mRNA_P-wetherbeei_contig5371.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5371.1.1
Unique NamemRNA_P-wetherbeei_contig5371.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5371.1.1 vs. uniprot
Match: A0A8J2S5K0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S5K0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.010e-7
Identity = 79/275 (28.73%), Postives = 112/275 (40.73%), Query Frame = 3 
Query: 1695 LVLATFPNSGTSFTLRATQEATEHAVYTCYEHEVMHTHEDNAQLQQLCGFDAGHEL--GMCQLTNAARGELRMR--ARLHGAMPPPMEGGP------------------PTPPPGKGA----------------LIKSHVADFGTGVFCGADGVERYRRALAQGANGHELERYGVLRLFRNPFDNMVARYHLLTNTEQLK---GV----NAHKAGFLADNG--HIPKRDIYTYLYWHLNANVVLRELGMPVALLTYEDIYEDPVAYLRAVVSMLG 2378
            ++L TFPNSGTS+T+RA +   +  + + Y HE         +  ++ G    H       +L +   G +R+R  A+L  AM     G P                  P    GKGA                L+K H   +G      A  + R  R   +  +   + R  VLRL RN FDN+VAR+HL     +     GV    N  + G   D+G  H   RD+  Y+ WH  A  + R    P   L YE +YED   Y + V+  LG
Sbjct:   56 VLLLTFPNSGTSYTIRAAECLADSQMCSSYIHE--------CEKSRIVGERPHHPFLDRNPELISFQGGRMRIRDPAKLEKAMALYFNGRPAEQLVEFQASLANLTAAAPVRECGKGAWVLRDDNQTMSDAASPLVKWHGVSYGGDGDLPASALIREFRYRFERDDDWPVVR--VLRLTRNVFDNLVARHHLECKARRPTCPTGVATRENFVRGGPPVDDGGPHF-LRDVCKYMKWHHRAAAMRRNSTKPWTTLAYETLYEDSPKYFQTVLETLG 319
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5371.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8J2S5K0_9STRA1.010e-728.73Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5371contigP-wetherbeei_contig5371:918..3775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2395
Hectar predicted targeting categorysignal peptide
Exons3
Cds size2208
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186803.2516136-UTR-P-wetherbeei_contig5371:917..11021683186803.2516136-UTR-P-wetherbeei_contig5371:917..1102Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5371 918..1102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186803.267331-CDS-P-wetherbeei_contig5371:1102..27101683186803.267331-CDS-P-wetherbeei_contig5371:1102..2710Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5371 1103..2710 +
1683186803.2757463-CDS-P-wetherbeei_contig5371:2943..32961683186803.2757463-CDS-P-wetherbeei_contig5371:2943..3296Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5371 2944..3296 +
1683186803.2838128-CDS-P-wetherbeei_contig5371:3528..37751683186803.2838128-CDS-P-wetherbeei_contig5371:3528..3775Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5371 3529..3775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5371.1.1prot_P-wetherbeei_contig5371.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5371 1103..3775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5371.1.1

>prot_P-wetherbeei_contig5371.1.1 ID=prot_P-wetherbeei_contig5371.1.1|Name=mRNA_P-wetherbeei_contig5371.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=736bp
MVSPHCWRRLHALAVLVLLREARSRRLGDTTPGGIPRRIVLWNAASATSC
GGVQETRQAFLSSNVGFEVEAQWGAAETAAVPSGLAQVGRNNLVRDGLAM
LRQLYASGGIYVSDASWPGEPMSAVLTADDEFVMGVAADAKTGERHLLFL
AAAAQSPVMAAMVAASEAALRAPAETYQRMWADPLAEVVPADQMEERHFT
GIAMMDSVLESQFAGAAGARVLVHDLKLVALPTVAAAAAGVGDSLCSSAA
AAAAAAASAGATRIITPVFLNLMSERVPPGSPRGRASVSAVGVGAALAPG
QYVAPARSSEAVAAAALQPMWAAEAAEAVPACAAAAHGCFLWLARDGQLA
LYAGMGLLDPAVQLVKVLSAAPTAGAGGSGRWLALNTNGDIVLFSSADGA
AVAVWRAGSAFSAGCYSGECRSDVFLSVHDDGRLELRRRMSPAMTAYITV
GAAANKRLSTCLWHNDFASEAVAIGGATVPPRAQPSNGADGSVASSGCQV
PPALVLATFPNSGTSFTLRATQEATEHAVYTCYEHEVMHTHEDNAQLQQL
CGFDAGHELGMCQLTNAARGELRMRARLHGAMPPPMEGGPPTPPPGKGAL
IKSHVADFGTGVFCGADGVERYRRALAQGANGHELERYGVLRLFRNPFDN
MVARYHLLTNTEQLKGVNAHKAGFLADNGHIPKRDIYTYLYWHLNANVVL
RELGMPVALLTYEDIYEDPVAYLRAVVSMLGWTEEE
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mRNA from alignment at P-wetherbeei_contig5371:918..3775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5371.1.1 ID=mRNA_P-wetherbeei_contig5371.1.1|Name=mRNA_P-wetherbeei_contig5371.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2858bp|location=Sequence derived from alignment at P-wetherbeei_contig5371:918..3775+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGGACATAGGGTCCGCATTTACACGAACGGAGGGCAGCGACAACAGTC
TCCCTAAAGGTTTAGTAGCAAAGGGTCGGGATCAATCGATTGCTTTCGAA
CACGAAAGAGGATTCGAGCACTTTGAAATTGAAATAGGAGGCCAAAGTGC
ACGCAAAGATCCGCGGCAGGGCATCCTTTGGTGCGATGGTGTCTCCTCAC
TGCTGGAGAAGGCTACATGCCTTGGCGGTCCTTGTCCTTTTGCGCGAGGC
GCGCTCTCGACGCCTCGGTGACACGACGCCGGGAGGAATTCCACGACGAA
TCGTACTATGGAACGCCGCCTCCGCGACGAGCTGCGGCGGCGTGCAAGAA
ACTCGGCAGGCCTTTCTTTCGTCTAATGTGGGCTTTGAGGTGGAGGCGCA
ATGGGGCGCCGCCGAGACGGCAGCTGTCCCGTCCGGCTTAGCGCAAGTAG
GCCGCAACAACCTCGTCCGCGATGGCCTGGCCATGCTTCGGCAGCTGTAT
GCGTCGGGCGGCATCTACGTTTCCGACGCGTCGTGGCCGGGCGAGCCAAT
GTCGGCGGTGCTGACGGCCGATGACGAGTTCGTCATGGGCGTCGCTGCGG
ACGCCAAGACGGGCGAACGGCATCTCCTCTTTTTAGCGGCGGCCGCCCAG
AGCCCCGTCATGGCCGCCATGGTGGCCGCGTCGGAGGCGGCGCTCCGGGC
GCCCGCCGAGACGTACCAGCGAATGTGGGCCGACCCGCTCGCCGAAGTCG
TTCCCGCCGACCAGATGGAGGAGCGGCACTTCACCGGCATCGCCATGATG
GACTCGGTGCTGGAGAGCCAATTCGCGGGCGCCGCCGGCGCGCGCGTGCT
CGTGCACGACCTGAAGCTCGTCGCGCTGCCAACAGTGGCGGCTGCAGCGG
CTGGCGTCGGCGACTCGTTGTGCAGTTCGGCGGCGGCAGCAGCGGCGGCG
GCGGCGTCGGCCGGCGCCACCAGGATCATCACGCCCGTCTTCCTGAACCT
TATGAGCGAGCGCGTGCCGCCGGGGAGCCCACGGGGTCGGGCGTCGGTGT
CGGCTGTCGGCGTCGGCGCCGCCTTGGCGCCGGGGCAGTATGTCGCGCCG
GCGAGGAGTAGCGAGGCGGTGGCGGCGGCGGCGCTCCAGCCCATGTGGGC
CGCCGAAGCCGCCGAGGCGGTGCCGGCGTGCGCAGCAGCGGCGCACGGCT
GCTTTTTGTGGCTGGCACGGGACGGCCAGCTGGCGTTGTACGCCGGCATG
GGGCTGCTGGACCCCGCCGTGCAGCTGGTCAAGGTGCTCTCGGCGGCGCC
CACCGCCGGTGCAGGCGGCAGTGGCAGGTGGCTGGCGCTGAACACGAATG
GTGACATCGTGCTCTTTTCTTCCGCTGACGGCGCAGCGGTGGCGGTTTGG
CGCGCGGGGTCGGCGTTCTCGGCGGGCTGCTATTCGGGCGAATGCCGCTC
TGACGTCTTTTTGTCTGTGCACGACGACGGCCGGCTGGAGCTGCGCCGCC
GCATGAGCCCGGCCATGACGGCCTACATAACCGTCGGAGCGGCCGCCAAC
AAGCGGCTCAGCACATGCCTCTGGCACAACGACTTCGCGTCGGAGGCGGT
GGCGATCGGCGGCGCGACGGTGCCGCCGCGGGCGCAGCCGAGCAACGGCG
CCGACGGCAGTGTCGCGTCATCAGGTTGCCAGGTGCCGCCGGCGCTGGTG
CTGGCAACGTTCCCCAACTCGGGCACATCGTTCACGCTGCGGGCGACGCA
GGAGGCGACGGAGCACGCCGTCTACACGTGCTACGAGCACGAGGTCAGTC
AGTCAGCCAGGCTTCTGTTACTGCATTGGTGGGGGTTTTTAAAGAGCACG
ACGGCGTTTCTTTTTATGCGCTTGTGTCGATAACGGACATTGCCGGCACC
ACTGGCCACCTACCTCTCTTCTTGATGAGAGAGCTGCCTCGGAAGACATC
CCAAGGTGCTAATTCTTCTTTTTCCCTTCCATCTCTTCTCTTTCTTTTCC
TTTCTTCCTTCCCCCTTTGTTCACAGGTGATGCACACGCACGAGGACAAC
GCCCAGCTGCAGCAGCTCTGCGGCTTCGACGCCGGCCACGAGCTCGGCAT
GTGCCAGCTGACCAACGCCGCCCGCGGCGAGCTCCGGATGCGCGCGCGCC
TCCACGGTGCCATGCCGCCGCCGATGGAGGGCGGGCCGCCGACGCCGCCG
CCGGGCAAGGGCGCGCTCATCAAGTCGCACGTGGCGGACTTTGGGACGGG
CGTCTTCTGCGGCGCCGACGGCGTGGAGCGGTACCGGCGGGCGCTGGCGC
AGGGCGCCAACGGCCACGAATTGGAGCGGTACGGCGTGCTGCGGCTCTTC
CGGAACCCCTTCGACAACATGGTGGCGCGGTAAGTACATGCGGTTCGAAA
GTTGACACCGCAATTCGGCCTGGCCCGCTTTTTCTGTCTTTCATTCGTTC
CGCAGAAGGGCTTTTTCATTTAACCACTGTTCTTTTCTTCGACGTCGTCG
CTCTGAGAAGCACTCTTTCCTCTAACCGCTGCGCCCTTTCTTCTTCCTTG
GTCCTACTGTTTCTGCTCTTCGTCTTGATTCCTCCTTGTCCCTTCTGAAA
AATATCTTCAGGTATCACCTACTGACCAACACAGAGCAGCTCAAGGGCGT
CAACGCGCACAAGGCGGGCTTCCTCGCCGACAACGGCCACATTCCGAAGC
GCGACATCTACACGTACCTCTACTGGCACCTCAATGCCAACGTCGTGTTG
CGGGAGCTGGGCATGCCAGTGGCGCTGCTGACGTACGAGGACATTTACGA
GGATCCCGTGGCGTACCTGCGGGCGGTCGTCTCCATGCTCGGCTGGACCG
AGGAGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5371:918..3775+

>mRNA_P-wetherbeei_contig5371.1.1 ID=mRNA_P-wetherbeei_contig5371.1.1|Name=mRNA_P-wetherbeei_contig5371.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2208bp|location=Sequence derived from alignment at P-wetherbeei_contig5371:918..3775+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGTCTCCTCACTGCTGGAGAAGGCTACATGCCTTGGCGGTCCTTGT
CCTTTTGCGCGAGGCGCGCTCTCGACGCCTCGGTGACACGACGCCGGGAG
GAATTCCACGACGAATCGTACTATGGAACGCCGCCTCCGCGACGAGCTGC
GGCGGCGTGCAAGAAACTCGGCAGGCCTTTCTTTCGTCTAATGTGGGCTT
TGAGGTGGAGGCGCAATGGGGCGCCGCCGAGACGGCAGCTGTCCCGTCCG
GCTTAGCGCAAGTAGGCCGCAACAACCTCGTCCGCGATGGCCTGGCCATG
CTTCGGCAGCTGTATGCGTCGGGCGGCATCTACGTTTCCGACGCGTCGTG
GCCGGGCGAGCCAATGTCGGCGGTGCTGACGGCCGATGACGAGTTCGTCA
TGGGCGTCGCTGCGGACGCCAAGACGGGCGAACGGCATCTCCTCTTTTTA
GCGGCGGCCGCCCAGAGCCCCGTCATGGCCGCCATGGTGGCCGCGTCGGA
GGCGGCGCTCCGGGCGCCCGCCGAGACGTACCAGCGAATGTGGGCCGACC
CGCTCGCCGAAGTCGTTCCCGCCGACCAGATGGAGGAGCGGCACTTCACC
GGCATCGCCATGATGGACTCGGTGCTGGAGAGCCAATTCGCGGGCGCCGC
CGGCGCGCGCGTGCTCGTGCACGACCTGAAGCTCGTCGCGCTGCCAACAG
TGGCGGCTGCAGCGGCTGGCGTCGGCGACTCGTTGTGCAGTTCGGCGGCG
GCAGCAGCGGCGGCGGCGGCGTCGGCCGGCGCCACCAGGATCATCACGCC
CGTCTTCCTGAACCTTATGAGCGAGCGCGTGCCGCCGGGGAGCCCACGGG
GTCGGGCGTCGGTGTCGGCTGTCGGCGTCGGCGCCGCCTTGGCGCCGGGG
CAGTATGTCGCGCCGGCGAGGAGTAGCGAGGCGGTGGCGGCGGCGGCGCT
CCAGCCCATGTGGGCCGCCGAAGCCGCCGAGGCGGTGCCGGCGTGCGCAG
CAGCGGCGCACGGCTGCTTTTTGTGGCTGGCACGGGACGGCCAGCTGGCG
TTGTACGCCGGCATGGGGCTGCTGGACCCCGCCGTGCAGCTGGTCAAGGT
GCTCTCGGCGGCGCCCACCGCCGGTGCAGGCGGCAGTGGCAGGTGGCTGG
CGCTGAACACGAATGGTGACATCGTGCTCTTTTCTTCCGCTGACGGCGCA
GCGGTGGCGGTTTGGCGCGCGGGGTCGGCGTTCTCGGCGGGCTGCTATTC
GGGCGAATGCCGCTCTGACGTCTTTTTGTCTGTGCACGACGACGGCCGGC
TGGAGCTGCGCCGCCGCATGAGCCCGGCCATGACGGCCTACATAACCGTC
GGAGCGGCCGCCAACAAGCGGCTCAGCACATGCCTCTGGCACAACGACTT
CGCGTCGGAGGCGGTGGCGATCGGCGGCGCGACGGTGCCGCCGCGGGCGC
AGCCGAGCAACGGCGCCGACGGCAGTGTCGCGTCATCAGGTTGCCAGGTG
CCGCCGGCGCTGGTGCTGGCAACGTTCCCCAACTCGGGCACATCGTTCAC
GCTGCGGGCGACGCAGGAGGCGACGGAGCACGCCGTCTACACGTGCTACG
AGCACGAGGTGATGCACACGCACGAGGACAACGCCCAGCTGCAGCAGCTC
TGCGGCTTCGACGCCGGCCACGAGCTCGGCATGTGCCAGCTGACCAACGC
CGCCCGCGGCGAGCTCCGGATGCGCGCGCGCCTCCACGGTGCCATGCCGC
CGCCGATGGAGGGCGGGCCGCCGACGCCGCCGCCGGGCAAGGGCGCGCTC
ATCAAGTCGCACGTGGCGGACTTTGGGACGGGCGTCTTCTGCGGCGCCGA
CGGCGTGGAGCGGTACCGGCGGGCGCTGGCGCAGGGCGCCAACGGCCACG
AATTGGAGCGGTACGGCGTGCTGCGGCTCTTCCGGAACCCCTTCGACAAC
ATGGTGGCGCGGTATCACCTACTGACCAACACAGAGCAGCTCAAGGGCGT
CAACGCGCACAAGGCGGGCTTCCTCGCCGACAACGGCCACATTCCGAAGC
GCGACATCTACACGTACCTCTACTGGCACCTCAATGCCAACGTCGTGTTG
CGGGAGCTGGGCATGCCAGTGGCGCTGCTGACGTACGAGGACATTTACGA
GGATCCCGTGGCGTACCTGCGGGCGGTCGTCTCCATGCTCGGCTGGACCG
AGGAGGAG
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