNVLADTKARSWLILKSFFIVLLPVLAGLLAVGLISDLDDLPSWWSAARIAFDSPLELLATVLAAATASRLYGWIGHQVKG 247
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: UPI001BAC138B (hypothetical protein n=4 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BAC138B) HSP 1 Score: 120 bits (300), Expect = 2.200e-30 Identity = 72/136 (52.94%), Postives = 94/136 (69.12%), Query Frame = 1
Query: 1 WGLMTLLQYLPGLITTSVGANIIATTAAVMIMIVLVVRLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPLLAVAIAAGSISDQVGVTTRLGTLA---DSSFEFLVTMLLTVASARLFDWIGYQVKG 399
W L+TL YLPGLIT S A+ IAT A ++++V++VRLAILFPAIAV+APGASL +V ADT+ R+WLILK+ IV LP+LA +A G ISD + + +S E L T+L ++RLF WIG+QVKG
Sbjct: 178 WALITLPPYLPGLITPSEDADSIATIATAIVVVVVLVRLAILFPAIAVDAPGASLRHVLADTKARSWLILKSFFIVLLPVLAGFLAVGLISDLDDLPSWWSAARIALNSPLELLATVLAAATASRLFGWIGHQVKG 313
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: UPI001BACAC36 (hypothetical protein n=1 Tax=Bradyrhizobium sp. JYMT SZCCT0180 TaxID=2807666 RepID=UPI001BACAC36) HSP 1 Score: 96.3 bits (238), Expect = 7.040e-23 Identity = 55/110 (50.00%), Postives = 77/110 (70.00%), Query Frame = 1
Query: 79 AAVMIMIVLVVRLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPLLAVAIAAGSISDQVGVTT---RLGTLADSSFEFLVTMLLTVASARLFDWIGYQVKG 399
A ++++V+++RLAILFPAIA++APGASL +V ADT+ R+WLILK+ IV LP+LA +A G ISD + + T DS E L T+L ++RL+ WIG+QVKG
Sbjct: 30 ATAIVVVVILMRLAILFPAIAIDAPGASLRHVVADTKARSWLILKSFFIVLLPVLAGLLAVGLISDLDDLPSWWPAARTTFDSPLELLATVLAAATASRLYGWIGHQVKG 139
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: UPI001BA86508 (hypothetical protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BA86508) HSP 1 Score: 95.9 bits (237), Expect = 1.330e-22 Identity = 55/106 (51.89%), Postives = 74/106 (69.81%), Query Frame = 1
Query: 91 IMIVLVVRLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPLLAVAIAAGSISDQVGVTTRLGTLA---DSSFEFLVTMLLTVASARLFDWIGYQVKG 399
I++V++VRLAILFPAIAV+APGASL +V ADT+GR+WLILK+ IV LP+LA +A G I D + + DS E L T+L ++RL+ WIG+Q+KG
Sbjct: 45 IVVVVLVRLAILFPAIAVDAPGASLRHVMADTKGRSWLILKSFFIVLLPVLAGLLAVGLIGDLDDLPSWWSAARIAFDSPLELLATVLAAATASRLYGWIGHQMKG 150
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: UPI001C038243 (hypothetical protein n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001C038243) HSP 1 Score: 86.7 bits (213), Expect = 4.630e-18 Identity = 57/142 (40.14%), Postives = 83/142 (58.45%), Query Frame = 1
Query: 1 WGLMTLLQYLPGLITTSVGANIIATTAAVMIMIVLVVRLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPLLAVAIAAGSI------SDQVGVTTRLGTLADSSFE---FLVTMLLTVASARLFDWIGYQVKG 399
W L + YLP + S GA +++ A ++I I ++VRL+IL PAIAV+APGAS+ NV ADTRG W I+K L + P + + ++A + S+ +G + R+ A + F FLV + SARLF IG +VKG
Sbjct: 108 WALANIPIYLPDAVIPSEGAAAVSSIALIVIGIAVMVRLSILLPAIAVDAPGASVANVLADTRGHAWFIVKAYLAIVAPFVLIVLSAALLAWLAGASEILGRSGRVNPAASAFFGALGFLVVTAFMIVSARLFMRIGDRVKG 249
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: A0A431MZB3_9PSEU (Uncharacterized protein n=1 Tax=Pseudonocardiaceae bacterium TaxID=1873463 RepID=A0A431MZB3_9PSEU) HSP 1 Score: 64.3 bits (155), Expect = 1.020e-9 Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 1
Query: 97 IVLVVRLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPLLAVAIAA---------GSISDQVGVTTRLGTLADSSFEFLVTMLLTVASARLFDWIGYQVK 396
+V ++RL +LFPAIAV+A GAS+ N +AD+ G W I+++ L+ LP + VAI IS T +G + + + V +ARLF+WIG +VK
Sbjct: 144 VVAIIRLILLFPAIAVDASGASVANAFADSSGHFWFIVRSTLVAWLPFMIVAIVVIAWVWFAYVSGISYTGTGLTLIGVVLLGAIGTVTMTTSYVIAARLFEWIGSRVK 252
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: A0A537TYV2_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537TYV2_9PROT) HSP 1 Score: 58.2 bits (139), Expect = 4.250e-8 Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 1
Query: 112 RLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPLLAVAIAAGSISDQVGVTTRLGTLADSSFEFLVTMLLTVASARLFDWIGYQVK 396
RL+ILFPAIAV+A GAS NV +DTRG W I AL+ SLP + V IA + VG T + + D + L V ++RL+ +G V
Sbjct: 46 RLSILFPAIAVDAAGASWRNVMSDTRGYAWQIFLIALLASLPFVPVGIA---LWFSVGHGT-VAAVTDGVLGIISITLFVVIASRLYQRLGNNVN 136
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: A0A2V6MB92_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V6MB92_9BACT) HSP 1 Score: 58.2 bits (139), Expect = 2.030e-7 Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 1
Query: 112 RLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPLLAVAIAAGSISDQVGVTTRLGTLADSSFEFLVTMLLTVASARLFDWIGYQVK 396
RL+ILFPAIAV+A GAS NV +DTRG W I AL+ SLP + V IA + VG T + + D + L V ++RL+ +G V
Sbjct: 172 RLSILFPAIAVDAAGASWRNVMSDTRGYAWQIFLIALLASLPFVPVGIA---LWFSVGHGT-VAAVTDGVLGIISITLFVVIASRLYQRLGNNVN 262
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: UPI001FFE3D53 (hypothetical protein n=1 Tax=Bradyrhizobium sp. 200 TaxID=2782665 RepID=UPI001FFE3D53) HSP 1 Score: 52.8 bits (125), Expect = 1.510e-5 Identity = 36/106 (33.96%), Postives = 60/106 (56.60%), Query Frame = 1
Query: 103 LVVRLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPL--LAVAIAA------GSISDQVGVTTRLGTLADSSFEFLVTMLLTVASARLFDWIGYQVK 396
+V +L +LFPA+AV+APGA N ++D+R R W +L ++ +P+ LAVA+A GS++ V G L + + + L TV ++RL+ IG ++
Sbjct: 136 MVTQLLVLFPAVAVDAPGAGWQNAFSDSRSRIWFVLAVTILPFIPIGMLAVAVAPLLRFSPGSLTGLVA-----GMLWVGATLLIASTLGTVIASRLYQVIGDRLN 236 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig53711.1.1 >prot_P-wetherbeei_contig53711.1.1 ID=prot_P-wetherbeei_contig53711.1.1|Name=mRNA_P-wetherbeei_contig53711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp MTLLQYLPGLITTSVGANIIATTAAVMIMIVLVVRLAILFPAIAVNAPGAback to top mRNA from alignment at P-wetherbeei_contig53711:13..411+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig53711.1.1 ID=mRNA_P-wetherbeei_contig53711.1.1|Name=mRNA_P-wetherbeei_contig53711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig53711:13..411+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig53711:13..411+ >mRNA_P-wetherbeei_contig53711.1.1 ID=mRNA_P-wetherbeei_contig53711.1.1|Name=mRNA_P-wetherbeei_contig53711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig53711:13..411+ (Phaeothamnion wetherbeei SAG_119_79)back to top |