mRNA_P-wetherbeei_contig53640.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53640.1.1
Unique NamemRNA_P-wetherbeei_contig53640.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53640.1.1 vs. uniprot
Match: A0A127F3X4_9HYPH (Family 1 extracellular solute-binding protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127F3X4_9HYPH)

HSP 1 Score: 241 bits (614), Expect = 1.930e-76
Identity = 110/173 (63.58%), Postives = 146/173 (84.39%), Query Frame = 1
Query:    1 PHDDDAALYLFHLIVRKHGWNWMDRYMANKPHFIQGHLPVARAIAGGEMAASLDATITTAGGLKREGKPLEIAFSTEDETPLFTVTGGIFKDAPHQSAAKLFVTWYIAKEQQARLGTFSPRLDVPPPPGFKPLTSYKIANAFREFIIDDKLVADLRKRFEAYTGPALNKGGVR 519
            P DDDA LYLFH+I++K+GWNWM +Y ANKP+++QGHLPVAR++A GE  A+ DA+ ++    +R+GK L++ +S EDETP+FT+TGGIFKDAPH +AAKL++TW++AKEQQ+R+G+FS R DV PP GFKPLTSYKIAN +REF++D+KL+  LRKR E +TGP +NKGGVR
Sbjct:  178 PADDDATLYLFHIIIQKYGWNWMTKYTANKPNYVQGHLPVARSVATGENIATFDAS-SSVWEFRRQGK-LDVVWSGEDETPVFTLTGGIFKDAPHPNAAKLYMTWFLAKEQQSRVGSFSSRQDVAPPEGFKPLTSYKIANNYREFMVDEKLIESLRKRMEGFTGPVVNKGGVR 348          
BLAST of mRNA_P-wetherbeei_contig53640.1.1 vs. uniprot
Match: A0A1H4KDW3_9HYPH (ABC-type Fe3+ transport system, substrate-binding protein n=1 Tax=Beijerinckia sp. 28-YEA-48 TaxID=1882748 RepID=A0A1H4KDW3_9HYPH)

HSP 1 Score: 222 bits (565), Expect = 4.710e-69
Identity = 104/173 (60.12%), Postives = 134/173 (77.46%), Query Frame = 1
Query:    1 PHDDDAALYLFHLIVRKHGWNWMDRYMANKPHFIQGHLPVARAIAGGEMAASLDATITTAGGLKREGKPLEIAFSTEDETPLFTVTGGIFKDAPHQSAAKLFVTWYIAKEQQARLGTFSPRLDVPPPPGFKPLTSYKIANAFREFIIDDKLVADLRKRFEAYTGPALNKGGVR 519
            P DDDA LY+F+ IV+K+GWN+MDRYMANKP F+QGHL VAR +A G  +A+ DATI     L++ G+P+E+  S +DETP FT+T GIFKDAPH +AAKLF+ WY+A EQQ R G+FS R DV PP GF+PL+SY++AN +RE + +D L+ +LR RFE YTGP +N GGVR
Sbjct:  176 PADDDATLYVFYTIVQKYGWNYMDRYMANKPKFVQGHLGVARGLADGSSSATFDATINVE-DLRKAGQPVEMFVSEQDETPAFTLTAGIFKDAPHTNAAKLFLNWYMAPEQQRRTGSFSARTDVGPPEGFQPLSSYRLANNYRELVSNDALMTELRARFEKYTGPVVNTGGVR 347          
BLAST of mRNA_P-wetherbeei_contig53640.1.1 vs. uniprot
Match: A0A1H4L8W6_9HYPH (ABC-type Fe3+ transport system, substrate-binding protein n=1 Tax=Beijerinckia sp. 28-YEA-48 TaxID=1882748 RepID=A0A1H4L8W6_9HYPH)

HSP 1 Score: 215 bits (547), Expect = 2.890e-66
Identity = 101/173 (58.38%), Postives = 127/173 (73.41%), Query Frame = 1
Query:    1 PHDDDAALYLFHLIVRKHGWNWMDRYMANKPHFIQGHLPVARAIAGGEMAASLDATITTAGGLKREGKPLEIAFSTEDETPLFTVTGGIFKDAPHQSAAKLFVTWYIAKEQQARLGTFSPRLDVPPPPGFKPLTSYKIANAFREFIIDDKLVADLRKRFEAYTGPALNKGGVR 519
            P DDDA LY+F+ IV+K+GW++MDR+MANKP FIQGHL V RAIA GE   + DAT +T G LK+ G P+E+    +D    FT+T GIFKDAPH +AAKLF+ WY+  EQQ R G FS R DVPPP GFKPL++   A  +  F+ ++ L+ DLRKRFEAYTGP +NKGGV+
Sbjct:  181 PADDDATLYVFYTIVQKYGWSYMDRFMANKPSFIQGHLGVIRAIASGERLVTFDATTSTTGSLKQSGAPVELVIPQDDPIVTFTLTAGIFKDAPHPNAAKLFLNWYLQPEQQRRSGVFSARTDVPPPAGFKPLSAANAALDYNAFVSNEPLIIDLRKRFEAYTGPVVNKGGVQ 353          
BLAST of mRNA_P-wetherbeei_contig53640.1.1 vs. uniprot
Match: A0A1Q4BI60_9HYPH (Uncharacterized protein n=1 Tax=Rhizobiales bacterium 62-17 TaxID=1895810 RepID=A0A1Q4BI60_9HYPH)

HSP 1 Score: 215 bits (547), Expect = 2.890e-66
Identity = 102/173 (58.96%), Postives = 126/173 (72.83%), Query Frame = 1
Query:    1 PHDDDAALYLFHLIVRKHGWNWMDRYMANKPHFIQGHLPVARAIAGGEMAASLDATITTAGGLKREGKPLEIAFSTEDETPLFTVTGGIFKDAPHQSAAKLFVTWYIAKEQQARLGTFSPRLDVPPPPGFKPLTSYKIANAFREFIIDDKLVADLRKRFEAYTGPALNKGGVR 519
            P DDDA LY F+ IV+K+GW++MDR+MANKP FIQGHL V RAIA GE   + DAT +T   LK+ G P+E+    +    +FT+T GIFKDAPH +AAKLF+ WY+  EQQ R G FS R DVPPP GFKPLTS   A  + +F+ +D L+ DLRKRFEAYTGP +NKGGV+
Sbjct:  181 PADDDATLYAFYTIVQKYGWSYMDRFMANKPSFIQGHLGVIRAIASGERHVTFDATTSTTSALKQTGAPIELVVPQDHPIVVFTLTAGIFKDAPHPNAAKLFLNWYMQPEQQRRSGVFSARTDVPPPAGFKPLTSANAALDYNQFVSNDSLITDLRKRFEAYTGPVVNKGGVQ 353          
BLAST of mRNA_P-wetherbeei_contig53640.1.1 vs. uniprot
Match: A0A1Q7BPE9_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BPE9_9PROT)

HSP 1 Score: 206 bits (525), Expect = 5.620e-63
Identity = 94/173 (54.34%), Postives = 128/173 (73.99%), Query Frame = 1
Query:    1 PHDDDAALYLFHLIVRKHGWNWMDRYMANKPHFIQGHLPVARAIAGGEMAASLDATITTAGGLKREGKPLEIAFSTEDETPLFTVTGGIFKDAPHQSAAKLFVTWYIAKEQQARLGTFSPRLDVPPPPGFKPLTSYKIANAFREFIIDDKLVADLRKRFEAYTGPALNKGGVR 519
            P DDDA L+LFH +V+K+ W+WMD+YMANKP+FIQGHL   R+IA G+   ++D+       +K+EGKP+   FST D TP++ +TG IFK APH +AA+LF++W +  EQQA  GT+S R DVPPP G+KP+ SYK+ N +R+F+ ++  V +LRKRFE YTGP +N GGVR
Sbjct:  179 PADDDATLWLFHHVVQKYRWDWMDKYMANKPNFIQGHLGQQRSIASGQNFVAIDSIFNITEPMKKEGKPVASHFSTVDATPIWPLTGAIFKQAPHPNAARLFMSWLLEPEQQATTGTWSARRDVPPPAGYKPILSYKVVNDYRDFLTNETQVIELRKRFEHYTGPVVNVGGVR 351          
BLAST of mRNA_P-wetherbeei_contig53640.1.1 vs. uniprot
Match: A0A537SR87_9PROT (Extracellular solute-binding protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SR87_9PROT)

HSP 1 Score: 201 bits (510), Expect = 1.040e-62
Identity = 91/173 (52.60%), Postives = 125/173 (72.25%), Query Frame = 1
Query:    1 PHDDDAALYLFHLIVRKHGWNWMDRYMANKPHFIQGHLPVARAIAGGEMAASLDATITTAGGLKREGKPLEIAFSTEDETPLFTVTGGIFKDAPHQSAAKLFVTWYIAKEQQARLGTFSPRLDVPPPPGFKPLTSYKIANAFREFIIDDKLVADLRKRFEAYTGPALNKGGVR 519
            P+DDD  LYLF+ IV+K+GW +MD+YMAN P +++GHL  ARA+A G+ AA+ D       G+K+  +P ++AFST D  P++  T  IFKDAPH +AAKL++TW++AKEQQ+R GT+S RLDVPPP G KP+  Y++AN FR FI ++KL  +LRKRFE Y G    +  +R
Sbjct:   25 PNDDDVTLYLFYTIVQKYGWEFMDKYMANNPQWVRGHLGAARAVASGQAAATFDTMTNVTLGMKKSNQPTDVAFSTVDPLPIWPQTTAIFKDAPHPNAAKLYITWFLAKEQQSRTGTWSTRLDVPPPSGLKPIFDYQLANEFRSFITNEKLTEELRKRFENYIGKPKGEPVIR 197          
BLAST of mRNA_P-wetherbeei_contig53640.1.1 vs. uniprot
Match: A0A537URX5_9PROT (Extracellular solute-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537URX5_9PROT)

HSP 1 Score: 204 bits (520), Expect = 3.090e-62
Identity = 93/173 (53.76%), Postives = 127/173 (73.41%), Query Frame = 1
Query:    1 PHDDDAALYLFHLIVRKHGWNWMDRYMANKPHFIQGHLPVARAIAGGEMAASLDATITTAGGLKREGKPLEIAFSTEDETPLFTVTGGIFKDAPHQSAAKLFVTWYIAKEQQARLGTFSPRLDVPPPPGFKPLTSYKIANAFREFIIDDKLVADLRKRFEAYTGPALNKGGVR 519
            P DDDA L+LFH +VRK+GW+WMD+YM NKP+FIQGHL   R++A G+   ++D+       +K+EGKP+   FST D TP++ +TG IFK APH +AA+LF+ W +  EQQA  G++S R DVPPP G+KP+ SYK+ N +R+F+ ++  + DLRKRFE YTGP +N GGVR
Sbjct:  178 PADDDATLWLFHHVVRKYGWDWMDKYMLNKPNFIQGHLGQQRSVASGQNIVAIDSIFNITEPMKQEGKPVASHFSTVDATPIWPLTGAIFKKAPHPNAARLFMGWLLEPEQQAATGSWSVRGDVPPPAGYKPIFSYKVVNDYRDFLTNEAQLIDLRKRFEHYTGPVVNVGGVR 350          
BLAST of mRNA_P-wetherbeei_contig53640.1.1 vs. uniprot
Match: UPI00110F19CB (extracellular solute-binding protein n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI00110F19CB)

HSP 1 Score: 206 bits (523), Expect = 5.910e-62
Identity = 95/173 (54.91%), Postives = 126/173 (72.83%), Query Frame = 1
Query:    1 PHDDDAALYLFHLIVRKHGWNWMDRYMANKPHFIQGHLPVARAIAGGEMAASLDATITTAGGLKREGKPLEIAFSTEDETPLFTVTGGIFKDAPHQSAAKLFVTWYIAKEQQARLGTFSPRLDVPPPPGFKPLTSYKIANAFREFIIDDKLVADLRKRFEAYTGPALNKGGVR 519
            P DDD  LY F+ +++K+GWN+MD+YMAN+P FIQGHL V R+IA G+   + D+ I+ A  LK +G+P  IA S  D  P++    GIFK APH +AAKLF+TWY+  +QQ+R+GT+SPR DVPPP G +P+ SYK+ N++REFI +  L+  LRKRFE YTGP  N GGVR
Sbjct:  242 PSDDDVTLYTFYSVIKKYGWNYMDQYMANQPTFIQGHLGVLRSIAKGDNLVTFDSVISIALTLKMQGEPQAIAISDVDPLPIWPFVAGIFKSAPHPNAAKLFLTWYLGVDQQSRIGTWSPRADVPPPSGLRPVLSYKVDNSYREFITNGPLLTKLRKRFEQYTGPVKNTGGVR 414          
BLAST of mRNA_P-wetherbeei_contig53640.1.1 vs. uniprot
Match: A0A127EY45_9HYPH (Fe3+ ABC transporter substrate-binding protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EY45_9HYPH)

HSP 1 Score: 190 bits (482), Expect = 1.510e-56
Identity = 86/173 (49.71%), Postives = 123/173 (71.10%), Query Frame = 1
Query:    1 PHDDDAALYLFHLIVRKHGWNWMDRYMANKPHFIQGHLPVARAIAGGEMAASLDATITTAGGLKREGKPLEIAFSTEDETPLFTVTGGIFKDAPHQSAAKLFVTWYIAKEQQARLGTFSPRLDVPPPPGFKPLTSYKIANAFREFIIDDKLVADLRKRFEAYTGPALNKGGVR 519
            P DDD  +++F  IV+KHGW+WMD++MA KP+FIQGHL   R+I  G+   + D+       LK++  P+E  F+ +D TP++ +TG IFK+APH +AAKLF++W +  EQQ    T+S R DVPPP G+KP+ SY++AN ++ F+ +D  +A+LRKRFE YTGP +N GGVR
Sbjct:  176 PADDDVTMWVFFHIVQKHGWDWMDKFMATKPNFIQGHLGQQRSIGTGQNLVTFDSIYNITTLLKKQKMPVESHFAEQDATPIWPLTGAIFKNAPHPTAAKLFLSWLLEPEQQIATETWSGRRDVPPPDGYKPILSYEVANDYKAFMTNDAQIAELRKRFETYTGPVVNAGGVR 348          
BLAST of mRNA_P-wetherbeei_contig53640.1.1 vs. uniprot
Match: A0A537VFG1_9PROT (Extracellular solute-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537VFG1_9PROT)

HSP 1 Score: 173 bits (438), Expect = 5.530e-50
Identity = 87/165 (52.73%), Postives = 112/165 (67.88%), Query Frame = 1
Query:    1 PHDDDAALYLFHLIVRKHGWNWMDRYMANKPHFI-QGHLPVARAIAGGEMAASLDATITTAGGLKREGKPLEIAFSTEDETPLFTVTGGIFKDAPHQSAAKLFVTWYIAKEQQARLGTFSPRLDVPPPPGFKPLTSYKIANAFREFIIDDKLVADLRKRFEAYTG 492
            P +DDA L +F ++V K+GW +MD+YMA KP F+  GH  V+ AIA GE  A+ D+T TT   LK+ GKP+E  FS  D TP+F V   IFK APH  AAKL++TWY+AKEQQ+R GTFS R DV PPPG +PL+SY I   +R  + D+  +  LR RF +Y G
Sbjct:  180 PTEDDAGLAVFTMVVGKYGWGYMDKYMAQKPVFVTSGHAAVSNAIAAGEKLATFDSTSTTP-RLKQAGKPIEPVFSRADPTPVFLVGAAIFKHAPHPDAAKLYLTWYLAKEQQSRSGTFSARSDVAPPPGLEPLSSYNIDRGYRALVSDEARLTQLRARFGSYIG 343          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53640.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127F3X4_9HYPH1.930e-7663.58Family 1 extracellular solute-binding protein n=1 ... [more]
A0A1H4KDW3_9HYPH4.710e-6960.12ABC-type Fe3+ transport system, substrate-binding ... [more]
A0A1H4L8W6_9HYPH2.890e-6658.38ABC-type Fe3+ transport system, substrate-binding ... [more]
A0A1Q4BI60_9HYPH2.890e-6658.96Uncharacterized protein n=1 Tax=Rhizobiales bacter... [more]
A0A1Q7BPE9_9PROT5.620e-6354.34Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A537SR87_9PROT1.040e-6252.60Extracellular solute-binding protein (Fragment) n=... [more]
A0A537URX5_9PROT3.090e-6253.76Extracellular solute-binding protein n=1 Tax=Alpha... [more]
UPI00110F19CB5.910e-6254.91extracellular solute-binding protein n=1 Tax=uncla... [more]
A0A127EY45_9HYPH1.510e-5649.71Fe3+ ABC transporter substrate-binding protein n=1... [more]
A0A537VFG1_9PROT5.530e-5052.73Extracellular solute-binding protein n=1 Tax=Alpha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53640contigP-wetherbeei_contig53640:1..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog266779.Meso_2940
PFAMsSBP_bac_6
Model size522
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.88e-37
EggNOG OGsCOG1840@1|root,COG1840@2|Bacteria,1MXZ8@1224|Proteobacteria,2V7D9@28211|Alphaproteobacteria,43KPE@69277|Phyllobacteriaceae
DescriptionBacterial extracellular solute-binding protein
Cds size522
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186802.519362-CDS-P-wetherbeei_contig53640:0..5221683186802.519362-CDS-P-wetherbeei_contig53640:0..522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53640 1..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53640.1.1prot_P-wetherbeei_contig53640.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53640 1..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53640.1.1

>prot_P-wetherbeei_contig53640.1.1 ID=prot_P-wetherbeei_contig53640.1.1|Name=mRNA_P-wetherbeei_contig53640.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
PHDDDAALYLFHLIVRKHGWNWMDRYMANKPHFIQGHLPVARAIAGGEMA
ASLDATITTAGGLKREGKPLEIAFSTEDETPLFTVTGGIFKDAPHQSAAK
LFVTWYIAKEQQARLGTFSPRLDVPPPPGFKPLTSYKIANAFREFIIDDK
LVADLRKRFEAYTGPALNKGGVR*
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mRNA from alignment at P-wetherbeei_contig53640:1..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53640.1.1 ID=mRNA_P-wetherbeei_contig53640.1.1|Name=mRNA_P-wetherbeei_contig53640.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig53640:1..522+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCACGACGACGATGCGGCGCTCTATCTGTTCCACCTCATCGTTCGCAA GCACGGCTGGAACTGGATGGACCGCTACATGGCCAACAAGCCGCATTTCA TACAGGGACACCTTCCCGTGGCGCGCGCGATCGCCGGCGGCGAAATGGCT GCTTCGCTCGACGCGACCATTACCACGGCTGGCGGGTTGAAGCGTGAAGG CAAACCGCTCGAAATTGCGTTCTCGACCGAGGACGAGACACCGTTGTTCA CCGTCACGGGCGGAATCTTCAAGGATGCACCGCATCAAAGCGCAGCCAAG CTTTTCGTCACCTGGTACATTGCGAAAGAGCAGCAGGCGCGGCTCGGTAC CTTCTCGCCACGGCTCGACGTACCGCCACCGCCAGGCTTCAAGCCGCTGA CCTCCTACAAGATCGCCAACGCGTTCCGGGAGTTCATCATCGACGACAAG CTGGTCGCAGACCTGCGCAAGCGGTTTGAAGCATATACCGGTCCAGCGTT GAACAAAGGTGGGGTCAGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53640:1..522+

>mRNA_P-wetherbeei_contig53640.1.1 ID=mRNA_P-wetherbeei_contig53640.1.1|Name=mRNA_P-wetherbeei_contig53640.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig53640:1..522+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCACGACGACGATGCGGCGCTCTATCTGTTCCACCTCATCGTTCGCAA
GCACGGCTGGAACTGGATGGACCGCTACATGGCCAACAAGCCGCATTTCA
TACAGGGACACCTTCCCGTGGCGCGCGCGATCGCCGGCGGCGAAATGGCT
GCTTCGCTCGACGCGACCATTACCACGGCTGGCGGGTTGAAGCGTGAAGG
CAAACCGCTCGAAATTGCGTTCTCGACCGAGGACGAGACACCGTTGTTCA
CCGTCACGGGCGGAATCTTCAAGGATGCACCGCATCAAAGCGCAGCCAAG
CTTTTCGTCACCTGGTACATTGCGAAAGAGCAGCAGGCGCGGCTCGGTAC
CTTCTCGCCACGGCTCGACGTACCGCCACCGCCAGGCTTCAAGCCGCTGA
CCTCCTACAAGATCGCCAACGCGTTCCGGGAGTTCATCATCGACGACAAG
CTGGTCGCAGACCTGCGCAAGCGGTTTGAAGCATATACCGGTCCAGCGTT
GAACAAAGGTGGGGTCAGGTAG
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