mRNA_P-wetherbeei_contig53633.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53633.1.1
Unique NamemRNA_P-wetherbeei_contig53633.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53633.1.1 vs. uniprot
Match: A0A382UNZ7_9ZZZZ (cobW domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382UNZ7_9ZZZZ)

HSP 1 Score: 55.1 bits (131), Expect = 8.020e-7
Identity = 31/99 (31.31%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:    4 VPALLVAGIDAAQRAKALRALLSRRPPHQRWAVITSGLG-------ALELPEVSPQVETAFVAPGCLCCTGLLAFRVGLVRLLRRMAAAPPALLLIDTG 279
            VP  ++ G     +  A++++L+R+PPH+ WAV+ +  G       A+E   +S  V    +  GC+CC   +  +VG++ +LRR+   P  LL+  TG
Sbjct:    7 VPTTILTGFFGVGKTTAIKSMLTRKPPHETWAVLINEFGEVSVDQAAIEKESISDNVIIQEIPGGCMCCLMNVPMQVGILEILRRIK--PDRLLIEPTG 103
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BLAST of mRNA_P-wetherbeei_contig53633.1.1 vs. uniprot
Match: A0A2S6T7W1_9PROT (Zinc-binding GTPase YeiR n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6T7W1_9PROT)

HSP 1 Score: 55.1 bits (131), Expect = 9.760e-7
Identity = 31/99 (31.31%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:    4 VPALLVAGIDAAQRAKALRALLSRRPPHQRWAVITSGLG-------ALELPEVSPQVETAFVAPGCLCCTGLLAFRVGLVRLLRRMAAAPPALLLIDTG 279
            VP  ++ G     +  A++++L+R+PPH+ WAV+ +  G       A+E   +S  V    +  GC+CC   +  +VG++ +LRR+   P  LL+  TG
Sbjct:    7 VPTTILTGFFGVGKTTAIKSMLTRKPPHETWAVLINEFGEVSVDQAAIEKESISDNVIIQEIPGGCMCCMMNVPMQVGILEILRRIK--PDRLLIEPTG 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53633.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A382UNZ7_9ZZZZ8.020e-731.31cobW domain-containing protein (Fragment) n=1 Tax=... [more]
A0A2S6T7W1_9PROT9.760e-731.31Zinc-binding GTPase YeiR n=5 Tax=Alphaproteobacter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53633contigP-wetherbeei_contig53633:5..289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1323663.AROI01000002_gene1107
Preferred nameyeiR
PFAMsCobW_C,cobW
Model size285
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0008270,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0043167,GO:0043169,GO:0046872,GO:0046914
Exons1
Evalue9.14e-09
EggNOG OGsCOG0523@1|root,COG0523@2|Bacteria,1MVZV@1224|Proteobacteria,1RPKP@1236|Gammaproteobacteria
Descriptioncobalamin synthesis protein, P47K
Cds size285
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186802.3589652-CDS-P-wetherbeei_contig53633:4..2891683186802.3589652-CDS-P-wetherbeei_contig53633:4..289Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53633 5..289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53633.1.1prot_P-wetherbeei_contig53633.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53633 5..289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53633.1.1

>prot_P-wetherbeei_contig53633.1.1 ID=prot_P-wetherbeei_contig53633.1.1|Name=mRNA_P-wetherbeei_contig53633.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
PVPALLVAGIDAAQRAKALRALLSRRPPHQRWAVITSGLGALELPEVSPQ
VETAFVAPGCLCCTGLLAFRVGLVRLLRRMAAAPPALLLIDTGAS
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mRNA from alignment at P-wetherbeei_contig53633:5..289+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53633.1.1 ID=mRNA_P-wetherbeei_contig53633.1.1|Name=mRNA_P-wetherbeei_contig53633.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig53633:5..289+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGTACCCGCATTGCTGGTCGCGGGCATCGACGCGGCGCAACGGGCGAA
GGCACTGCGCGCATTGTTGTCCCGGCGTCCTCCGCATCAAAGATGGGCGG
TGATCACGTCGGGCTTGGGGGCGCTTGAATTGCCGGAAGTGTCACCCCAG
GTCGAAACCGCATTTGTCGCGCCGGGCTGCCTGTGCTGCACCGGCCTTTT
GGCCTTCCGGGTGGGTCTCGTGCGTCTGCTGCGCCGGATGGCTGCCGCGC
CACCGGCCTTGTTGCTTATTGATACCGGCGCGTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53633:5..289+

>mRNA_P-wetherbeei_contig53633.1.1 ID=mRNA_P-wetherbeei_contig53633.1.1|Name=mRNA_P-wetherbeei_contig53633.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig53633:5..289+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGTACCCGCATTGCTGGTCGCGGGCATCGACGCGGCGCAACGGGCGAA
GGCACTGCGCGCATTGTTGTCCCGGCGTCCTCCGCATCAAAGATGGGCGG
TGATCACGTCGGGCTTGGGGGCGCTTGAATTGCCGGAAGTGTCACCCCAG
GTCGAAACCGCATTTGTCGCGCCGGGCTGCCTGTGCTGCACCGGCCTTTT
GGCCTTCCGGGTGGGTCTCGTGCGTCTGCTGCGCCGGATGGCTGCCGCGC
CACCGGCCTTGTTGCTTATTGATACCGGCGCGTCC
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