mRNA_P-wetherbeei_contig53681.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53681.1.1
Unique NamemRNA_P-wetherbeei_contig53681.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53681.1.1 vs. uniprot
Match: A0A1H8RMT4_9PROT (Cytochrome c556 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8RMT4_9PROT)

HSP 1 Score: 204 bits (518), Expect = 2.840e-65
Identity = 106/132 (80.30%), Postives = 116/132 (87.88%), Query Frame = 1
Query:    1 GGATLAFAQADVIKQRQDNRKAAGAAMRAIKGIIDAKGDTKGAVEQAAKLKELELAFVKMFPAGSDKGETKALPVVWTDWAGFEAANKASLAAYDKLAVAAGSGDRAALTVAFGDTGKTCGACHDKYRAKAN 396
            GGAT+A AQADVIK+RQ+NRK   AAMRAIKGI+DAKG T GAVEQAAKLK LE AFVKMFPAGSDKGETKALP VW+D AGF+AA+KA  AAYDKLAVAAGSGD+AAL  AF DTGK CGACH+K+RAKAN
Sbjct:   20 GGATIALAQADVIKERQENRKQTAAAMRAIKGIVDAKGPTAGAVEQAAKLKTLEAAFVKMFPAGSDKGETKALPTVWSDMAGFQAASKAVDAAYDKLAVAAGSGDQAALATAFADTGKACGACHEKFRAKAN 151          
BLAST of mRNA_P-wetherbeei_contig53681.1.1 vs. uniprot
Match: A0A521M2W7_9HYPH (Cytochrome c n=2 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521M2W7_9HYPH)

HSP 1 Score: 204 bits (518), Expect = 3.240e-65
Identity = 105/130 (80.77%), Postives = 116/130 (89.23%), Query Frame = 1
Query:    1 GGATLAFAQADVIKQRQDNRKAAGAAMRAIKGIIDAKGDTKGAVEQAAKLKELELAFVKMFPAGSDKGETKALPVVWTDWAGFEAANKASLAAYDKLAVAAGSGDRAALTVAFGDTGKTCGACHDKYRAK 390
            GGAT+A AQ D IK+RQ+NRK AGAAMRAIKGIIDAKG T GAVEQAAKLK LE +FVK+FPAGSDKGETKALP +WTD AGF+AA+KA+ AAYDKLAVAAGSGD AALT AFG+TGK CGACHDK+RAK
Sbjct:   23 GGATIAMAQGDPIKERQENRKQAGAAMRAIKGIIDAKGATTGAVEQAAKLKTLEASFVKLFPAGSDKGETKALPAIWTDMAGFQAASKAANAAYDKLAVAAGSGDMAALTAAFGETGKACGACHDKFRAK 152          
BLAST of mRNA_P-wetherbeei_contig53681.1.1 vs. uniprot
Match: A0A521KWB3_9HYPH (Cytochrome c n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521KWB3_9HYPH)

HSP 1 Score: 201 bits (512), Expect = 2.330e-64
Identity = 105/132 (79.55%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    1 GGATLAFAQADVIKQRQDNRKAAGAAMRAIKGIIDAKGDTKGAVEQAAKLKELELAFVKMFPAGSDKGETKALPVVWTDWAGFEAANKASLAAYDKLAVAAGSGDRAALTVAFGDTGKTCGACHDKYRAKAN 396
            GGAT+A AQADVIK RQDNRK AGAAMRAIK ++DAKG T  AV +AAKLK LE AFVKMFPAGS  GETKALPV+WTDWAGFEAA+KAS  AYDKLAVAAGSG+  AL  AF DTGKTCGACHDK+RAKAN
Sbjct:   20 GGATVALAQADVIKARQDNRKQAGAAMRAIKAVVDAKGPTAPAVAEAAKLKTLEAAFVKMFPAGSGTGETKALPVIWTDWAGFEAASKASDVAYDKLAVAAGSGNAEALAAAFADTGKTCGACHDKFRAKAN 151          
BLAST of mRNA_P-wetherbeei_contig53681.1.1 vs. uniprot
Match: UPI001C23BCD6 (cytochrome c n=1 Tax=Reyranella sp. MMS21-HV4-11 TaxID=2849149 RepID=UPI001C23BCD6)

HSP 1 Score: 200 bits (509), Expect = 6.680e-64
Identity = 103/132 (78.03%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    1 GGATLAFAQADVIKQRQDNRKAAGAAMRAIKGIIDAKGDTKGAVEQAAKLKELELAFVKMFPAGSDKGETKALPVVWTDWAGFEAANKASLAAYDKLAVAAGSGDRAALTVAFGDTGKTCGACHDKYRAKAN 396
            GGAT+A AQ DVI QR+DNRK A AAMRA+K I+DAKG T GAVEQAAKLK LE AFVKMFPAGSDKGET+ALP VWTDWAGF+AA+KAS AAYDKLAVAAGSG+  AL  AF D GKTCGACH K++AKAN
Sbjct:   20 GGATIAMAQGDVIAQRKDNRKQAAAAMRAVKAIVDAKGPTAGAVEQAAKLKTLEAAFVKMFPAGSDKGETRALPAVWTDWAGFQAASKASDAAYDKLAVAAGSGNTEALATAFADVGKTCGACHQKFQAKAN 151          
BLAST of mRNA_P-wetherbeei_contig53681.1.1 vs. uniprot
Match: A0A1Q3L3D8_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1Q3L3D8_9PROT)

HSP 1 Score: 197 bits (501), Expect = 9.690e-63
Identity = 103/132 (78.03%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    1 GGATLAFAQADVIKQRQDNRKAAGAAMRAIKGIIDAKGDTKGAVEQAAKLKELELAFVKMFPAGSDKGETKALPVVWTDWAGFEAANKASLAAYDKLAVAAGSGDRAALTVAFGDTGKTCGACHDKYRAKAN 396
            GGAT+A AQ DVI +R++NRK   AAMRAIKGIIDAKG T GAVEQAAKLK LE AF KMFPAGSDKG+TKALP +WTD AGF AA+KAS AAYDKLAVAAGSG+  ALT AF +TGKTCGACHDK+RAKAN
Sbjct:   16 GGATIAMAQGDVIAERRENRKQTAAAMRAIKGIIDAKGPTSGAVEQAAKLKTLEAAFEKMFPAGSDKGDTKALPAIWTDMAGFRAASKASDAAYDKLAVAAGSGNLEALTAAFAETGKTCGACHDKFRAKAN 147          
BLAST of mRNA_P-wetherbeei_contig53681.1.1 vs. uniprot
Match: A0A537NIN3_9PROT (Cytochrome c n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NIN3_9PROT)

HSP 1 Score: 197 bits (501), Expect = 1.140e-62
Identity = 101/132 (76.52%), Postives = 112/132 (84.85%), Query Frame = 1
Query:    1 GGATLAFAQADVIKQRQDNRKAAGAAMRAIKGIIDAKGDTKGAVEQAAKLKELELAFVKMFPAGSDKGETKALPVVWTDWAGFEAANKASLAAYDKLAVAAGSGDRAALTVAFGDTGKTCGACHDKYRAKAN 396
            GG T+A AQADVIKQRQDNRK   A MR+IKG+IDAKGD K  V  AAKLK+LELAF K+FPAGSDKGETKALP VW+D AGF+AA+K + AAYDKLA AAGSGD AA+T AFGDTGK CGACHDK+RAKAN
Sbjct:   21 GGTTIALAQADVIKQRQDNRKETAATMRSIKGVIDAKGDVKAVVASAAKLKQLELAFDKLFPAGSDKGETKALPAVWSDMAGFQAASKNADAAYDKLAAAAGSGDLAAVTAAFGDTGKACGACHDKFRAKAN 152          
BLAST of mRNA_P-wetherbeei_contig53681.1.1 vs. uniprot
Match: A0A6N6ZSE2_9PROT (Cytochrome C n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6N6ZSE2_9PROT)

HSP 1 Score: 197 bits (500), Expect = 1.570e-62
Identity = 102/132 (77.27%), Postives = 112/132 (84.85%), Query Frame = 1
Query:    1 GGATLAFAQADVIKQRQDNRKAAGAAMRAIKGIIDAKGDTKGAVEQAAKLKELELAFVKMFPAGSDKGETKALPVVWTDWAGFEAANKASLAAYDKLAVAAGSGDRAALTVAFGDTGKTCGACHDKYRAKAN 396
            GGAT+A AQ DVI QR+DNRK   AAMRAIK I+DAKG T  AVEQAAKLK LE +FVKMFPAGSDKGET+ALP VWTDWAGFEAA+KA+ AAYDKLAVAAGSG+  AL  AF DTGKTCGACH K++AKAN
Sbjct:   20 GGATIAMAQGDVIAQRKDNRKQTAAAMRAIKAIVDAKGPTAPAVEQAAKLKTLEASFVKMFPAGSDKGETRALPAVWTDWAGFEAASKAADAAYDKLAVAAGSGNAEALATAFADTGKTCGACHQKFQAKAN 151          
BLAST of mRNA_P-wetherbeei_contig53681.1.1 vs. uniprot
Match: A0A1F3A0M0_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 TaxID=1797225 RepID=A0A1F3A0M0_9PROT)

HSP 1 Score: 196 bits (498), Expect = 3.270e-62
Identity = 103/130 (79.23%), Postives = 113/130 (86.92%), Query Frame = 1
Query:    1 GGATLAFAQADVIKQRQDNRKAAGAAMRAIKGIIDAKGDTKGAVEQAAKLKELELAFVKMFPAGSDKGETKALPVVWTDWAGFEAANKASLAAYDKLAVAAGSGDRAALTVAFGDTGKTCGACHDKYRAK 390
            GGAT+A AQ DVI QR++NRK   AAMRAIKGIIDAKG T GAVEQAAKLK LELAFVK+FPAGSDKGETKALP VW+D AGF+AA+KA+ AAYDKLAVAAGSGD AALT AFG TGK CGACH+K+R K
Sbjct:   20 GGATMALAQGDVIAQRKENRKQTAAAMRAIKGIIDAKGATSGAVEQAAKLKTLELAFVKLFPAGSDKGETKALPTVWSDRAGFDAASKAADAAYDKLAVAAGSGDMAALTAAFGATGKACGACHEKFRVK 149          
BLAST of mRNA_P-wetherbeei_contig53681.1.1 vs. uniprot
Match: A0A1T4R5D4_9HYPH (Cytochrome c556 n=2 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4R5D4_9HYPH)

HSP 1 Score: 182 bits (462), Expect = 7.890e-57
Identity = 97/132 (73.48%), Postives = 110/132 (83.33%), Query Frame = 1
Query:    1 GGATLAFAQADVIKQRQDNRKAAGAAMRAIKGIIDAKGDTKGAVEQAAKLKELELAFVKMFPAGSDKGETKALPVVWTDWAGFEAANKASLAAYDKLAVAAGSGDRAALTVAFGDTGKTCGACHDKYRAKAN 396
            G ATLA AQADV+KQRQ+NRK   AAMRAIKG+ID+KGD K  V+QAAKLKELE AFVKMFPAGSDK ++KALP VW+D AGF+AA+KA+ AAYDKLAVA GSGD  A+  AF DTGK CGACH K+RAK N
Sbjct:   15 GSATLAVAQADVVKQRQENRKQTAAAMRAIKGVIDSKGDAKIVVQQAAKLKELEAAFVKMFPAGSDK-DSKALPAVWSDQAGFQAASKAADAAYDKLAVAGGSGDFTAIATAFQDTGKACGACHQKFRAKDN 145          
BLAST of mRNA_P-wetherbeei_contig53681.1.1 vs. uniprot
Match: A0A5C8PJN3_9HYPH (Cytochrome c n=2 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PJN3_9HYPH)

HSP 1 Score: 164 bits (414), Expect = 1.450e-49
Identity = 87/127 (68.50%), Postives = 98/127 (77.17%), Query Frame = 1
Query:   10 TLAFAQADVIKQRQDNRKAAGAAMRAIKGIIDAKGDTKGAVEQAAKLKELELAFVKMFPAGSDKGETKALPVVWTDWAGFEAANKASLAAYDKLAVAAGSGDRAALTVAFGDTGKTCGACHDKYRAK 390
            ++A AQ D I  R+DNRK AGA M+AIKGIIDAKG   G V+ AAKLKEL+LAF  +FPAGSDKGETKALPVVW+D AGF AANKA   A D L  AAGSGD A +  AFG+  KTCGACHDK+RAK
Sbjct:   16 SVALAQGDPIAARKDNRKQAGAQMKAIKGIIDAKGPASGVVQAAAKLKELQLAFPALFPAGSDKGETKALPVVWSDKAGFAAANKAQDTALDALTAAAGSGDMAKIGEAFGNAAKTCGACHDKFRAK 142          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53681.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1H8RMT4_9PROT2.840e-6580.30Cytochrome c556 n=3 Tax=Alphaproteobacteria TaxID=... [more]
A0A521M2W7_9HYPH3.240e-6580.77Cytochrome c n=2 Tax=Reyranella sp. TaxID=1929291 ... [more]
A0A521KWB3_9HYPH2.330e-6479.55Cytochrome c n=1 Tax=Reyranella sp. TaxID=1929291 ... [more]
UPI001C23BCD66.680e-6478.03cytochrome c n=1 Tax=Reyranella sp. MMS21-HV4-11 T... [more]
A0A1Q3L3D8_9PROT9.690e-6378.03Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]
A0A537NIN3_9PROT1.140e-6276.52Cytochrome c n=1 Tax=Alphaproteobacteria bacterium... [more]
A0A6N6ZSE2_9PROT1.570e-6277.27Cytochrome C n=4 Tax=Alphaproteobacteria TaxID=282... [more]
A0A1F3A0M0_9PROT3.270e-6279.23Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A1T4R5D4_9HYPH7.890e-5773.48Cytochrome c556 n=2 Tax=Enhydrobacter aerosaccus T... [more]
A0A5C8PJN3_9HYPH1.450e-4968.50Cytochrome c n=2 Tax=Vineibacter terrae TaxID=2586... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53681contigP-wetherbeei_contig53681:138..536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1205680.CAKO01000038_gene1698
PFAMsCytochrom_C_2
Model size399
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.65e-63
EggNOG OGsCOG3909@1|root,COG3909@2|Bacteria,1PT45@1224|Proteobacteria,2UJR5@28211|Alphaproteobacteria
DescriptionCytochrome C'
Cds size399
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186802.8856177-CDS-P-wetherbeei_contig53681:137..5361683186802.8856177-CDS-P-wetherbeei_contig53681:137..536Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53681 138..536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53681.1.1prot_P-wetherbeei_contig53681.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53681 138..536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53681.1.1

>prot_P-wetherbeei_contig53681.1.1 ID=prot_P-wetherbeei_contig53681.1.1|Name=mRNA_P-wetherbeei_contig53681.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
GGATLAFAQADVIKQRQDNRKAAGAAMRAIKGIIDAKGDTKGAVEQAAKL
KELELAFVKMFPAGSDKGETKALPVVWTDWAGFEAANKASLAAYDKLAVA
AGSGDRAALTVAFGDTGKTCGACHDKYRAKAN*
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mRNA from alignment at P-wetherbeei_contig53681:138..536-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53681.1.1 ID=mRNA_P-wetherbeei_contig53681.1.1|Name=mRNA_P-wetherbeei_contig53681.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig53681:138..536- (Phaeothamnion wetherbeei SAG_119_79)
GGGGGCGCGACGCTCGCCTTCGCGCAGGCTGACGTCATCAAGCAGCGGCA GGACAACCGCAAGGCGGCCGGCGCCGCGATGCGCGCCATCAAGGGAATCA TCGACGCCAAGGGCGACACCAAGGGAGCGGTCGAACAGGCCGCCAAGCTC AAGGAGCTTGAGCTTGCCTTCGTGAAGATGTTCCCGGCCGGCTCCGACAA GGGCGAGACCAAGGCGCTGCCTGTGGTCTGGACCGATTGGGCGGGCTTCG AAGCGGCCAACAAGGCGTCGCTGGCCGCCTACGACAAGCTCGCGGTCGCC GCGGGCTCGGGCGATCGGGCGGCGCTCACAGTCGCTTTCGGCGATACCGG CAAGACCTGCGGCGCCTGCCACGACAAGTACCGCGCCAAGGCGAACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53681:138..536-

>mRNA_P-wetherbeei_contig53681.1.1 ID=mRNA_P-wetherbeei_contig53681.1.1|Name=mRNA_P-wetherbeei_contig53681.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig53681:138..536- (Phaeothamnion wetherbeei SAG_119_79)
GGGGGCGCGACGCTCGCCTTCGCGCAGGCTGACGTCATCAAGCAGCGGCA
GGACAACCGCAAGGCGGCCGGCGCCGCGATGCGCGCCATCAAGGGAATCA
TCGACGCCAAGGGCGACACCAAGGGAGCGGTCGAACAGGCCGCCAAGCTC
AAGGAGCTTGAGCTTGCCTTCGTGAAGATGTTCCCGGCCGGCTCCGACAA
GGGCGAGACCAAGGCGCTGCCTGTGGTCTGGACCGATTGGGCGGGCTTCG
AAGCGGCCAACAAGGCGTCGCTGGCCGCCTACGACAAGCTCGCGGTCGCC
GCGGGCTCGGGCGATCGGGCGGCGCTCACAGTCGCTTTCGGCGATACCGG
CAAGACCTGCGGCGCCTGCCACGACAAGTACCGCGCCAAGGCGAACTGA
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