mRNA_P-wetherbeei_contig5363.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5363.1.1
Unique NamemRNA_P-wetherbeei_contig5363.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5363.1.1 vs. uniprot
Match: K3WMW9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMW9_GLOUD)

HSP 1 Score: 96.7 bits (239), Expect = 1.160e-20
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 2 
Query:  695 SKWQEDEDERLRAAVTRNGSKNWKQIAKEVGSNRSDVQCLHRWDKVLKPGLHKGLWTPEEDERLL 889
            SKW  +EDERLR AV R G K+WK IA+ +G+ R+DVQCLHRW+KVLKPGL KG WTPEED  LL
Sbjct:   10 SKWLREEDERLRDAVARFGGKSWKLIAESLGNGRTDVQCLHRWNKVLKPGLIKGPWTPEEDTILL 74
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BLAST of mRNA_P-wetherbeei_contig5363.1.1 vs. uniprot
Match: G5A242_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A242_PHYSP)

HSP 1 Score: 99.0 bits (245), Expect = 1.400e-19
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 2 
Query:  695 SKWQEDEDERLRAAVTRNGSKNWKQIAKEVGSNRSDVQCLHRWDKVLKPGLHKGLWTPEEDERL 886
            +KW  DEDERLR AV R G KNWK IA+ +G+ R+DVQCLHRW+KVLKPGL KG WTPEED  L
Sbjct:  377 TKWLRDEDERLRVAVARFGGKNWKMIAETLGNGRTDVQCLHRWNKVLKPGLIKGPWTPEEDRIL 440
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BLAST of mRNA_P-wetherbeei_contig5363.1.1 vs. uniprot
Match: D0NCZ4_PHYIT (Myb-like DNA-binding protein, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NCZ4_PHYIT)

HSP 1 Score: 99.0 bits (245), Expect = 1.410e-19
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 2 
Query:  695 SKWQEDEDERLRAAVTRNGSKNWKQIAKEVGSNRSDVQCLHRWDKVLKPGLHKGLWTPEEDERL 886
            +KW  DEDERLR AV R G KNWK IA+ +G+ R+DVQCLHRW+KVLKPGL KG WTPEED  L
Sbjct:  379 TKWLRDEDERLRVAVARFGGKNWKMIAETLGNGRTDVQCLHRWNKVLKPGLIKGPWTPEEDRIL 442
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BLAST of mRNA_P-wetherbeei_contig5363.1.1 vs. uniprot
Match: A0A3F2S072_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S072_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.890e-19
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 2 
Query:  695 SKWQEDEDERLRAAVTRNGSKNWKQIAKEVGSNRSDVQCLHRWDKVLKPGLHKGLWTPEEDERL 886
            +KW  DEDERLR AV R G KNWK IA+ +G+ R+DVQCLHRW+KVLKPGL KG WTPEED  L
Sbjct:  480 TKWLRDEDERLRVAVARFGGKNWKMIAETLGNGRTDVQCLHRWNKVLKPGLIKGPWTPEEDRVL 543
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BLAST of mRNA_P-wetherbeei_contig5363.1.1 vs. uniprot
Match: A0A484DU86_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DU86_BRELC)

HSP 1 Score: 99.0 bits (245), Expect = 2.000e-19
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 2 
Query:  695 SKWQEDEDERLRAAVTRNGSKNWKQIAKEVGSNRSDVQCLHRWDKVLKPGLHKGLWTPEEDERL 886
            +KW  DEDERLR AV R G KNWK IA+ +G+ R+DVQCLHRW+KVLKPGL KG WTPEED  L
Sbjct:  352 TKWLRDEDERLRLAVARFGGKNWKMIAESLGNGRTDVQCLHRWNKVLKPGLIKGPWTPEEDRIL 415
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BLAST of mRNA_P-wetherbeei_contig5363.1.1 vs. uniprot
Match: A0A0P1AL10_PLAHL (Transcriptional activator myb-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AL10_PLAHL)

HSP 1 Score: 99.0 bits (245), Expect = 2.020e-19
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 2 
Query:  695 SKWQEDEDERLRAAVTRNGSKNWKQIAKEVGSNRSDVQCLHRWDKVLKPGLHKGLWTPEEDERL 886
            +KW  DEDERLR AV R G KNWK IA+ +G+ R+DVQCLHRW+KVLKPGL KG WTPEED  L
Sbjct:  367 TKWLRDEDERLRVAVARFGGKNWKMIAETLGNGRTDVQCLHRWNKVLKPGLIKGPWTPEEDRIL 430
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BLAST of mRNA_P-wetherbeei_contig5363.1.1 vs. uniprot
Match: A0A833T2N2_PHYIN (Myb-like DNA-binding domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T2N2_PHYIN)

HSP 1 Score: 99.0 bits (245), Expect = 2.040e-19
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 2 
Query:  695 SKWQEDEDERLRAAVTRNGSKNWKQIAKEVGSNRSDVQCLHRWDKVLKPGLHKGLWTPEEDERL 886
            +KW  DEDERLR AV R G KNWK IA+ +G+ R+DVQCLHRW+KVLKPGL KG WTPEED  L
Sbjct:  381 TKWLRDEDERLRVAVARFGGKNWKMIAETLGNGRTDVQCLHRWNKVLKPGLIKGPWTPEEDRIL 444
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BLAST of mRNA_P-wetherbeei_contig5363.1.1 vs. uniprot
Match: W2FLC4_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2FLC4_PHYPR)

HSP 1 Score: 99.0 bits (245), Expect = 2.040e-19
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 2 
Query:  695 SKWQEDEDERLRAAVTRNGSKNWKQIAKEVGSNRSDVQCLHRWDKVLKPGLHKGLWTPEEDERL 886
            +KW  DEDERLR AV R G KNWK IA+ +G+ R+DVQCLHRW+KVLKPGL KG WTPEED  L
Sbjct:  387 TKWLRDEDERLRVAVARFGGKNWKMIAETLGNGRTDVQCLHRWNKVLKPGLIKGPWTPEEDRIL 450
[Close]
BLAST of mRNA_P-wetherbeei_contig5363.1.1 vs. uniprot
Match: A0A329T0H2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T0H2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.040e-19
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 2 
Query:  695 SKWQEDEDERLRAAVTRNGSKNWKQIAKEVGSNRSDVQCLHRWDKVLKPGLHKGLWTPEEDERL 886
            +KW  DEDERLR AV R G KNWK IA+ +G+ R+DVQCLHRW+KVLKPGL KG WTPEED  L
Sbjct:  381 TKWLRDEDERLRVAVARFGGKNWKMIAETLGNGRTDVQCLHRWNKVLKPGLIKGPWTPEEDRIL 444
[Close]
BLAST of mRNA_P-wetherbeei_contig5363.1.1 vs. uniprot
Match: A0A6A3FAN3_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FAN3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.050e-19
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 2 
Query:  695 SKWQEDEDERLRAAVTRNGSKNWKQIAKEVGSNRSDVQCLHRWDKVLKPGLHKGLWTPEEDERL 886
            +KW  DEDERLR AV R G KNWK IA+ +G+ R+DVQCLHRW+KVLKPGL KG WTPEED  L
Sbjct:  379 TKWLRDEDERLRVAVARFGGKNWKMIAETLGNGRTDVQCLHRWNKVLKPGLIKGPWTPEEDRIL 442
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5363.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K3WMW9_GLOUD1.160e-2069.23Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
G5A242_PHYSP1.400e-1970.31Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
D0NCZ4_PHYIT1.410e-1970.31Myb-like DNA-binding protein, putative n=1 Tax=Phy... [more]
A0A3F2S072_9STRA1.890e-1970.31Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A484DU86_BRELC2.000e-1970.31Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A0P1AL10_PLAHL2.020e-1970.31Transcriptional activator myb-like n=1 Tax=Plasmop... [more]
A0A833T2N2_PHYIN2.040e-1970.31Myb-like DNA-binding domain n=1 Tax=Phytophthora i... [more]
W2FLC4_PHYPR2.040e-1970.31Uncharacterized protein n=6 Tax=Phytophthora paras... [more]
A0A329T0H2_9STRA2.040e-1970.31Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A6A3FAN3_9STRA2.050e-1970.31Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5363contigP-wetherbeei_contig5363:272..1847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog42099.EPrPV00000020307
PFAMsMyb_DNA-binding
Model size903
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.33e-21
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,1MEAN@121069|Pythiales
DescriptionMyb-like DNA-binding domain
Cds size801
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186802.29804-CDS-P-wetherbeei_contig5363:271..3431683186802.29804-CDS-P-wetherbeei_contig5363:271..343Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5363 272..343 -
1683186802.3085022-CDS-P-wetherbeei_contig5363:702..8241683186802.3085022-CDS-P-wetherbeei_contig5363:702..824Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5363 703..824 -
1683186802.317863-CDS-P-wetherbeei_contig5363:1140..17471683186802.317863-CDS-P-wetherbeei_contig5363:1140..1747Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5363 1141..1747 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186802.327918-UTR-P-wetherbeei_contig5363:1747..18471683186802.327918-UTR-P-wetherbeei_contig5363:1747..1847Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5363 1748..1847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5363.1.1prot_P-wetherbeei_contig5363.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5363 272..1747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5363.1.1

>prot_P-wetherbeei_contig5363.1.1 ID=prot_P-wetherbeei_contig5363.1.1|Name=mRNA_P-wetherbeei_contig5363.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=267bp
MEDRPSLLGRAESRFSSLKRGEATSEMMDREGEVVSVSPRRPATKRSTAE
NGGGAQGHGPSGRVLRGGVIAGPDTSVGLRIFAPATHPSKRIDARLSPNA
SSARRALRASSCRGQGGQEDELSSSQSARGTEHNDAASNGRVLRRIQRGL
RGDTSGDGHGGALASEQSHFEAAARVLHTKSDHSQQEHQQQQQQQMPRSK
WQEDEDERLRAAVTRNGSKNWKQIAKEVGSNRSDVQCLHRWDKVLKPGLH
KGLWTPEEDERLLRYMQ
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mRNA from alignment at P-wetherbeei_contig5363:272..1847-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5363.1.1 ID=mRNA_P-wetherbeei_contig5363.1.1|Name=mRNA_P-wetherbeei_contig5363.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1576bp|location=Sequence derived from alignment at P-wetherbeei_contig5363:272..1847- (Phaeothamnion wetherbeei SAG_119_79)
AAAGTGTTCTTCCAACGTAAGTTTGCGCGTGCGCACCGGAACTTCCCGTC
TCCCCAACGCCCGTCGATCGTAAAGGCACGATAAGGGGAGATAAAAAGCG
ATGGAAGACCGACCTTCACTGCTGGGGCGAGCTGAATCGCGTTTCTCGTC
TCTCAAGAGGGGCGAAGCAACCAGCGAGATGATGGATCGCGAAGGCGAAG
TTGTATCAGTTTCACCTCGTCGACCGGCAACGAAGCGCAGCACTGCAGAG
AATGGAGGAGGCGCCCAGGGCCATGGCCCTTCGGGTCGAGTGCTTCGCGG
GGGCGTGATCGCGGGACCTGATACTTCCGTTGGGCTCCGCATCTTCGCTC
CTGCCACCCACCCATCGAAGCGCATCGATGCTCGCCTCTCGCCCAATGCC
TCATCAGCTCGTCGAGCACTGCGCGCTTCGAGCTGCCGCGGCCAAGGTGG
CCAGGAGGACGAACTTTCCTCGTCACAGTCTGCACGAGGCACGGAACACA
ACGATGCAGCGTCCAACGGCCGCGTGCTCCGGCGTATCCAGCGAGGTCTC
CGCGGCGACACCAGCGGGGATGGTCACGGCGGGGCGCTTGCCTCGGAGCA
GAGCCACTTTGAGGCGGCTGCCCGTGTCCTACACACGAAGAGCGACCACT
CCCAGCAGGAGCATCAGCAACAGCAGCAGCAACAGATGCCTCGCAGCAAG
TGGCAAGGTAAGAAGAGCCTCCTTCCTCTTCTCTTCTCCTCTCAGCTGCC
TCATTTCCTTTCGCATGAGGACGGCTGTCATTACCACCGAATGCCGCCGA
CACCGCCGCTGCTGCCAATGCTGTCGCCGGTGCTGTGTTCTTTGTTGGGT
GGAATCTCTTGGAATGCGTACCGCGTGCCTCAAAAGCCGTTCTGCTGCTC
TTCCTTCGCGTGACGGCTTCCAAAAGCACAGCGAAACTCCGTACTCGGCC
CTGGGCTGCATCCCAGCAACCCTTGGGCTCACTCCTCCTTTTCTATTCTT
CTTTTTTGCCCACCTGCTCGCAGAGGACGAGGATGAGCGGCTGCGCGCGG
CTGTTACGCGAAACGGCTCGAAGAACTGGAAGCAGATTGCCAAGGAAGTC
GGCAGCAACCGCAGCGACGTGCAGTGCCTCCACCGCTGGGACAAGGTACC
TCCCATCCGCCCGCCTGTTTCGGCCAGTTTTGAGCCGTTTCGGGCCGTTA
TGGGGCCTCTGGTTTGAGAAGCTGCTGGGCGCGTTCTGCCGCCTGCTGGG
TTTGAGAAACTGTTGTGATGGGGAGTTGTCTGTCCGACGGACGGTTGAGA
AAGGTATCTAAAGGCAGCCAAATCCCTTGCTGCTCCCGTCCTAGCCTCTT
TGTTGCAGATCTTCCCGCACCTGTCAAAGCATCCGCACTTTCGCTTCGCC
CTTCGCTCAGGCCAACACCACGCGTCCTGGCCATGTTTTGCCTCGTCGCC
TCTGCAGCCGTCGCGTATCTGCTCTGCTCAACAAATCACTTCTTGCCTTT
GCAGGTGCTCAAGCCGGGGCTGCACAAGGGTTTGTGGACGCCTGAGGAGG
ACGAGCGGCTGCTGCGCTACATGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5363:272..1847-

>mRNA_P-wetherbeei_contig5363.1.1 ID=mRNA_P-wetherbeei_contig5363.1.1|Name=mRNA_P-wetherbeei_contig5363.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig5363:272..1847- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGACCGACCTTCACTGCTGGGGCGAGCTGAATCGCGTTTCTCGTC
TCTCAAGAGGGGCGAAGCAACCAGCGAGATGATGGATCGCGAAGGCGAAG
TTGTATCAGTTTCACCTCGTCGACCGGCAACGAAGCGCAGCACTGCAGAG
AATGGAGGAGGCGCCCAGGGCCATGGCCCTTCGGGTCGAGTGCTTCGCGG
GGGCGTGATCGCGGGACCTGATACTTCCGTTGGGCTCCGCATCTTCGCTC
CTGCCACCCACCCATCGAAGCGCATCGATGCTCGCCTCTCGCCCAATGCC
TCATCAGCTCGTCGAGCACTGCGCGCTTCGAGCTGCCGCGGCCAAGGTGG
CCAGGAGGACGAACTTTCCTCGTCACAGTCTGCACGAGGCACGGAACACA
ACGATGCAGCGTCCAACGGCCGCGTGCTCCGGCGTATCCAGCGAGGTCTC
CGCGGCGACACCAGCGGGGATGGTCACGGCGGGGCGCTTGCCTCGGAGCA
GAGCCACTTTGAGGCGGCTGCCCGTGTCCTACACACGAAGAGCGACCACT
CCCAGCAGGAGCATCAGCAACAGCAGCAGCAACAGATGCCTCGCAGCAAG
TGGCAAGAGGACGAGGATGAGCGGCTGCGCGCGGCTGTTACGCGAAACGG
CTCGAAGAACTGGAAGCAGATTGCCAAGGAAGTCGGCAGCAACCGCAGCG
ACGTGCAGTGCCTCCACCGCTGGGACAAGGTGCTCAAGCCGGGGCTGCAC
AAGGGTTTGTGGACGCCTGAGGAGGACGAGCGGCTGCTGCGCTACATGCA
G
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