mRNA_P-wetherbeei_contig5360.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5360.2.1
Unique NamemRNA_P-wetherbeei_contig5360.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5360.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5360contigP-wetherbeei_contig5360:1296..2464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size647
Hectar predicted targeting categoryother localisation
Exons3
Cds size573
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.673532-CDS-P-wetherbeei_contig5360:1295..15381683186801.673532-CDS-P-wetherbeei_contig5360:1295..1538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5360 1296..1538 +
1683186801.690439-CDS-P-wetherbeei_contig5360:1811..19191683186801.690439-CDS-P-wetherbeei_contig5360:1811..1919Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5360 1812..1919 +
1683186801.7033436-CDS-P-wetherbeei_contig5360:2170..23921683186801.7033436-CDS-P-wetherbeei_contig5360:2170..2392Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5360 2171..2392 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.7186003-UTR-P-wetherbeei_contig5360:2392..24641683186801.7186003-UTR-P-wetherbeei_contig5360:2392..2464Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5360 2393..2464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5360.2.1prot_P-wetherbeei_contig5360.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5360 1296..2392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5360.2.1

>prot_P-wetherbeei_contig5360.2.1 ID=prot_P-wetherbeei_contig5360.2.1|Name=mRNA_P-wetherbeei_contig5360.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=191bp
SSFATLGSSGDGGGDDGFGGRSTLSGPEGGAVSAIPAVAAGAGVASGTPG
GVEFVEDLEKVHGNLRDIFSRLLSSKKHRGRSGGESGDAYSSPRHRNHHT
SYGDADAEVLRGLLDEKEEELRQTHDALFAAHDELEAAREEAELLSCDNR
QLHAEKRQLDGEVARLTSVLAAREAELCELKGLQPDEETF*
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mRNA from alignment at P-wetherbeei_contig5360:1296..2464+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5360.2.1 ID=mRNA_P-wetherbeei_contig5360.2.1|Name=mRNA_P-wetherbeei_contig5360.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1169bp|location=Sequence derived from alignment at P-wetherbeei_contig5360:1296..2464+ (Phaeothamnion wetherbeei SAG_119_79)
TCCTCCTTTGCGACGCTGGGCAGCAGCGGCGACGGCGGCGGTGACGATGG
CTTCGGCGGCAGAAGCACCCTCTCTGGGCCCGAAGGCGGCGCCGTTTCTG
CCATCCCGGCGGTGGCGGCGGGAGCGGGAGTGGCGTCGGGAACGCCGGGG
GGCGTCGAATTCGTAGAGGACCTGGAAAAAGTCCATGGGAACCTGCGGGA
CATCTTCTCGCGCCTGCTGAGCAGCAAAAAGCACCGGGGACGAGTGAGTT
CCTTCCCTCTGTCCGGTGCTTCCCCGTCTCGGCTGCTGGAACAGGTTGTT
CATTCGCTTATTCGCTCGTGTCCATGCCGGCCAGATAGCTCGCTTGGCTG
GCCGTATCATGCGCGACTGTTTCAGATAGTATTTCTGCGTCCTGCAACCG
CCTTATAAAGAGCCCCATCAACTTTTCCGAGTTGTTCAATGTCATTTTCA
CCATCGTTCTCATCCGCTCTCGCTGCCATCCTGCCGTCCTGGTGGCCGGG
CCGCATGTTCGGGCAGTCCGGTGGCGAGTCGGGCGACGCGTATTCATCGC
CGCGGCACCGGAACCACCACACGTCCTACGGAGACGCCGACGCCGAGGTG
CTTCGCGGGCTGCTCGACGAAAAGGTAAGCGATGGAGGGAGGGAAAGCTG
CCCGCTGTTTTTTGGGGCAAGCGCTGACCGGTGCCGCTGGTGCCGCTGCC
CTCGTCCTGTCTGGTCTGGATGTACGGTATCCGTCGCCGCATGGTACGTC
TGCGACGGAGACAAAGCTGGCTGTCCCTGTCGTTCTCGCTTCCTTTTTCG
CATGAGGCATCTCACAAGTTCTCGCATACGCCTTCTCTCGATCTTTCTTT
GCACTCTTAAAAACAAAAAAAACAGGAGGAGGAGCTGCGGCAGACGCACG
ACGCGCTGTTCGCGGCCCACGATGAGCTCGAGGCGGCCCGCGAGGAGGCC
GAGCTGCTGTCGTGCGACAATCGCCAGCTGCACGCCGAAAAGCGTCAGCT
GGATGGCGAGGTGGCGCGCCTCACCAGCGTGCTGGCGGCGCGCGAGGCGG
AGCTCTGCGAGCTGAAGGGGCTGCAGCCCGACGAGGAGACCTTCTGAGGC
GGCTGGCGGCCGTTTGCGGCGACAGCTGTGGAATGCGGCAAGCGACGGCT
GGAGACGGTAGCCGTGTCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5360:1296..2464+

>mRNA_P-wetherbeei_contig5360.2.1 ID=mRNA_P-wetherbeei_contig5360.2.1|Name=mRNA_P-wetherbeei_contig5360.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig5360:1296..2464+ (Phaeothamnion wetherbeei SAG_119_79)
TCCTCCTTTGCGACGCTGGGCAGCAGCGGCGACGGCGGCGGTGACGATGG
CTTCGGCGGCAGAAGCACCCTCTCTGGGCCCGAAGGCGGCGCCGTTTCTG
CCATCCCGGCGGTGGCGGCGGGAGCGGGAGTGGCGTCGGGAACGCCGGGG
GGCGTCGAATTCGTAGAGGACCTGGAAAAAGTCCATGGGAACCTGCGGGA
CATCTTCTCGCGCCTGCTGAGCAGCAAAAAGCACCGGGGACGATCCGGTG
GCGAGTCGGGCGACGCGTATTCATCGCCGCGGCACCGGAACCACCACACG
TCCTACGGAGACGCCGACGCCGAGGTGCTTCGCGGGCTGCTCGACGAAAA
GGAGGAGGAGCTGCGGCAGACGCACGACGCGCTGTTCGCGGCCCACGATG
AGCTCGAGGCGGCCCGCGAGGAGGCCGAGCTGCTGTCGTGCGACAATCGC
CAGCTGCACGCCGAAAAGCGTCAGCTGGATGGCGAGGTGGCGCGCCTCAC
CAGCGTGCTGGCGGCGCGCGAGGCGGAGCTCTGCGAGCTGAAGGGGCTGC
AGCCCGACGAGGAGACCTTCTGA
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