mRNA_P-wetherbeei_contig53609.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53609.1.1
Unique NamemRNA_P-wetherbeei_contig53609.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53609.1.1 vs. uniprot
Match: A0A544VWQ7_9MYCO (Chitin-binding protein n=3 Tax=Mycobacteriaceae TaxID=1762 RepID=A0A544VWQ7_9MYCO)

HSP 1 Score: 98.2 bits (243), Expect = 2.630e-22
Identity = 136/177 (76.84%), Postives = 139/177 (78.53%), Query Frame = 1 
Query:    1 MNLKKTVAGVTFAGGLGLALIAGSSGVALAAPGGGGG-CQPPFCAGGPGPGXXXXXXXXXXXXXXXXXXXXXXXXXXDFRGXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------GGPGGPGDFXXXXXXXXXXXXXXXDG--------RDWGPRPPDAFNGFRDAPWGGG 468
            MNLKK VAGVTFAGG+GLALI+GSSGVA AAPGGGGG CQPPFCAGGPGPG XX XXXXXXXXXXXXXXXXXXXXX DFR XXXXXXXXXXXXXXXXXXXXXXXXXXXX            GG GG GD XXXXXXX    XXXX           DWGPRPPDAF G+RDAPWGGG
Sbjct:    1 MNLKKAVAGVTFAGGIGLALISGSSGVAFAAPGGGGGGCQPPFCAGGPGPGGXXPXXXXXXXXXXXXXXXXXXXXXADFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGXGGXGDXXXXXXXXGPDFXXXXXXXXXXXXXXHDWGPRPPDAFGGWRDAPWGGG 177
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BLAST of mRNA_P-wetherbeei_contig53609.1.1 vs. uniprot
Match: A0A502EAA5_9MYCO (Chitin-binding protein n=1 Tax=Mycobacterium hodleri TaxID=49897 RepID=A0A502EAA5_9MYCO)

HSP 1 Score: 92.0 bits (227), Expect = 3.100e-20
Identity = 119/165 (72.12%), Postives = 121/165 (73.33%), Query Frame = 1 
Query:    1 MNLKKTVAGVTFAGGLGLALIAGSSGVALAAPGGGGGCQPPFCAGGPGPGXXXXXXXXXXXXXXXXXXXXXXXXXXDFRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPGGPGDFXXXXXXXXXXXXXXX---------DGRDWGPRPPDAFNGFRDAPWGGG 468
            MNLKK VAGVTFAGG+GLALI GSSGVALAAPGGGG CQPPFCAGGP                    XXXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXX XXXG   GPG  XXXXXXXXXXXXXXX         DG DWGPRPPDAF GFR+APWGGG
Sbjct:    1 MNLKKAVAGVTFAGGIGLALITGSSGVALAAPGGGGNCQPPFCAGGP--------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLXXXGNDRGPGXXXXXXXXXXXXXXXXXXXXXXXXXXDGHDWGPRPPDAFGGFRNAPWGGG 145
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BLAST of mRNA_P-wetherbeei_contig53609.1.1 vs. uniprot
Match: A0A7I7XHB2_9MYCO (Uncharacterized protein n=1 Tax=Mycolicibacterium madagascariense TaxID=212765 RepID=A0A7I7XHB2_9MYCO)

HSP 1 Score: 87.4 bits (215), Expect = 4.350e-18
Identity = 111/213 (52.11%), Postives = 114/213 (53.52%), Query Frame = 1 
Query:    1 MNLKKTVAGVTFAGGLGLALIAGSSGVALAAPGGGGGCQPPFCAGGPGPGXXXXXXXXXXXXXXXXXXXXXXXXXXDFRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPGGPGDFXXXXXXXXXXXXXXX---------------------------------------------------------DGRDWGPRPPDAFNGFRDAPWGGG 468
            MN KK VAG TFAG +GL L+AGSSGVALAAPGGGGGCQPPFCAGGPGPGXXXXXXXXX     XXXXXXXXXXXX    XXXX                        GGPGGPGDF XXXXXXXXXXXXXX                                                         DG DWGPRPPDAF+GFR APWG G
Sbjct:    1 MNFKKAVAGATFAGAIGLTLVAGSSGVALAAPGGGGGCQPPFCAGGPGPGXXXXXXXXXGGPQAXXXXXXXXXXXXXXXXXXXX------------------------GGPGGPGDFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTRGPDGHDWGPRPPDAFSGFRGAPWGDG 189
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BLAST of mRNA_P-wetherbeei_contig53609.1.1 vs. uniprot
Match: A0A7I7QQG2_9MYCO (Uncharacterized protein n=3 Tax=Mycobacteriaceae TaxID=1762 RepID=A0A7I7QQG2_9MYCO)

HSP 1 Score: 78.2 bits (191), Expect = 7.140e-15
Identity = 119/157 (75.80%), Postives = 124/157 (78.98%), Query Frame = 1 
Query:    1 MNLKKTVAGVTFAGGLGLALIAGSSGVALAAPGGGGGCQPPFCAGGPGPGXXXXXXXXXXXXXXXXXXXXXXXXXX-DFRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPGGPGDFXXXXXXXXXXXXXXXDGRDWGPRPPDAFNGFRDAPWGGG 468
            MNLKK VAG TFAGG+GLALIAG++      PGGGGGCQPPFCAGGPGPGXXXXXXXXXXXXXXXXXXXXXXXXXX DFRG      XXXXXXXXXXXXXXXX       G GG G  XXXXXXXXXXXXXXX       RPPDAF+G+RDAPWGGG
Sbjct:    3 MNLKKAVAGATFAGGIGLALIAGNAXXXXXXPGGGGGCQPPFCAGGPGPGXXXXXXXXXXXXXXXXXXXXXXXXXXXDFRGPGGPDRXXXXXXXXXXXXXXXXFR-----GXGGXGXXXXXXXXXXXXXXXXXXXXX---RPPDAFSGWRDAPWGGG 151
[Close]
BLAST of mRNA_P-wetherbeei_contig53609.1.1 vs. uniprot
Match: A0A7I7RZ77_9MYCO (Uncharacterized protein n=2 Tax=Mycolicibacterium TaxID=1866885 RepID=A0A7I7RZ77_9MYCO)

HSP 1 Score: 72.8 bits (177), Expect = 8.420e-13
Identity = 112/157 (71.34%), Postives = 116/157 (73.89%), Query Frame = 1 
Query:    1 MNLKKTVAGVTFAGGLGLALIAGSSGVALAAPGGGGGCQPPFCAGGPGPGXXXXXXXXXXXXXXXXXXXXXXXXXXDFRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPGGPGDFXXXXXXXXXXXXXXXDG-RDWGPRPPDAFNGFRDAPWGGG 468
            MNLKK VAGV  AGG+GLA IAGSSGVAL       GCQPP CAGGPGPGXXXXXXXXXXXXXXXXXXXXX     DFRG  XX     XXXXXXXXXXXXX  XXXX         XXXXX   XXXXXXX   RDWGPRPP+AF+G+RDAPWGGG
Sbjct:    1 MNLKKAVAGVALAGGMGLASIAGSSGVALXXXXXXXGCQPPVCAGGPGPGXXXXXXXXXXXXXXXXXXXXX-----DFRGPGXXGNGPGXXXXXXXXXXXXXVRXXXXXXXXXXXXXXXXXXEGRXXXXXXXXXXRDWGPRPPNAFSGWRDAPWGGG 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53609.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A544VWQ7_9MYCO2.630e-2276.84Chitin-binding protein n=3 Tax=Mycobacteriaceae Ta... [more]
A0A502EAA5_9MYCO3.100e-2072.12Chitin-binding protein n=1 Tax=Mycobacterium hodle... [more]
A0A7I7XHB2_9MYCO4.350e-1852.11Uncharacterized protein n=1 Tax=Mycolicibacterium ... [more]
A0A7I7QQG2_9MYCO7.140e-1575.80Uncharacterized protein n=3 Tax=Mycobacteriaceae T... [more]
A0A7I7RZ77_9MYCO8.420e-1371.34Uncharacterized protein n=2 Tax=Mycolicibacterium ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53609contigP-wetherbeei_contig53609:2..469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size468
Hectar predicted targeting categorysignal peptide
Exons1
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.940692-CDS-P-wetherbeei_contig53609:1..4691683186801.940692-CDS-P-wetherbeei_contig53609:1..469Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53609 2..469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53609.1.1prot_P-wetherbeei_contig53609.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53609 2..469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53609.1.1

>prot_P-wetherbeei_contig53609.1.1 ID=prot_P-wetherbeei_contig53609.1.1|Name=mRNA_P-wetherbeei_contig53609.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
MNLKKTVAGVTFAGGLGLALIAGSSGVALAAPGGGGGCQPPFCAGGPGPG
GPGGGPGGPGGGPQAPRGPGGPGGPGDFRGPGGPGGDRGPGGPGDFRGPG
GPGDGRGPGGPGGPGDFRGPGDGRGPGDDRGPDGRDWGPRPPDAFNGFRD
APWGGG
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mRNA from alignment at P-wetherbeei_contig53609:2..469-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53609.1.1 ID=mRNA_P-wetherbeei_contig53609.1.1|Name=mRNA_P-wetherbeei_contig53609.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig53609:2..469- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCTGAAGAAAACCGTCGCGGGAGTGACCTTCGCGGGCGGGCTTGG
GCTGGCGTTGATCGCCGGCAGTTCGGGCGTCGCGCTCGCGGCACCTGGCG
GTGGCGGCGGTTGCCAGCCACCGTTCTGTGCAGGTGGACCTGGGCCGGGA
GGCCCAGGTGGCGGCCCGGGTGGTCCCGGTGGCGGGCCGCAGGCGCCTCG
CGGGCCAGGCGGCCCGGGTGGTCCGGGCGACTTCCGCGGGCCCGGTGGCC
CTGGCGGTGACCGTGGGCCTGGTGGACCTGGTGACTTCCGCGGACCTGGC
GGTCCCGGTGACGGTCGCGGGCCCGGTGGACCTGGCGGCCCCGGTGACTT
CCGTGGTCCTGGTGACGGTCGCGGGCCCGGTGACGATCGGGGGCCGGACG
GTCGCGACTGGGGCCCACGTCCCCCGGACGCCTTCAATGGCTTCCGCGAC
GCGCCGTGGGGCGGCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53609:2..469-

>mRNA_P-wetherbeei_contig53609.1.1 ID=mRNA_P-wetherbeei_contig53609.1.1|Name=mRNA_P-wetherbeei_contig53609.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig53609:2..469- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCTGAAGAAAACCGTCGCGGGAGTGACCTTCGCGGGCGGGCTTGG
GCTGGCGTTGATCGCCGGCAGTTCGGGCGTCGCGCTCGCGGCACCTGGCG
GTGGCGGCGGTTGCCAGCCACCGTTCTGTGCAGGTGGACCTGGGCCGGGA
GGCCCAGGTGGCGGCCCGGGTGGTCCCGGTGGCGGGCCGCAGGCGCCTCG
CGGGCCAGGCGGCCCGGGTGGTCCGGGCGACTTCCGCGGGCCCGGTGGCC
CTGGCGGTGACCGTGGGCCTGGTGGACCTGGTGACTTCCGCGGACCTGGC
GGTCCCGGTGACGGTCGCGGGCCCGGTGGACCTGGCGGCCCCGGTGACTT
CCGTGGTCCTGGTGACGGTCGCGGGCCCGGTGACGATCGGGGGCCGGACG
GTCGCGACTGGGGCCCACGTCCCCCGGACGCCTTCAATGGCTTCCGCGAC
GCGCCGTGGGGCGGCGGG
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