mRNA_P-wetherbeei_contig53634.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53634.1.1
Unique NamemRNA_P-wetherbeei_contig53634.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53634.1.1 vs. uniprot
Match: A0A7X7YV19_9BACT (Low-specificity L-threonine aldolase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X7YV19_9BACT)

HSP 1 Score: 209 bits (532), Expect = 4.160e-64
Identity = 107/173 (61.85%), Postives = 132/173 (76.30%), Query Frame = 1 
Query:    1 IPNLPDGTVALDAVAAAVRPDDVHCPRSGLLCLENTHNGCGGVPLSPEYVGAAAAAARAADLAVHVDGARLVNAAVALGVRPAVLVAATDTVSLCLSKGLGAPVGSLLAGPADFICRARRLRKALGGGMRQAGVVAAAGLEALINNFVRTRDDHDNARALSEGLAGVSGLQVD 519
            IPN PDGT+ L+ + AA+RPD+VH PR+ L+CLENTHN C GVPL+P+Y GA A  AR   L +H+DGARL NAAVALGV    L A+ D++S+CLSKGL APVGS++ G   FI  ARR+RK LGGGMRQAGV+AAAG+ AL     R R+DHDNAR L+EG+AG+ GL +D
Sbjct:  105 IPNQPDGTLRLEDIEAAIRPDNVHFPRTRLICLENTHNRCCGVPLTPQYTGAVADLARRRGLGIHLDGARLFNAAVALGVNVKELAASVDSLSICLSKGLAAPVGSVICGSKAFIAEARRVRKVLGGGMRQAGVLAAAGIVALEKMVDRLREDHDNARRLAEGIAGIEGLAID 277
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BLAST of mRNA_P-wetherbeei_contig53634.1.1 vs. uniprot
Match: S7TH56_DESML (Aromatic amino acid beta-eliminating lyase/threonine aldolase n=1 Tax=Desulfococcus multivorans DSM 2059 TaxID=1121405 RepID=S7TH56_DESML)

HSP 1 Score: 197 bits (500), Expect = 2.800e-59
Identity = 105/173 (60.69%), Postives = 124/173 (71.68%), Query Frame = 1 
Query:    1 IPNLPDGTVALDAVAAAVRPDDVHCPRSGLLCLENTHNGCGGVPLSPEYVGAAAAAARAADLAVHVDGARLVNAAVALGVRPAVLVAATDTVSLCLSKGLGAPVGSLLAGPADFICRARRLRKALGGGMRQAGVVAAAGLEALINNFVRTRDDHDNARALSEGLAGVSGLQVD 519
            IPN PDGT+ L+A  AA+RPDD+H PR+ L+ LENTHN CGG PL+P YV A    A A  L +HVDGAR+ NAA ALGV    L A  D++S CLSKGL APVGSLL G  +FI  ARR RK LGGGMRQAGV+AAAG+ AL     R  +DH NAR L+EGLA ++G+ VD
Sbjct:  105 IPNRPDGTLDLEATTAAIRPDDLHFPRTRLILLENTHNRCGGAPLTPAYVAAVGRLAAAHGLKLHVDGARIFNAAAALGVSVRELAAPADSISFCLSKGLAAPVGSLLCGSREFIAEARRNRKVLGGGMRQAGVIAAAGIVALTEMVDRLPEDHANARKLAEGLAEIAGVAVD 277
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BLAST of mRNA_P-wetherbeei_contig53634.1.1 vs. uniprot
Match: A0A835ZE62_9STRA (L-allo-threonine aldolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE62_9STRA)

HSP 1 Score: 197 bits (500), Expect = 6.030e-59
Identity = 106/166 (63.86%), Postives = 124/166 (74.70%), Query Frame = 1 
Query:   16 DGTVALDAVAAAVRPDDVHCPRSGLLCLENTHNGCGGVPLSPEYVGAAAAAARAADLAVHVDGARLVNAAVALGVRPAVLVAATDTVSLCLSKGLGAPVGSLLAGPADFICRARRLRKALGGGMRQAGVVAAAGLEALINNFVRTRDDHDNARALSEGLAGVSGLQ 513
            DGT+AL+ VAAA+R DDVHCPRS LLCLENTHN  GG PL   Y+  AA  A    L +H+DGARL NAAVA       L+   D+ S+CLSKGLGAPVGS+L G   F+ +ARRLRKALGGGMRQAGV+AAAGLEALINNF+R  DDH NA AL+ GLA + G++
Sbjct:  126 DGTLALNDVAAALRDDDVHCPRSRLLCLENTHNRAGGAPLPRAYLDDAARFAADRGLKLHIDGARLANAAVAQRTSMRHLLEGADSASICLSKGLGAPVGSVLVGSPGFVAKARRLRKALGGGMRQAGVLAAAGLEALINNFLRLSDDHANAAALARGLAAIRGVR 291
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BLAST of mRNA_P-wetherbeei_contig53634.1.1 vs. uniprot
Match: D8K1X7_DEHLB (Threonine aldolase n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) TaxID=552811 RepID=D8K1X7_DEHLB)

HSP 1 Score: 196 bits (497), Expect = 6.550e-59
Identity = 107/173 (61.85%), Postives = 125/173 (72.25%), Query Frame = 1 
Query:    1 IPNLPDGTVALDAVAAAVRPDDVHCPRSGLLCLENTHNGCGGVPLSPEYVGAAAAAARAADLAVHVDGARLVNAAVALGVRPAVLVAATDTVSLCLSKGLGAPVGSLLAGPADFICRARRLRKALGGGMRQAGVVAAAGLEALINNFVRTRDDHDNARALSEGLAGVSGLQVD 519
            +PN  DGT+ LD +  AVR D++H P S LLCLENTHN CGG PLS EY  AA   AR   L VH+DGARL NAAVAL V  A L A TD+V LCLSKGL APVGS+L G  DFI RAR+LRK  GGGMRQAGV+AAAG+ AL     R  +DH NAR L+EGL+ +SG++V+
Sbjct:  105 VPNADDGTIELDVIEQAVRDDNIHFPPSTLLCLENTHNFCGGAPLSAEYTRAAGETARQYGLKVHLDGARLFNAAVALKVTAAELCAPTDSVCLCLSKGLSAPVGSVLCGDRDFINRARKLRKMCGGGMRQAGVIAAAGITALETMTERLSEDHANARRLAEGLSRLSGIEVE 277
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BLAST of mRNA_P-wetherbeei_contig53634.1.1 vs. uniprot
Match: A0A7I8MXR0_9DELT (Low-specificity L-threonine aldolase (EC) n=1 Tax=Olavius algarvensis associated proteobacterium Delta 3 TaxID=426688 RepID=A0A7I8MXR0_9DELT)

HSP 1 Score: 194 bits (493), Expect = 3.160e-58
Identity = 104/173 (60.12%), Postives = 127/173 (73.41%), Query Frame = 1 
Query:    1 IPNLPDGTVALDAVAAAVRPDDVHCPRSGLLCLENTHNGCGGVPLSPEYVGAAAAAARAADLAVHVDGARLVNAAVALGVRPAVLVAATDTVSLCLSKGLGAPVGSLLAGPADFICRARRLRKALGGGMRQAGVVAAAGLEALINNFVRTRDDHDNARALSEGLAGVSGLQVD 519
            +PN PDG ++ +AV  AVR DDVH P + L+ LENTHN C G PLSPEY  A    AR   LA+H+DGAR+ NAA++LGV    L A  D+VS CLSKGL APVGSL+ G  +F+ RARR+RK LGGGMRQAGV+AAAG+ AL     R  +DHDNAR L++GLAG+SGLQ+D
Sbjct:  105 VPNQPDGRLSEEAVENAVRADDVHFPVTRLIALENTHNRCSGSPLSPEYTHAVGEIARRNGLALHIDGARIFNAAISLGVPVRDLTADADSVSFCLSKGLCAPVGSLVCGSREFVNRARRIRKVLGGGMRQAGVLAAAGIVALDEMVDRLAEDHDNARYLADGLAGISGLQID 277
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BLAST of mRNA_P-wetherbeei_contig53634.1.1 vs. uniprot
Match: A0A7C0Z8C2_9DELT (Low-specificity L-threonine aldolase n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A7C0Z8C2_9DELT)

HSP 1 Score: 193 bits (491), Expect = 5.670e-58
Identity = 104/173 (60.12%), Postives = 121/173 (69.94%), Query Frame = 1 
Query:    1 IPNLPDGTVALDAVAAAVRPDDVHCPRSGLLCLENTHNGCGGVPLSPEYVGAAAAAARAADLAVHVDGARLVNAAVALGVRPAVLVAATDTVSLCLSKGLGAPVGSLLAGPADFICRARRLRKALGGGMRQAGVVAAAGLEALINNFVRTRDDHDNARALSEGLAGVSGLQVD 519
            +PN PDGT+ L A+ AAVR DDVH PRS LL LENTHN C G PLS +Y+   AA A    L +HVDGARL NAAVAL    A LVA  D+VS CLSKGL APVGS++ G  +F+  ARR RK LGGGMRQAG++AAAG+ AL     R  +DH NAR L+EGL G+ GL  D
Sbjct:  105 VPNRPDGTIDLQAIEAAVRADDVHFPRSRLLVLENTHNRCNGSPLSADYMDRVAATADRCGLKIHVDGARLFNAAVALACPAADLVARADSVSFCLSKGLSAPVGSMVCGSREFVAEARRARKVLGGGMRQAGIIAAAGIVALTEMVDRLAEDHANARRLAEGLDGIEGLAAD 277
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BLAST of mRNA_P-wetherbeei_contig53634.1.1 vs. uniprot
Match: A0A5K8AG02_9DELT (Threonine aldolase n=2 Tax=Desulfosarcina ovata TaxID=83564 RepID=A0A5K8AG02_9DELT)

HSP 1 Score: 192 bits (488), Expect = 1.640e-57
Identity = 102/173 (58.96%), Postives = 125/173 (72.25%), Query Frame = 1 
Query:    1 IPNLPDGTVALDAVAAAVRPDDVHCPRSGLLCLENTHNGCGGVPLSPEYVGAAAAAARAADLAVHVDGARLVNAAVALGVRPAVLVAATDTVSLCLSKGLGAPVGSLLAGPADFICRARRLRKALGGGMRQAGVVAAAGLEALINNFVRTRDDHDNARALSEGLAGVSGLQVD 519
            +PN PDGT+A++ + AA+RPDDVH P S L+ LENTHN C G PLSP Y  + A  A A  L +H+DGAR+ NAA ALGV  A L A  D+++ CLSKGL APVGSLL G   FI +ARR+RK+LGGGMRQAGV+AAAG+ AL     R  +DH NARAL+ GLA + GL +D
Sbjct:  105 LPNQPDGTIAIEKIEAAIRPDDVHFPTSRLIILENTHNRCHGTPLSPAYTASVAELAAAHGLKLHIDGARIFNAAGALGVDAAELAAPADSITFCLSKGLAAPVGSLLCGDEPFIRQARRVRKSLGGGMRQAGVIAAAGIVALNEMVDRLAEDHANARALAVGLAEIPGLAID 277
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BLAST of mRNA_P-wetherbeei_contig53634.1.1 vs. uniprot
Match: A0A7V0JUS8_9BACT (Low-specificity L-threonine aldolase n=1 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A7V0JUS8_9BACT)

HSP 1 Score: 192 bits (488), Expect = 1.880e-57
Identity = 99/173 (57.23%), Postives = 126/173 (72.83%), Query Frame = 1 
Query:    1 IPNLPDGTVALDAVAAAVRPDDVHCPRSGLLCLENTHNGCGGVPLSPEYVGAAAAAARAADLAVHVDGARLVNAAVALGVRPAVLVAATDTVSLCLSKGLGAPVGSLLAGPADFICRARRLRKALGGGMRQAGVVAAAGLEALINNFVRTRDDHDNARALSEGLAGVSGLQVD 519
            +PN PDGT+ L  + AA+RP D+H PR+ L+CLENTHN C G+PL+P+Y  A    AR   LAVH+DGAR+ NAAVALGV    L A  D++S CLSKGL APVGS++ G   FI  ARR+RK +GGGMRQAGV+AAAG+ AL     R  +DH+NAR L+EG+A + GL+V+
Sbjct:  105 VPNRPDGTMDLGEIEAAIRPRDIHFPRTRLICLENTHNRCHGMPLTPDYTRAVVELARKHSLAVHLDGARIFNAAVALGVEVRELSAGVDSLSFCLSKGLAAPVGSVICGERGFIEEARRIRKMVGGGMRQAGVIAAAGIVALETMVERLAEDHENARRLAEGIAAIPGLRVE 277
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BLAST of mRNA_P-wetherbeei_contig53634.1.1 vs. uniprot
Match: A0A5K7Z0D8_9DELT (Threonine aldolase n=1 Tax=Desulfosarcina widdelii TaxID=947919 RepID=A0A5K7Z0D8_9DELT)

HSP 1 Score: 191 bits (485), Expect = 4.770e-57
Identity = 100/171 (58.48%), Postives = 121/171 (70.76%), Query Frame = 1 
Query:    7 NLPDGTVALDAVAAAVRPDDVHCPRSGLLCLENTHNGCGGVPLSPEYVGAAAAAARAADLAVHVDGARLVNAAVALGVRPAVLVAATDTVSLCLSKGLGAPVGSLLAGPADFICRARRLRKALGGGMRQAGVVAAAGLEALINNFVRTRDDHDNARALSEGLAGVSGLQVD 519
            N  DGT+ALD + AA+RPDDVH PRS L+ LENTHN C GVPL+P Y  +    A    L +H+DGAR+ NAAVALGV  A L    D+V+ CLSKGL APVGS++ G  DFI  ARR RK++GGGMRQAG++AAAG+ AL     R  +DH NARAL+ GLA   GLQ+D
Sbjct:  107 NAEDGTIALDVIEAAIRPDDVHFPRSRLIILENTHNRCNGVPLTPAYTRSVGQLAARHGLKLHIDGARIFNAAVALGVNAAELAGPADSVTFCLSKGLAAPVGSVVCGDEDFIAEARRARKSVGGGMRQAGIIAAAGIVALTEMVDRLAEDHANARALAIGLAQTPGLQID 277
[Close]
BLAST of mRNA_P-wetherbeei_contig53634.1.1 vs. uniprot
Match: A0A7C5LPJ7_9CHLR (Low-specificity L-threonine aldolase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C5LPJ7_9CHLR)

HSP 1 Score: 191 bits (484), Expect = 6.740e-57
Identity = 102/173 (58.96%), Postives = 124/173 (71.68%), Query Frame = 1 
Query:    1 IPNLPDGTVALDAVAAAVRPDDVHCPRSGLLCLENTHNGCGGVPLSPEYVGAAAAAARAADLAVHVDGARLVNAAVALGVRPAVLVAATDTVSLCLSKGLGAPVGSLLAGPADFICRARRLRKALGGGMRQAGVVAAAGLEALINNFVRTRDDHDNARALSEGLAGVSGLQVD 519
            +PNLP+G +    V AAVRPD+VH PRS ++ LENTHN CGG  LSPE   A AA A A  L +H+DGAR+ NAAVALGV  + L A  D++S CLSKGL  PVGSL+ GP +FI  ARR+RKA+GGGMRQAGV+AAAG+ AL     R  +DH NAR L E +AG+ GL +D
Sbjct:  103 VPNLPNGMLDPAEVEAAVRPDNVHYPRSRVVVLENTHNRCGGAVLSPEQTHAVAAVAHAHGLKLHLDGARIFNAAVALGVPASQLAAEADSISFCLSKGLACPVGSLICGPKEFIAEARRIRKAVGGGMRQAGVLAAAGIVALEEMIDRLAEDHANARLLGEAIAGIPGLAID 275
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53634.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X7YV19_9BACT4.160e-6461.85Low-specificity L-threonine aldolase n=1 Tax=Planc... [more]
S7TH56_DESML2.800e-5960.69Aromatic amino acid beta-eliminating lyase/threoni... [more]
A0A835ZE62_9STRA6.030e-5963.86L-allo-threonine aldolase n=1 Tax=Tribonema minus ... [more]
D8K1X7_DEHLB6.550e-5961.85Threonine aldolase n=1 Tax=Dehalogenimonas lykanth... [more]
A0A7I8MXR0_9DELT3.160e-5860.12Low-specificity L-threonine aldolase (EC) n=1 Tax=... [more]
A0A7C0Z8C2_9DELT5.670e-5860.12Low-specificity L-threonine aldolase n=1 Tax=Desul... [more]
A0A5K8AG02_9DELT1.640e-5758.96Threonine aldolase n=2 Tax=Desulfosarcina ovata Ta... [more]
A0A7V0JUS8_9BACT1.880e-5757.23Low-specificity L-threonine aldolase n=1 Tax=Candi... [more]
A0A5K7Z0D8_9DELT4.770e-5758.48Threonine aldolase n=1 Tax=Desulfosarcina widdelii... [more]
A0A7C5LPJ7_9CHLR6.740e-5758.96Low-specificity L-threonine aldolase n=1 Tax=Anaer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53634contigP-wetherbeei_contig53634:2..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1121405.dsmv_0645
Preferred nameltaA
PFAMsBeta_elim_lyase
Model size519
Max annot lvl28221|Deltaproteobacteria
KEGG rclassRC00312,RC00372
KEGG koko:K01620
KEGG ReactionR00751,R06171
KEGG Pathwayko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.59e-60
EggNOG OGsCOG2008@1|root,COG2008@2|Bacteria,1MWCR@1224|Proteobacteria,42MZS@68525|delta/epsilon subdivisions,2WIQP@28221|Deltaproteobacteria,2MHR8@213118|Desulfobacterales
EC4.1.2.48
DescriptionBeta-eliminating lyase
Cds size519
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186802.4017656-CDS-P-wetherbeei_contig53634:1..5201683186802.4017656-CDS-P-wetherbeei_contig53634:1..520Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53634 2..520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53634.1.1prot_P-wetherbeei_contig53634.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53634 2..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53634.1.1

>prot_P-wetherbeei_contig53634.1.1 ID=prot_P-wetherbeei_contig53634.1.1|Name=mRNA_P-wetherbeei_contig53634.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
IPNLPDGTVALDAVAAAVRPDDVHCPRSGLLCLENTHNGCGGVPLSPEYV
GAAAAAARAADLAVHVDGARLVNAAVALGVRPAVLVAATDTVSLCLSKGL
GAPVGSLLAGPADFICRARRLRKALGGGMRQAGVVAAAGLEALINNFVRT
RDDHDNARALSEGLAGVSGLQVD
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mRNA from alignment at P-wetherbeei_contig53634:2..520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53634.1.1 ID=mRNA_P-wetherbeei_contig53634.1.1|Name=mRNA_P-wetherbeei_contig53634.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig53634:2..520+ (Phaeothamnion wetherbeei SAG_119_79)
ATCCCGAACCTGCCGGACGGGACCGTCGCCCTCGATGCCGTCGCCGCCGC
CGTCCGGCCGGACGATGTGCACTGCCCGCGCTCTGGGCTCCTCTGCCTGG
AGAACACCCACAACGGCTGCGGCGGCGTGCCGCTCTCTCCCGAGTACGTC
GGCGCGGCGGCGGCGGCGGCGCGGGCGGCGGACCTGGCGGTGCACGTAGA
TGGCGCCAGGCTGGTCAATGCCGCGGTCGCCTTGGGTGTCCGGCCGGCCG
TGCTCGTGGCTGCCACCGATACCGTCTCCCTGTGCCTCAGCAAGGGTCTC
GGCGCACCTGTCGGCTCGCTGCTGGCAGGGCCCGCCGACTTCATTTGCCG
GGCGCGGCGGCTGCGGAAGGCGCTGGGCGGCGGCATGCGGCAGGCCGGGG
TCGTCGCCGCGGCAGGGCTCGAGGCGCTCATCAACAACTTTGTTCGGACG
CGTGACGACCACGACAATGCGCGCGCCCTGTCGGAGGGGCTGGCCGGCGT
GAGCGGGCTTCAAGTCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53634:2..520+

>mRNA_P-wetherbeei_contig53634.1.1 ID=mRNA_P-wetherbeei_contig53634.1.1|Name=mRNA_P-wetherbeei_contig53634.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig53634:2..520+ (Phaeothamnion wetherbeei SAG_119_79)
ATCCCGAACCTGCCGGACGGGACCGTCGCCCTCGATGCCGTCGCCGCCGC
CGTCCGGCCGGACGATGTGCACTGCCCGCGCTCTGGGCTCCTCTGCCTGG
AGAACACCCACAACGGCTGCGGCGGCGTGCCGCTCTCTCCCGAGTACGTC
GGCGCGGCGGCGGCGGCGGCGCGGGCGGCGGACCTGGCGGTGCACGTAGA
TGGCGCCAGGCTGGTCAATGCCGCGGTCGCCTTGGGTGTCCGGCCGGCCG
TGCTCGTGGCTGCCACCGATACCGTCTCCCTGTGCCTCAGCAAGGGTCTC
GGCGCACCTGTCGGCTCGCTGCTGGCAGGGCCCGCCGACTTCATTTGCCG
GGCGCGGCGGCTGCGGAAGGCGCTGGGCGGCGGCATGCGGCAGGCCGGGG
TCGTCGCCGCGGCAGGGCTCGAGGCGCTCATCAACAACTTTGTTCGGACG
CGTGACGACCACGACAATGCGCGCGCCCTGTCGGAGGGGCTGGCCGGCGT
GAGCGGGCTTCAAGTCGAC
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