mRNA_P-wetherbeei_contig53606.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53606.1.1
Unique NamemRNA_P-wetherbeei_contig53606.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53606.1.1 vs. uniprot
Match: A0A1M5D0Y5_9HYPH (Uncharacterized protein n=2 Tax=Kaistia TaxID=166953 RepID=A0A1M5D0Y5_9HYPH)

HSP 1 Score: 50.4 bits (119), Expect = 9.250e-6
Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:   37 RTRVSRRQRALVRQFAAELGGDLSPTEA--SLVQQAAALVVQAEGLQRAMRKGEPVSVDDMVRASGETRRTLSALK 258
            R+  +RR R L+++F  ELGG+   TE   +LV+QAAA+ V+AE +Q A+ +G+PV  + +VR +    R ++ LK
Sbjct:   32 RSASARRYRDLMKEFTGELGGEGIMTEPMRALVRQAAAVTVEAEKMQAAIVRGDPVDTEQLVRVTNTLARLMNLLK 107
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53606.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1M5D0Y5_9HYPH9.250e-640.79Uncharacterized protein n=2 Tax=Kaistia TaxID=1669... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53606contigP-wetherbeei_contig53606:257..532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog443598.AUFA01000026_gene1682
Model size276
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.81e-07
EggNOG OGs2AR8R@1|root,31GIJ@2|Bacteria,1QE8Y@1224|Proteobacteria,2V5SU@28211|Alphaproteobacteria,3K1WT@41294|Bradyrhizobiaceae
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.9120293-CDS-P-wetherbeei_contig53606:256..5321683186801.9120293-CDS-P-wetherbeei_contig53606:256..532Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53606 257..532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53606.1.1prot_P-wetherbeei_contig53606.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53606 257..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53606.1.1

>prot_P-wetherbeei_contig53606.1.1 ID=prot_P-wetherbeei_contig53606.1.1|Name=mRNA_P-wetherbeei_contig53606.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
MLQNLPPVNRPRRTRVSRRQRALVRQFAAELGGDLSPTEASLVQQAAALV
VQAEGLQRAMRKGEPVSVDDMVRASGETRRTLSALKRERARR
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mRNA from alignment at P-wetherbeei_contig53606:257..532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53606.1.1 ID=mRNA_P-wetherbeei_contig53606.1.1|Name=mRNA_P-wetherbeei_contig53606.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig53606:257..532+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGCAGAACTTACCCCCTGTTAATCGACCACGTCGCACACGCGTATC
GCGGCGGCAGCGCGCCCTTGTGCGCCAGTTCGCGGCCGAACTTGGTGGCG
ACCTCTCGCCAACCGAAGCCTCATTAGTCCAGCAGGCCGCCGCCTTGGTC
GTGCAAGCCGAAGGCCTTCAACGAGCGATGCGTAAGGGCGAGCCTGTCAG
TGTTGACGACATGGTGCGCGCCAGTGGGGAGACCCGCAGGACCTTGTCCG
CGTTGAAGCGGGAACGCGCTCGACGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53606:257..532+

>mRNA_P-wetherbeei_contig53606.1.1 ID=mRNA_P-wetherbeei_contig53606.1.1|Name=mRNA_P-wetherbeei_contig53606.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig53606:257..532+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGCAGAACTTACCCCCTGTTAATCGACCACGTCGCACACGCGTATC
GCGGCGGCAGCGCGCCCTTGTGCGCCAGTTCGCGGCCGAACTTGGTGGCG
ACCTCTCGCCAACCGAAGCCTCATTAGTCCAGCAGGCCGCCGCCTTGGTC
GTGCAAGCCGAAGGCCTTCAACGAGCGATGCGTAAGGGCGAGCCTGTCAG
TGTTGACGACATGGTGCGCGCCAGTGGGGAGACCCGCAGGACCTTGTCCG
CGTTGAAGCGGGAACGCGCTCGACGA
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