mRNA_P-wetherbeei_contig53691.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53691.1.1
Unique NamemRNA_P-wetherbeei_contig53691.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53691.1.1 vs. uniprot
Match: A0A7S3NKZ6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKZ6_9STRA)

HSP 1 Score: 119 bits (297), Expect = 3.630e-29
Identity = 68/129 (52.71%), Postives = 85/129 (65.89%), Query Frame = 1 
Query:   25 YGLGAVGWTMLISCLGVQWSLLTLPFFSNLYAYGLDLGSWTKAT-LSMSQLLQANFAVAAFLISFGALIGKISPLQIALLVLIESVCYAANDELLLSGYLNISDCGGTIPIHCFCAYFGLAVSYALGVP 408
            YGLGA G T+LI+C G++ +LL  P F N          W K   + +  L+ ANFAVAA LISFGALIGKI+PLQ+ LL+ IE+  Y  N  ++LS +LNI D GGTI IH F AYFGLA +Y +G P
Sbjct:   84 YGLGAAGLTLLITCYGMELALLFEPLFQNW---------WEKQIQIDLIALMNANFAVAALLISFGALIGKINPLQLWLLITIETAVYCFNKRVILSKWLNIMDYGGTIIIHEFGAYFGLACAYMIGKP 203
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BLAST of mRNA_P-wetherbeei_contig53691.1.1 vs. uniprot
Match: A0A7S2AYZ4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AYZ4_9STRA)

HSP 1 Score: 116 bits (290), Expect = 7.170e-28
Identity = 62/127 (48.82%), Postives = 83/127 (65.35%), Query Frame = 1 
Query:   25 YGLGAVGWTMLISCLGVQWSLLTLPFFSNLYAYGLDLGSWTK-ATLSMSQLLQANFAVAAFLISFGALIGKISPLQIALLVLIESVCYAANDELLLSGYLNISDCGGTIPIHCFCAYFGLAVSYALG 402
            YGLGAVG TM I+ LG++ S++  P FS         G WT+   + +   L A+FAVAAFLISFG LIGK++P Q+ +L ++ES  Y  N  ++L  ++ + D GGTI IH F AYFGLAV+Y LG
Sbjct:  152 YGLGAVGLTMFITALGIEVSIMFEPLFSR--------GGWTEYVNVDIEAFLNADFAVAAFLISFGGLIGKVNPTQLTILTIVESFFYCFNKRIILERWIPLVDVGGTIVIHMFGAYFGLAVAYVLG 270
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BLAST of mRNA_P-wetherbeei_contig53691.1.1 vs. uniprot
Match: A0A7S3MFL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFL4_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.300e-25
Identity = 56/129 (43.41%), Postives = 84/129 (65.12%), Query Frame = 1 
Query:   22 RYGLGAVGWTMLISCLGVQWSLLTLPFFSNLYAYGLDLGSWTKATLSMSQLLQANFAVAAFLISFGALIGKISPLQIALLVLIESVCYAANDELLLSGYLNISDCGGTIPIHCFCAYFGLAVSYALGVP 408
            +Y   A+G+T+ ++ +G+QW +LT  FF+ +Y       S+    +++  +L A   V A LISFGA++G++SPLQ+ ++V +E V YA N   LL G+L+  D GG+I IH F AYFGLAV+Y LG P
Sbjct:  125 KYSTSALGFTLFVTAIGLQWGILTEGFFAQVYTK-----SYGYIPVNLMTVLAALDQVTALLISFGAVVGRVSPLQLLVMVALECVFYAINKCTLLVGWLDFIDAGGSIQIHMFGAYFGLAVAYMLGPP 248
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BLAST of mRNA_P-wetherbeei_contig53691.1.1 vs. uniprot
Match: A0A4D9CPZ7_9STRA (Ammonium_transp domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CPZ7_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.180e-25
Identity = 61/129 (47.29%), Postives = 81/129 (62.79%), Query Frame = 1 
Query:   22 RYGLGAVGWTMLISCLGVQWSLLTLPFFSNLYAYGLDLGSWTKATLSMSQLLQANFAVAAFLISFGALIGKISPLQIALLVLIESVCYAANDELLLSGYLNISDCGGTIPIHCFCAYFGLAVSYALGVP 408
            R+G  A G+T L++CLG+QW ++   F+  L    L  G     TL M+ L Q +F VAA LISFGALIGKISP Q+ +L  +E + YAA+ E  +S  L   D GG++ IH F AYFGLA SY + +P
Sbjct:   78 RHGYSASGYTFLVTCLGLQWCVIMYAFWHGL----LGEGKLRGPTLDMTMLFQGDFGVAAVLISFGALIGKISPTQLMVLCFLEIIVYAAS-EAFVSEVLRAEDVGGSMVIHTFGAYFGLASSYVVTLP 201
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BLAST of mRNA_P-wetherbeei_contig53691.1.1 vs. uniprot
Match: A0A7S2I278_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2I278_9DINO)

HSP 1 Score: 108 bits (270), Expect = 2.820e-25
Identity = 62/126 (49.21%), Postives = 76/126 (60.32%), Query Frame = 1 
Query:   25 YGLGAVGWTMLISCLGVQWSLLTLPFFSNLYAYGLDLGSWTKATLSMSQLLQANFAVAAFLISFGALIGKISPLQIALLVLIESVCYAANDELLLSGYLNISDCGGTIPIHCFCAYFGLAVSYALG 402
            YG+GAVG+TMLI+CLG QW L+              +G +  A LS+  L+ ANFA A  LISFG LIGK+SP QI  L ++E   Y AN    L  YL++ D GGTI IH F AYFG+A    LG
Sbjct:  100 YGVGAVGFTMLIACLGTQWGLVLEK----------TMGGFGMA-LSLKDLINANFATATVLISFGGLIGKVSPTQIVCLTILEMTFYCANKVFFLIDYLHVVDTGGTIIIHVFGAYFGIAACATLG 214
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BLAST of mRNA_P-wetherbeei_contig53691.1.1 vs. uniprot
Match: A0A7S3HDJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HDJ5_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.030e-24
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 1 
Query:   22 RYGLGAVGWTMLISCLGVQWSLLTLPFFSNLYAYGLDLGSWTKATLSMSQLLQANFAVAAFLISFGALIGKISPLQIALLVLIESVCYAANDELLLSGYLNISDCGGTIPIHCFCAYFGLAVSYALGVP 408
            RYG+GAVG TMLI+ + +QW +    FFS  Y        W    +++  L      VA+ LISFGA+IGK++PLQ+ ++ L+E++ YA N  + L G L+  D GGT+ IH F +YFGLAVS  LG P
Sbjct:   42 RYGMGAVGLTMLITVVALQWGVWIEWFFSMWYET-----DWIYIPMNIKTLDTGLTLVASILISFGAIIGKVNPLQLVIMALMEALFYAFNKAIFLEGALSFMDPGGTVAIHMFGSYFGLAVSMMLGKP 165
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BLAST of mRNA_P-wetherbeei_contig53691.1.1 vs. uniprot
Match: A0A482RYP7_9ARCH (Ammonium_transp domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RYP7_9ARCH)

HSP 1 Score: 106 bits (264), Expect = 1.360e-24
Identity = 56/127 (44.09%), Postives = 82/127 (64.57%), Query Frame = 1 
Query:   25 YGLGAVGWTMLISCLGVQWSLLTLPFFSNLYAYGLDLGS--WTKATLSMSQLLQANFAVAAFLISFGALIGKISPLQIALLVLIESVCYAANDELLLSGYLNISDCGGTIPIHCFCAYFGLAVSYAL 399
            YGLGAVG+TMLI+ +G+QW L T  FF  +Y   +D  +  W    + +  L+ A F V+A LISFGA+IGK  P Q+ ++ ++E + +A N E++L+G + ++D GGT   H F AYFGL V+  L
Sbjct:   24 YGLGAVGFTMLITAIGLQWYLFTESFFHQIYNNYIDGQNLDWHAVPIDIYSLMNALFGVSAVLISFGAIIGKAKPTQLIVMAILELIFHAFNYEVILTGGVKVTDIGGTYADHMFGAYFGLTVAICL 150
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BLAST of mRNA_P-wetherbeei_contig53691.1.1 vs. uniprot
Match: A0A7S4B1R4_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B1R4_CHRCT)

HSP 1 Score: 100 bits (250), Expect = 1.420e-24
Identity = 51/91 (56.04%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:  139 SWT-KATLSMSQLLQANFAVAAFLISFGALIGKISPLQIALLVLIESVCYAANDELLLSGYLNISDCGGTIPIHCFCAYFGLAVSYALGVP 408
            SW+ +  + +  LL A  AVAAFLISFGAL+GK+SP Q+ +L++ ES+CY A+ +L+L  +L+I DCGGTI IH F AYFGLA +Y LG P
Sbjct:   10 SWSERIEMDVMALLNAELAVAAFLISFGALLGKLSPKQLVVLIIWESLCYCAHKKLILERWLDIKDCGGTIIIHMFGAYFGLACAYVLGPP 100
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BLAST of mRNA_P-wetherbeei_contig53691.1.1 vs. uniprot
Match: A0A7S3HCU6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCU6_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.890e-24
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 1 
Query:   22 RYGLGAVGWTMLISCLGVQWSLLTLPFFSNLYAYGLDLGSWTKATLSMSQLLQANFAVAAFLISFGALIGKISPLQIALLVLIESVCYAANDELLLSGYLNISDCGGTIPIHCFCAYFGLAVSYALGVP 408
            RYG+GAVG TMLI+ + +QW +    FFS  Y        W    +++  L      VA+ LISFGA+IGK++PLQ+ ++ L+E++ YA N  + L G L+  D GGT+ IH F +YFGLAVS  LG P
Sbjct:   42 RYGMGAVGLTMLITVVALQWGVWIEWFFSMWYET-----DWIYIPMNIKTLDTGLTLVASILISFGAIIGKVNPLQLVIMALMEALFYAFNKAIFLEGALSFMDPGGTVAIHMFGSYFGLAVSMMLGKP 165
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BLAST of mRNA_P-wetherbeei_contig53691.1.1 vs. uniprot
Match: A0A0G4H0T5_VITBC (Ammonium_transp domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H0T5_VITBC)

HSP 1 Score: 105 bits (261), Expect = 8.150e-24
Identity = 60/134 (44.78%), Postives = 80/134 (59.70%), Query Frame = 1 
Query:    1 FCLPSAGRYGLGAVGWTMLISCLGVQWSLLTLPFFSNLYAYGLDLGSW-TKATLSMSQLLQANFAVAAFLISFGALIGKISPLQIALLVLIESVCYAANDELLLSGYLNISDCGGTIPIHCFCAYFGLAVSYAL 399
            F +    RYG  AVG+  +I+ L ++W++L + +   L     D  S+ TK  +S+ QL+Q +FA AA LISFGAL+GK  PLQ+  L L E V YA N  LL    L +SD GG++ IH F  YFGLA S  L
Sbjct:   98 FLMAFLRRYGFSAVGFNYMIAALAIEWAMLVVGYSKQLIPSASDEASFPTKVVISVQQLVQGDFAAAAVLISFGALLGKTGPLQLMFLTLFECVAYAVNLRLL--DLLGVSDVGGSLGIHAFGCYFGLAASAIL 229
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53691.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3NKZ6_9STRA3.630e-2952.71Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2AYZ4_9STRA7.170e-2848.82Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3MFL4_9STRA1.300e-2543.41Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9CPZ7_9STRA2.180e-2547.29Ammonium_transp domain-containing protein n=1 Tax=... [more]
A0A7S2I278_9DINO2.820e-2549.21Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A7S3HDJ5_9STRA1.030e-2444.96Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482RYP7_9ARCH1.360e-2444.09Ammonium_transp domain-containing protein (Fragmen... [more]
A0A7S4B1R4_CHRCT1.420e-2456.04Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A7S3HCU6_9STRA6.890e-2444.96Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0G4H0T5_VITBC8.150e-2444.78Ammonium_transp domain-containing protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53691contigP-wetherbeei_contig53691:25..432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog529818.AMSG_12289T0
Preferred nameRHCG
PFAMsAmmonium_transp
Model size408
Max annot lvl2759|Eukaryota
KEGG koko:K06579,ko:K06580,ko:K14427,ko:K15502
KEGG TC1.A.11.4,1.A.11.4.3,2.A.30.5
Hectar predicted targeting categorysignal peptide
GOsGO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006855,GO:0006873,GO:0006885,GO:0007275,GO:0008092,GO:0008150,GO:0008324,GO:0008519,GO:0009888,GO:0009925,GO:0009987,GO:0012506,GO:0014731,GO:0015075,GO:0015238,GO:0015267,GO:0015669,GO:0015670,GO:0015672,GO:0015695,GO:0015696,GO:0015701,GO:0015711,GO:0015837,GO:0015893,GO:0016020,GO:0016021,GO:0016323,GO:0016324,GO:0019725,GO:0019755,GO:0022803,GO:0022840,GO:0022842,GO:0022857,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030506,GO:0030659,GO:0030855,GO:0031090,GO:0031224,GO:0031225,GO:0031226,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0034101,GO:0034220,GO:0035378,GO:0035379,GO:0042221,GO:0042493,GO:0042592,GO:0042802,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0045178,GO:0046658,GO:0048468,GO:0048513,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0055065,GO:0055067,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060429,GO:0060586,GO:0061515,GO:0065007,GO:0065008,GO:0070633,GO:0070634,GO:0071702,GO:0071705,GO:0071944,GO:0072488,GO:0097272,GO:0097708,GO:0098590,GO:0098655,GO:0098771
Exons1
Evalue9.26e-23
EggNOG OGsKOG0498@1|root,KOG3796@1|root,KOG0498@2759|Eukaryota,KOG3796@2759|Eukaryota
Descriptionammonium transmembrane transporter activity
Cds size408
COG categoryU
BRITEko00000,ko01009,ko02000,ko03400,ko04090
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186803.0187354-CDS-P-wetherbeei_contig53691:24..4321683186803.0187354-CDS-P-wetherbeei_contig53691:24..432Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53691 25..432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53691.1.1prot_P-wetherbeei_contig53691.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53691 25..432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53691.1.1

>prot_P-wetherbeei_contig53691.1.1 ID=prot_P-wetherbeei_contig53691.1.1|Name=mRNA_P-wetherbeei_contig53691.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
FCLPSAGRYGLGAVGWTMLISCLGVQWSLLTLPFFSNLYAYGLDLGSWTK
ATLSMSQLLQANFAVAAFLISFGALIGKISPLQIALLVLIESVCYAANDE
LLLSGYLNISDCGGTIPIHCFCAYFGLAVSYALGVP
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mRNA from alignment at P-wetherbeei_contig53691:25..432-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53691.1.1 ID=mRNA_P-wetherbeei_contig53691.1.1|Name=mRNA_P-wetherbeei_contig53691.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig53691:25..432- (Phaeothamnion wetherbeei SAG_119_79)
TTCTGCTTGCCGTCTGCCGGCAGGTACGGGCTGGGCGCCGTCGGCTGGAC
CATGCTCATCAGCTGCCTCGGCGTGCAATGGTCGCTCCTGACGCTGCCCT
TCTTCTCCAACCTCTACGCATACGGCCTCGACCTCGGCTCCTGGACCAAG
GCCACTTTGAGCATGTCCCAGCTGCTGCAGGCGAACTTCGCCGTCGCCGC
CTTCCTCATCTCCTTCGGGGCACTCATCGGCAAGATCTCGCCGCTGCAGA
TCGCGTTGCTTGTGCTGATCGAGTCCGTCTGCTACGCGGCCAATGACGAA
CTGCTGCTGTCAGGCTACCTGAACATTTCGGACTGCGGAGGAACAATTCC
GATTCACTGCTTCTGCGCCTACTTCGGGCTGGCCGTGTCGTACGCGCTCG
GCGTGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53691:25..432-

>mRNA_P-wetherbeei_contig53691.1.1 ID=mRNA_P-wetherbeei_contig53691.1.1|Name=mRNA_P-wetherbeei_contig53691.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig53691:25..432- (Phaeothamnion wetherbeei SAG_119_79)
TTCTGCTTGCCGTCTGCCGGCAGGTACGGGCTGGGCGCCGTCGGCTGGAC
CATGCTCATCAGCTGCCTCGGCGTGCAATGGTCGCTCCTGACGCTGCCCT
TCTTCTCCAACCTCTACGCATACGGCCTCGACCTCGGCTCCTGGACCAAG
GCCACTTTGAGCATGTCCCAGCTGCTGCAGGCGAACTTCGCCGTCGCCGC
CTTCCTCATCTCCTTCGGGGCACTCATCGGCAAGATCTCGCCGCTGCAGA
TCGCGTTGCTTGTGCTGATCGAGTCCGTCTGCTACGCGGCCAATGACGAA
CTGCTGCTGTCAGGCTACCTGAACATTTCGGACTGCGGAGGAACAATTCC
GATTCACTGCTTCTGCGCCTACTTCGGGCTGGCCGTGTCGTACGCGCTCG
GCGTGCCG
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