mRNA_P-wetherbeei_contig53669.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53669.1.1
Unique NamemRNA_P-wetherbeei_contig53669.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: A0A157ZSN8_9BURK (Two component LuxR family transcriptional regulator n=2 Tax=Caballeronia temeraria TaxID=1777137 RepID=A0A157ZSN8_9BURK)

HSP 1 Score: 76.3 bits (186), Expect = 1.100e-14
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMADQTRS 219
            E+ IEL +G++ GEIG+FSP H RT++ IC  D D+ T+++    RLY  +P+FALY+V  IA RL AD+ R+
Sbjct:  266 ELGIELGAGTVLGEIGLFSPEHRRTSTVICKTDCDMRTVSAADAIRLYYQDPEFALYLVRLIASRLQADKERN 338          
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: A0A656QFY6_9BURK (Cyclic nucleotide-binding protein n=2 Tax=Caballeronia zhejiangensis TaxID=871203 RepID=A0A656QFY6_9BURK)

HSP 1 Score: 73.9 bits (180), Expect = 7.580e-14
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMADQTR 216
            E+ IEL +G++ GEIG+FSP H RT++ IC  D ++ T+++    RLY   P+FALY+V  IA RL AD+ R
Sbjct:  263 ELGIELGAGTVLGEIGLFSPEHRRTSTVICKTDCEMRTVSAADAIRLYYQEPEFALYLVQLIASRLQADKDR 334          
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: A0A1N6K616_9BURK (DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains n=1 Tax=Paraburkholderia phenazinium TaxID=60549 RepID=A0A1N6K616_9BURK)

HSP 1 Score: 71.2 bits (173), Expect = 7.630e-13
Identity = 30/72 (41.67%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMADQTR 216
            EI +E+ +G++ GEIG+FSP+H RT +A+C  D ++  +++    R+Y  +P+FA Y+V  I +RL AD++R
Sbjct:  270 EIGVEVGAGTILGEIGLFSPDHRRTCTAVCKSDCELLMVSATDAMRMYYQDPEFATYLVRLITRRLEADKSR 341          
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: A0A7W8L2Q2_9BURK (DNA-binding NarL/FixJ family response regulator n=3 Tax=Paraburkholderia TaxID=1822464 RepID=A0A7W8L2Q2_9BURK)

HSP 1 Score: 70.5 bits (171), Expect = 1.420e-12
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMADQTRSV 222
            E+ I++ +G++ GEIG+FSP + RT++AIC  D ++ T+++     LY   P+FALY++  IA RL AD++R V
Sbjct:  269 ELGIDMGAGTVLGEIGLFSPEYRRTSTAICKTDCEMRTVSAADAISLYYQEPEFALYLIQLIASRLQADKSRRV 342          
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: UPI001AE4EEAF (LuxR C-terminal-related transcriptional regulator n=1 Tax=Paraburkholderia sp. LEh10 TaxID=2821353 RepID=UPI001AE4EEAF)

HSP 1 Score: 69.7 bits (169), Expect = 2.710e-12
Identity = 30/72 (41.67%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMADQTR 216
            E+ +++ +G++ GEIG+FSP + RT++A+C  D ++ T+++    RLY   P+FALY++  IA RL AD  R
Sbjct:  269 ELGLDMGAGTVLGEIGLFSPEYRRTSTAVCKTDCEMRTVSAADAIRLYYQEPEFALYLIQLIASRLQADNAR 340          
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: A0A4P8IZP6_9BURK (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Burkholderia sp. DHOD12 TaxID=2571746 RepID=A0A4P8IZP6_9BURK)

HSP 1 Score: 65.1 bits (157), Expect = 1.260e-10
Identity = 28/73 (38.36%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMADQTRS 219
            EI IE++ G++ GEIG+FS +H RT +A C  D ++ ++++ +  R Y  +P+FA +++  I +RL+ D++RS
Sbjct:  269 EIGIEVSPGTIVGEIGLFSADHRRTCTARCESDCELLSMSAMEAMRFYYQDPEFAAFLIQLITRRLVDDKSRS 341          
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: UPI00131ACEE7 (LuxR C-terminal-related transcriptional regulator n=1 Tax=Burkholderia sp. S171 TaxID=1641860 RepID=UPI00131ACEE7)

HSP 1 Score: 64.3 bits (155), Expect = 2.340e-10
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMADQTR 216
            E  IEL +G++ GEIG+FSP H RT +A+C    ++  +++    RLY   P+FAL+++  I +RL AD  R
Sbjct:  265 EFGIELGAGTVLGEIGLFSPEHRRTCTAVCRSVCEMRVVSAADAVRLYYQEPEFALHLLQLIVRRLQADSLR 336          
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: A0A515DAB7_9BURK (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Rhodoferax sediminis TaxID=2509614 RepID=A0A515DAB7_9BURK)

HSP 1 Score: 62.8 bits (151), Expect = 4.170e-10
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMADQTR 216
            E+   L  G++FGE+G+FSP H R  +A C+G   V ++    VK+LY  NP F   ++  +A+RL AD  R
Sbjct:  148 EVGSVLGPGTIFGEVGLFSPGHRRALTARCIGACTVLSIDESTVKQLYYQNPAFGFKLIALVARRLSADVER 219          
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: A0A0L0MFW7_9BURK (Transcriptional regulator, LuxR family n=1 Tax=Candidatus Burkholderia verschuerenii TaxID=242163 RepID=A0A0L0MFW7_9BURK)

HSP 1 Score: 63.5 bits (153), Expect = 4.450e-10
Identity = 27/60 (45.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVH 180
            E+ IEL +GS+FGEIG+FSP H RT++A+C    ++  +++D   RLY   P+FA+Y+++
Sbjct:  264 ELGIELGAGSVFGEIGLFSPKHRRTSTAVCKTVCEMRAVSADDAIRLYYQEPEFAMYLIN 323          
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: A0A1G6CBE1_9HYPH (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Bauldia litoralis TaxID=665467 RepID=A0A1G6CBE1_9HYPH)

HSP 1 Score: 59.7 bits (143), Expect = 4.810e-9
Identity = 26/69 (37.68%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMAD 207
            E+D+E+ SG+M GEIGVFSP+ TR  +A C+ +  +  ++ D+V+ L   +P+ A  ++  +  RL+ D
Sbjct:  125 ELDVEVNSGAMLGEIGVFSPHGTRMATATCIDECRLQRISRDKVRELVFQDPRIAFNLIGVVTGRLIED 193          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A157ZSN8_9BURK1.100e-1449.32Two component LuxR family transcriptional regulato... [more]
A0A656QFY6_9BURK7.580e-1448.61Cyclic nucleotide-binding protein n=2 Tax=Caballer... [more]
A0A1N6K616_9BURK7.630e-1341.67DNA-binding response regulator, NarL/FixJ family, ... [more]
A0A7W8L2Q2_9BURK1.420e-1243.24DNA-binding NarL/FixJ family response regulator n=... [more]
UPI001AE4EEAF2.710e-1241.67LuxR C-terminal-related transcriptional regulator ... [more]
A0A4P8IZP6_9BURK1.260e-1038.36Cyclic nucleotide-binding domain-containing protei... [more]
UPI00131ACEE72.340e-1041.67LuxR C-terminal-related transcriptional regulator ... [more]
A0A515DAB7_9BURK4.170e-1040.28Cyclic nucleotide-binding domain-containing protei... [more]
A0A0L0MFW7_9BURK4.450e-1045.00Transcriptional regulator, LuxR family n=1 Tax=Can... [more]
A0A1G6CBE1_9HYPH4.810e-937.68Cyclic nucleotide-binding domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53669contigP-wetherbeei_contig53669:3..227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1458357.BG58_36060
PFAMsGerE,cNMP_binding
Model size225
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.41e-10
EggNOG OGsCOG0664@1|root,COG2197@1|root,COG0664@2|Bacteria,COG2197@2|Bacteria,1RAW9@1224|Proteobacteria,2VQXZ@28216|Betaproteobacteria,1KAMV@119060|Burkholderiaceae
Descriptionhelix_turn_helix, Lux Regulon
Cds size195
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186802.7054315-UTR-P-wetherbeei_contig53669:2..321683186802.7054315-UTR-P-wetherbeei_contig53669:2..32Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53669 3..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186802.7180717-CDS-P-wetherbeei_contig53669:32..2271683186802.7180717-CDS-P-wetherbeei_contig53669:32..227Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53669 33..227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53669.1.1prot_P-wetherbeei_contig53669.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53669 33..227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53669.1.1

>prot_P-wetherbeei_contig53669.1.1 ID=prot_P-wetherbeei_contig53669.1.1|Name=mRNA_P-wetherbeei_contig53669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
MFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVH
QIAQRLMADQTRSV*
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mRNA from alignment at P-wetherbeei_contig53669:3..227+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53669.1.1 ID=mRNA_P-wetherbeei_contig53669.1.1|Name=mRNA_P-wetherbeei_contig53669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig53669:3..227+ (Phaeothamnion wetherbeei SAG_119_79)
GAGATCGATATTGAGCTCACGAGTGGTTCGATGTTCGGCGAAATCGGCGT TTTCTCGCCGAACCATACACGCACCACCTCCGCCATTTGCGTGGGCGACG CGGATGTGTTCACCCTGACCTCCGACCAGGTCAAGCGCCTGTATCTGCTG AATCCGCAGTTTGCGCTATATGTCGTGCACCAGATTGCCCAACGACTGAT GGCCGATCAGACGCGATCGGTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53669:3..227+

>mRNA_P-wetherbeei_contig53669.1.1 ID=mRNA_P-wetherbeei_contig53669.1.1|Name=mRNA_P-wetherbeei_contig53669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig53669:3..227+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGGCGAAATCGGCGTTTTCTCGCCGAACCATACACGCACCACCTC
CGCCATTTGCGTGGGCGACGCGGATGTGTTCACCCTGACCTCCGACCAGG
TCAAGCGCCTGTATCTGCTGAATCCGCAGTTTGCGCTATATGTCGTGCAC
CAGATTGCCCAACGACTGATGGCCGATCAGACGCGATCGGTCTGA
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