mRNA_P-wetherbeei_contig53711.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53711.1.1
Unique NamemRNA_P-wetherbeei_contig53711.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: UPI001BAC56B8 (hypothetical protein n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BAC56B8)

HSP 1 Score: 119 bits (298), Expect = 1.050e-30
Identity = 72/136 (52.94%), Postives = 92/136 (67.65%), Query Frame = 1
Query:    1 WGLMTLLQYLPGLITTSVGANIIATTAAVMIMIVLVVRLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPLLAVAIAAGSISDQVGVTTRLGTLA---DSSFEFLVTMLLTVASARLFDWIGYQVKG 399
            W L+TL  YL GLIT S  A+ IAT A  ++++V +VRLAILFPAIAV+APGASL NV ADT+ R+WLILK+  IV LP+LA  +A G ISD   + +         DS  E L T+L    ++RL+ WIG+QVKG
Sbjct:  112 WALITLPPYLSGLITPSEDADSIATIATAIVVVVALVRLAILFPAIAVDAPGASLRNVLADTKARSWLILKSFFIVLLPVLAGLLAVGLISDLDDLPSWWSAARIAFDSPLELLATVLAAATASRLYGWIGHQVKG 247          
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: UPI001BAC138B (hypothetical protein n=4 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BAC138B)

HSP 1 Score: 120 bits (300), Expect = 2.200e-30
Identity = 72/136 (52.94%), Postives = 94/136 (69.12%), Query Frame = 1
Query:    1 WGLMTLLQYLPGLITTSVGANIIATTAAVMIMIVLVVRLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPLLAVAIAAGSISDQVGVTTRLGTLA---DSSFEFLVTMLLTVASARLFDWIGYQVKG 399
            W L+TL  YLPGLIT S  A+ IAT A  ++++V++VRLAILFPAIAV+APGASL +V ADT+ R+WLILK+  IV LP+LA  +A G ISD   + +         +S  E L T+L    ++RLF WIG+QVKG
Sbjct:  178 WALITLPPYLPGLITPSEDADSIATIATAIVVVVVLVRLAILFPAIAVDAPGASLRHVLADTKARSWLILKSFFIVLLPVLAGFLAVGLISDLDDLPSWWSAARIALNSPLELLATVLAAATASRLFGWIGHQVKG 313          
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: UPI001BACAC36 (hypothetical protein n=1 Tax=Bradyrhizobium sp. JYMT SZCCT0180 TaxID=2807666 RepID=UPI001BACAC36)

HSP 1 Score: 96.3 bits (238), Expect = 7.040e-23
Identity = 55/110 (50.00%), Postives = 77/110 (70.00%), Query Frame = 1
Query:   79 AAVMIMIVLVVRLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPLLAVAIAAGSISDQVGVTT---RLGTLADSSFEFLVTMLLTVASARLFDWIGYQVKG 399
            A  ++++V+++RLAILFPAIA++APGASL +V ADT+ R+WLILK+  IV LP+LA  +A G ISD   + +      T  DS  E L T+L    ++RL+ WIG+QVKG
Sbjct:   30 ATAIVVVVILMRLAILFPAIAIDAPGASLRHVVADTKARSWLILKSFFIVLLPVLAGLLAVGLISDLDDLPSWWPAARTTFDSPLELLATVLAAATASRLYGWIGHQVKG 139          
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: UPI001BA86508 (hypothetical protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BA86508)

HSP 1 Score: 95.9 bits (237), Expect = 1.330e-22
Identity = 55/106 (51.89%), Postives = 74/106 (69.81%), Query Frame = 1
Query:   91 IMIVLVVRLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPLLAVAIAAGSISDQVGVTTRLGTLA---DSSFEFLVTMLLTVASARLFDWIGYQVKG 399
            I++V++VRLAILFPAIAV+APGASL +V ADT+GR+WLILK+  IV LP+LA  +A G I D   + +         DS  E L T+L    ++RL+ WIG+Q+KG
Sbjct:   45 IVVVVLVRLAILFPAIAVDAPGASLRHVMADTKGRSWLILKSFFIVLLPVLAGLLAVGLIGDLDDLPSWWSAARIAFDSPLELLATVLAAATASRLYGWIGHQMKG 150          
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: UPI001C038243 (hypothetical protein n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001C038243)

HSP 1 Score: 86.7 bits (213), Expect = 4.630e-18
Identity = 57/142 (40.14%), Postives = 83/142 (58.45%), Query Frame = 1
Query:    1 WGLMTLLQYLPGLITTSVGANIIATTAAVMIMIVLVVRLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPLLAVAIAAGSI------SDQVGVTTRLGTLADSSFE---FLVTMLLTVASARLFDWIGYQVKG 399
            W L  +  YLP  +  S GA  +++ A ++I I ++VRL+IL PAIAV+APGAS+ NV ADTRG  W I+K  L +  P + + ++A  +      S+ +G + R+   A + F    FLV     + SARLF  IG +VKG
Sbjct:  108 WALANIPIYLPDAVIPSEGAAAVSSIALIVIGIAVMVRLSILLPAIAVDAPGASVANVLADTRGHAWFIVKAYLAIVAPFVLIVLSAALLAWLAGASEILGRSGRVNPAASAFFGALGFLVVTAFMIVSARLFMRIGDRVKG 249          
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: A0A431MZB3_9PSEU (Uncharacterized protein n=1 Tax=Pseudonocardiaceae bacterium TaxID=1873463 RepID=A0A431MZB3_9PSEU)

HSP 1 Score: 64.3 bits (155), Expect = 1.020e-9
Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 1
Query:   97 IVLVVRLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPLLAVAIAA---------GSISDQVGVTTRLGTLADSSFEFLVTMLLTVASARLFDWIGYQVK 396
            +V ++RL +LFPAIAV+A GAS+ N +AD+ G  W I+++ L+  LP + VAI             IS      T +G +   +   +      V +ARLF+WIG +VK
Sbjct:  144 VVAIIRLILLFPAIAVDASGASVANAFADSSGHFWFIVRSTLVAWLPFMIVAIVVIAWVWFAYVSGISYTGTGLTLIGVVLLGAIGTVTMTTSYVIAARLFEWIGSRVK 252          
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: A0A537TYV2_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537TYV2_9PROT)

HSP 1 Score: 58.2 bits (139), Expect = 4.250e-8
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 1
Query:  112 RLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPLLAVAIAAGSISDQVGVTTRLGTLADSSFEFLVTMLLTVASARLFDWIGYQVK 396
            RL+ILFPAIAV+A GAS  NV +DTRG  W I   AL+ SLP + V IA   +   VG  T +  + D     +   L  V ++RL+  +G  V 
Sbjct:   46 RLSILFPAIAVDAAGASWRNVMSDTRGYAWQIFLIALLASLPFVPVGIA---LWFSVGHGT-VAAVTDGVLGIISITLFVVIASRLYQRLGNNVN 136          
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: A0A2V6MB92_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V6MB92_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 2.030e-7
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 1
Query:  112 RLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPLLAVAIAAGSISDQVGVTTRLGTLADSSFEFLVTMLLTVASARLFDWIGYQVK 396
            RL+ILFPAIAV+A GAS  NV +DTRG  W I   AL+ SLP + V IA   +   VG  T +  + D     +   L  V ++RL+  +G  V 
Sbjct:  172 RLSILFPAIAVDAAGASWRNVMSDTRGYAWQIFLIALLASLPFVPVGIA---LWFSVGHGT-VAAVTDGVLGIISITLFVVIASRLYQRLGNNVN 262          
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Match: UPI001FFE3D53 (hypothetical protein n=1 Tax=Bradyrhizobium sp. 200 TaxID=2782665 RepID=UPI001FFE3D53)

HSP 1 Score: 52.8 bits (125), Expect = 1.510e-5
Identity = 36/106 (33.96%), Postives = 60/106 (56.60%), Query Frame = 1
Query:  103 LVVRLAILFPAIAVNAPGASLGNVWADTRGRTWLILKTALIVSLPL--LAVAIAA------GSISDQVGVTTRLGTLADSSFEFLVTMLLTVASARLFDWIGYQVK 396
            +V +L +LFPA+AV+APGA   N ++D+R R W +L   ++  +P+  LAVA+A       GS++  V      G L   +   + + L TV ++RL+  IG ++ 
Sbjct:  136 MVTQLLVLFPAVAVDAPGAGWQNAFSDSRSRIWFVLAVTILPFIPIGMLAVAVAPLLRFSPGSLTGLVA-----GMLWVGATLLIASTLGTVIASRLYQVIGDRLN 236          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53711.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI001BAC56B81.050e-3052.94hypothetical protein n=2 Tax=unclassified Bradyrhi... [more]
UPI001BAC138B2.200e-3052.94hypothetical protein n=4 Tax=Bradyrhizobium TaxID=... [more]
UPI001BACAC367.040e-2350.00hypothetical protein n=1 Tax=Bradyrhizobium sp. JY... [more]
UPI001BA865081.330e-2251.89hypothetical protein n=3 Tax=Bradyrhizobium TaxID=... [more]
UPI001C0382434.630e-1840.14hypothetical protein n=2 Tax=unclassified Bradyrhi... [more]
A0A431MZB3_9PSEU1.020e-936.70Uncharacterized protein n=1 Tax=Pseudonocardiaceae... [more]
A0A537TYV2_9PROT4.250e-842.11Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2V6MB92_9BACT2.030e-742.11Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
UPI001FFE3D531.510e-533.96hypothetical protein n=1 Tax=Bradyrhizobium sp. 20... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53711contigP-wetherbeei_contig53711:13..411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size399
Hectar predicted targeting categorysignal anchor
Exons1
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186803.3087404-UTR-P-wetherbeei_contig53711:12..211683186803.3087404-UTR-P-wetherbeei_contig53711:12..21Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53711 13..21 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186803.3190062-CDS-P-wetherbeei_contig53711:21..4111683186803.3190062-CDS-P-wetherbeei_contig53711:21..411Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53711 22..411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53711.1.1prot_P-wetherbeei_contig53711.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53711 22..411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53711.1.1

>prot_P-wetherbeei_contig53711.1.1 ID=prot_P-wetherbeei_contig53711.1.1|Name=mRNA_P-wetherbeei_contig53711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MTLLQYLPGLITTSVGANIIATTAAVMIMIVLVVRLAILFPAIAVNAPGA
SLGNVWADTRGRTWLILKTALIVSLPLLAVAIAAGSISDQVGVTTRLGTL
ADSSFEFLVTMLLTVASARLFDWIGYQVKG
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mRNA from alignment at P-wetherbeei_contig53711:13..411+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53711.1.1 ID=mRNA_P-wetherbeei_contig53711.1.1|Name=mRNA_P-wetherbeei_contig53711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig53711:13..411+ (Phaeothamnion wetherbeei SAG_119_79)
TGGGGACTCATGACTCTTCTGCAATACCTGCCGGGCCTGATCACGACATC CGTGGGTGCCAATATCATCGCAACCACCGCAGCCGTGATGATCATGATCG TCCTCGTAGTGCGGTTGGCTATTCTGTTTCCGGCGATCGCGGTCAACGCG CCGGGTGCCTCGCTCGGCAATGTTTGGGCGGATACCAGGGGCCGAACCTG GCTGATCCTGAAAACCGCTTTGATTGTGTCGCTGCCGCTGTTGGCTGTTG CGATAGCGGCCGGTTCGATCAGCGATCAGGTCGGCGTGACCACGCGGTTG GGTACCCTCGCAGACAGCTCGTTCGAGTTCCTGGTGACCATGCTGTTGAC CGTGGCCTCAGCCCGGCTGTTCGACTGGATCGGCTATCAGGTGAAGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53711:13..411+

>mRNA_P-wetherbeei_contig53711.1.1 ID=mRNA_P-wetherbeei_contig53711.1.1|Name=mRNA_P-wetherbeei_contig53711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig53711:13..411+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTCTTCTGCAATACCTGCCGGGCCTGATCACGACATCCGTGGGTGC
CAATATCATCGCAACCACCGCAGCCGTGATGATCATGATCGTCCTCGTAG
TGCGGTTGGCTATTCTGTTTCCGGCGATCGCGGTCAACGCGCCGGGTGCC
TCGCTCGGCAATGTTTGGGCGGATACCAGGGGCCGAACCTGGCTGATCCT
GAAAACCGCTTTGATTGTGTCGCTGCCGCTGTTGGCTGTTGCGATAGCGG
CCGGTTCGATCAGCGATCAGGTCGGCGTGACCACGCGGTTGGGTACCCTC
GCAGACAGCTCGTTCGAGTTCCTGGTGACCATGCTGTTGACCGTGGCCTC
AGCCCGGCTGTTCGACTGGATCGGCTATCAGGTGAAGGGC
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