mRNA_P-wetherbeei_contig536.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig536.1.1
Unique NamemRNA_P-wetherbeei_contig536.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig536.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig536contigP-wetherbeei_contig536:2291..3746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1353
Hectar predicted targeting categorysignal peptide
Exons2
Cds size1245
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.4401817-CDS-P-wetherbeei_contig536:2290..34051683186801.4401817-CDS-P-wetherbeei_contig536:2290..3405Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig536 2291..3405 -
1683186801.4512799-CDS-P-wetherbeei_contig536:3509..36391683186801.4512799-CDS-P-wetherbeei_contig536:3509..3639Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig536 3510..3639 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.4611232-UTR-P-wetherbeei_contig536:3639..37461683186801.4611232-UTR-P-wetherbeei_contig536:3639..3746Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig536 3640..3746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig536.1.1prot_P-wetherbeei_contig536.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig536 2291..3639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig536.1.1

>prot_P-wetherbeei_contig536.1.1 ID=prot_P-wetherbeei_contig536.1.1|Name=mRNA_P-wetherbeei_contig536.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=415bp
MSPLLSYLMLLCARWSFVAVLLAVLLSGAISWIITIVAVQICKSILAKGV
IAVPLSPGLKCTLHSISLRAVKFSILVDWVYSMGRRRPFHISVEGVRMAF
VLSYGGPPSGGGVDGSARSPDDNGAGWHGRHSAAAAPPDFLRPLFRFLST
VLHWALNAGILPGVSISDVQVAVSDETSASGSQPCPVEELLPLVVALGSF
DITVRAAVLPASAAAAAAAGGGGALIADGDSGGAFGERGDARMLPQRCVR
LTLALRELPGWPLLRVGSETTMSILSAAVTADFPWPWEGDSVGSAASHGI
PGGVAGDGSGDSDGEVPPLISISPPSHVTCRLGSLYLLAEEADLLQVAQW
GAAAAKLSKRAPPSSPSRSLDAGGPKGGACKGVAEVARTLRRTAVALHAP
YVRAELFRARGAGPV
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mRNA from alignment at P-wetherbeei_contig536:2291..3746-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig536.1.1 ID=mRNA_P-wetherbeei_contig536.1.1|Name=mRNA_P-wetherbeei_contig536.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1456bp|location=Sequence derived from alignment at P-wetherbeei_contig536:2291..3746- (Phaeothamnion wetherbeei SAG_119_79)
ATTACTCCGGACGCGAAAATAACAGTTTCGAAGTTTCGACAAGAGAACGC
CCGCTCATGCATTCGTGACAATTGGCATTTCCCAACAGCATCACCACTGC
CGAAAAGATGTCTCCTCTTCTATCGTATCTCATGCTCCTCTGCGCGAGAT
GGTCCTTCGTGGCCGTCCTGTTGGCCGTCCTGCTGAGCGGCGCCATCAGC
TGGATCATCACCATCGTGGCAGTCCAGATCTGCAAAAGTAATTCGCTTTC
GCAGTGCTGTTTGCTCTGTGCATGTGTCATTTTCGCTAGACAAACCAACT
TCCGCTTTCACTGCACGTCTGTCCTTCTTTTCCGCGTCCAGGCATTTTGG
CCAAAGGTGTTATCGCCGTTCCACTGTCACCTGGCTTGAAGTGCACGCTC
CACAGCATCAGCTTGCGCGCAGTAAAGTTTTCGATCCTTGTCGACTGGGT
GTACAGCATGGGGAGGCGTCGCCCGTTCCACATATCAGTGGAAGGAGTGC
GGATGGCATTCGTCCTCTCGTACGGCGGCCCTCCCAGCGGTGGCGGCGTC
GACGGTAGTGCTCGTTCTCCCGACGATAACGGCGCTGGATGGCACGGGCG
CCATTCGGCCGCTGCTGCCCCGCCCGACTTCCTGCGGCCGCTGTTCAGAT
TTTTGTCTACGGTGCTGCACTGGGCGCTTAACGCAGGGATCTTGCCCGGC
GTGAGCATCTCGGACGTTCAGGTGGCGGTGTCGGACGAGACTAGTGCATC
TGGTTCCCAGCCGTGTCCGGTCGAAGAACTCCTGCCGCTGGTGGTGGCAC
TCGGGTCATTCGACATCACGGTGCGTGCGGCCGTGCTCCCGGCGTCTGCC
GCGGCGGCCGCTGCCGCGGGCGGCGGTGGCGCTTTGATCGCCGACGGAGA
CAGCGGCGGCGCATTCGGGGAGCGAGGGGATGCAAGGATGTTGCCGCAAC
GGTGCGTCCGCCTAACGTTGGCCTTAAGGGAGTTGCCGGGCTGGCCGCTT
CTCCGCGTCGGGAGCGAAACAACCATGAGCATTCTCAGCGCCGCCGTAAC
GGCAGATTTTCCATGGCCGTGGGAAGGTGACAGCGTTGGCAGTGCCGCCA
GCCACGGAATACCCGGCGGCGTCGCCGGCGACGGCAGCGGCGACAGCGAT
GGCGAGGTCCCGCCGCTGATCTCCATATCGCCGCCGTCGCATGTGACATG
CCGCCTGGGTTCACTGTACCTTTTGGCGGAGGAAGCAGACTTGCTTCAGG
TGGCACAATGGGGAGCGGCTGCTGCGAAGCTCTCAAAGCGGGCCCCGCCG
TCGTCGCCGTCGCGCTCGCTCGACGCCGGCGGCCCCAAGGGTGGTGCGTG
CAAGGGTGTGGCGGAGGTGGCACGGACGCTGCGCCGGACCGCCGTCGCTT
TGCACGCTCCCTATGTGCGGGCCGAACTCTTCCGGGCCAGAGGCGCCGGT
CCTGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig536:2291..3746-

>mRNA_P-wetherbeei_contig536.1.1 ID=mRNA_P-wetherbeei_contig536.1.1|Name=mRNA_P-wetherbeei_contig536.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1245bp|location=Sequence derived from alignment at P-wetherbeei_contig536:2291..3746- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTCCTCTTCTATCGTATCTCATGCTCCTCTGCGCGAGATGGTCCTT
CGTGGCCGTCCTGTTGGCCGTCCTGCTGAGCGGCGCCATCAGCTGGATCA
TCACCATCGTGGCAGTCCAGATCTGCAAAAGCATTTTGGCCAAAGGTGTT
ATCGCCGTTCCACTGTCACCTGGCTTGAAGTGCACGCTCCACAGCATCAG
CTTGCGCGCAGTAAAGTTTTCGATCCTTGTCGACTGGGTGTACAGCATGG
GGAGGCGTCGCCCGTTCCACATATCAGTGGAAGGAGTGCGGATGGCATTC
GTCCTCTCGTACGGCGGCCCTCCCAGCGGTGGCGGCGTCGACGGTAGTGC
TCGTTCTCCCGACGATAACGGCGCTGGATGGCACGGGCGCCATTCGGCCG
CTGCTGCCCCGCCCGACTTCCTGCGGCCGCTGTTCAGATTTTTGTCTACG
GTGCTGCACTGGGCGCTTAACGCAGGGATCTTGCCCGGCGTGAGCATCTC
GGACGTTCAGGTGGCGGTGTCGGACGAGACTAGTGCATCTGGTTCCCAGC
CGTGTCCGGTCGAAGAACTCCTGCCGCTGGTGGTGGCACTCGGGTCATTC
GACATCACGGTGCGTGCGGCCGTGCTCCCGGCGTCTGCCGCGGCGGCCGC
TGCCGCGGGCGGCGGTGGCGCTTTGATCGCCGACGGAGACAGCGGCGGCG
CATTCGGGGAGCGAGGGGATGCAAGGATGTTGCCGCAACGGTGCGTCCGC
CTAACGTTGGCCTTAAGGGAGTTGCCGGGCTGGCCGCTTCTCCGCGTCGG
GAGCGAAACAACCATGAGCATTCTCAGCGCCGCCGTAACGGCAGATTTTC
CATGGCCGTGGGAAGGTGACAGCGTTGGCAGTGCCGCCAGCCACGGAATA
CCCGGCGGCGTCGCCGGCGACGGCAGCGGCGACAGCGATGGCGAGGTCCC
GCCGCTGATCTCCATATCGCCGCCGTCGCATGTGACATGCCGCCTGGGTT
CACTGTACCTTTTGGCGGAGGAAGCAGACTTGCTTCAGGTGGCACAATGG
GGAGCGGCTGCTGCGAAGCTCTCAAAGCGGGCCCCGCCGTCGTCGCCGTC
GCGCTCGCTCGACGCCGGCGGCCCCAAGGGTGGTGCGTGCAAGGGTGTGG
CGGAGGTGGCACGGACGCTGCGCCGGACCGCCGTCGCTTTGCACGCTCCC
TATGTGCGGGCCGAACTCTTCCGGGCCAGAGGCGCCGGTCCTGTA
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