mRNA_P-wetherbeei_contig53597.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53597.1.1
Unique NamemRNA_P-wetherbeei_contig53597.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53597.1.1 vs. uniprot
Match: A0A076PYJ0_COMTE (Citrate synthase (unknown stereospecificity) n=1 Tax=Comamonas testosteroni TK102 TaxID=1392005 RepID=A0A076PYJ0_COMTE)

HSP 1 Score: 117 bits (293), Expect = 4.830e-29
Identity = 74/171 (43.27%), Postives = 104/171 (60.82%), Query Frame = 1
Query:   40 TPVGMFAQMALALSSVERAGVDRDLPDSAGAAKTLIQAFVGASAHFGPSGKYLSHGDAGWLADHLSEALAPQGKNHAA-ILNAALVLSAEHELSAPTFAVRICASTGADIYACVAAGIMAQSGPMQVGGSIDAENLMRAVAQGKE-------TPRSAFATGPLPCFGHPLY 528
            TP+ + + +  +LS+ ERA  D      A A + L+Q   G +  FGP  ++ +  D  ++A  ++  L    +  A   ++AALV+SAEHELSAPTFA RICASTGAD++ACVAA ++ QSG MQVGG+++ E L+ A+  G E          S F +  LPCFGHPLY
Sbjct:    8 TPLKLLSMLTTSLSAFERAEDDMQTAGFA-ACRRLLQTLAGTAGVFGPRAQFSAPRDGEFMAQCVARGLGLGDRPDAVRAIDAALVMSAEHELSAPTFATRICASTGADLHACVAAAMLTQSGSMQVGGAVEVEALIDALPFGLEPEDALPLAAASGFKSNELPCFGHPLY 177          
BLAST of mRNA_P-wetherbeei_contig53597.1.1 vs. uniprot
Match: A0A5N7W8D2_COMSP (Citrate synthase (unknown stereospecificity) n=4 Tax=Comamonadaceae TaxID=80864 RepID=A0A5N7W8D2_COMSP)

HSP 1 Score: 117 bits (293), Expect = 7.220e-28
Identity = 74/171 (43.27%), Postives = 104/171 (60.82%), Query Frame = 1
Query:   40 TPVGMFAQMALALSSVERAGVDRDLPDSAGAAKTLIQAFVGASAHFGPSGKYLSHGDAGWLADHLSEALAPQGKNHAA-ILNAALVLSAEHELSAPTFAVRICASTGADIYACVAAGIMAQSGPMQVGGSIDAENLMRAVAQGKE-------TPRSAFATGPLPCFGHPLY 528
            TP+ + + +  +LS+ ERA  D      A A + L+Q   G +  FGP  ++ +  D  ++A  ++  L    +  A   ++AALV+SAEHELSAPTFA RICASTGAD++ACVAA ++ QSG MQVGG+++ E L+ A+  G E          S F +  LPCFGHPLY
Sbjct:  175 TPLKLLSMLTTSLSAFERAEDDMQTAGFA-ACRRLLQTLAGTAGVFGPRAQFSAPRDGEFMAQCVARGLGLGDRPDAVRAIDAALVMSAEHELSAPTFATRICASTGADLHACVAAAMLTQSGSMQVGGAVEVEALIDALPFGLEPEDALPLAAASGFKSNELPCFGHPLY 344          
BLAST of mRNA_P-wetherbeei_contig53597.1.1 vs. uniprot
Match: A0A4D4JK71_9BURK (Citrate synthase (unknown stereospecificity) n=7 Tax=cellular organisms TaxID=131567 RepID=A0A4D4JK71_9BURK)

HSP 1 Score: 114 bits (285), Expect = 4.470e-27
Identity = 74/171 (43.27%), Postives = 102/171 (59.65%), Query Frame = 1
Query:   40 TPVGMFAQMALALSSVERAGVDRDLPDSAGAAKTLIQAFVGASAHFGPSGKYLSHGDAGWLADHLSEALAPQGKNHAA-ILNAALVLSAEHELSAPTFAVRICASTGADIYACVAAGIMAQSGPMQVGGSIDAENLMRAVAQGKE-------TPRSAFATGPLPCFGHPLY 528
            TP+ + A +  +LS+ ERA  D +    A A + L+Q   G +  FGP  ++    D  ++A  ++  L    +  A   ++AALV+SAEHELSAPTFA RICASTGAD++ACVA  ++ QSGPMQVGG+++ E L+ A+  G            S F    LPCFGHPLY
Sbjct:  110 TPLKLLAMLTTSLSAFERAEDDVEAAGFA-ACRRLLQWLAGTAGVFGPEPRFSPPRDGEFVAQCVARGLGLGDRPDAVRAIDAALVMSAEHELSAPTFAARICASTGADLHACVATAMLTQSGPMQVGGAVEVEALIDALPCGLAPEDALPLAAASGFKGNELPCFGHPLY 279          
BLAST of mRNA_P-wetherbeei_contig53597.1.1 vs. uniprot
Match: UPI001A8C821A (citrate synthase n=1 Tax=Trinickia sp. DHG64 TaxID=2816356 RepID=UPI001A8C821A)

HSP 1 Score: 114 bits (285), Expect = 6.030e-27
Identity = 66/133 (49.62%), Postives = 87/133 (65.41%), Query Frame = 1
Query:  142 LIQAFVGASAHFGPSGKYLSHGDAGWLADHLSEALAPQGKNHAA-ILNAALVLSAEHELSAPTFAVRICASTGADIYACVAAGIMAQSGPMQVGGSIDAENLMRAVAQGKETPRS---AFATGPLPCFGHPLY 528
            LIQ F GA+   GP   YL   +   +A  ++  L  +  +    IL+AALVLSAE+EL+APTFA RICASTGAD+YACVA+ +  QSGPMQVGG+ D E ++ A+ + +  P S    ++ G LPCF HPLY
Sbjct:  169 LIQTFCGAAGLIGPKRTYLPPNEGETVAACIARGLGRERDSEVIRILDAALVLSAENELAAPTFAARICASTGADLYACVASALQVQSGPMQVGGTFDVEIMLEALTRARGRPESRLAGYSRGGLPCFNHPLY 301          
BLAST of mRNA_P-wetherbeei_contig53597.1.1 vs. uniprot
Match: UPI000422700E (citrate synthase n=1 Tax=Ottowia thiooxydans TaxID=219182 RepID=UPI000422700E)

HSP 1 Score: 111 bits (277), Expect = 1.090e-25
Identity = 74/162 (45.68%), Postives = 99/162 (61.11%), Query Frame = 1
Query:   52 MFAQMALALSSVERAGVDRD-LPDSAGAAKTLIQAFVGASAHFGPSGKYLSHGDAGWLADHLSEALAPQGKNHAAI--LNAALVLSAEHELSAPTFAVRICASTGADIYACVAAGIMAQSGPMQVGGSIDAENLMRAVAQGKETPRSAFATGPLPCFGHPLY 528
            + A+ ALA++S+ER   +   L  +AG    LIQAF  A+ + GP       GD+  +A  L   L   G + +AI  LN ALVLSA+HELSAPTF  RICASTG D+YACV A +MA  GPMQ+GG+ D E+++++       P    ++   PCFGHPLY
Sbjct:  173 LLARTALAMTSLERPSSETAYLGRTAGI--RLIQAFAAAAGYLGPRRAPEPQGDSEHVAAFLLRGLGGAGNDPSAINVLNTALVLSADHELSAPTFVARICASTGVDLYACVVAALMAHCGPMQMGGAADLEDMLQS-----GDPSPLVSSLDAPCFGHPLY 327          
BLAST of mRNA_P-wetherbeei_contig53597.1.1 vs. uniprot
Match: UPI001BBD3A84 (Citrate synthase n=1 Tax=Hydrogenophaga sp. TaxID=1904254 RepID=UPI001BBD3A84)

HSP 1 Score: 111 bits (277), Expect = 1.210e-25
Identity = 70/171 (40.94%), Postives = 100/171 (58.48%), Query Frame = 1
Query:   40 TPVGMFAQMALALSSVERAGVDRDLPDSAGAAKTLIQAFVGASAHFGPSGKYLSHGDAGWLADHLSEALAPQGKNHAA-ILNAALVLSAEHELSAPTFAVRICASTGADIYACVAAGIMAQSGPMQVGGSIDAENLMRAVAQG-------KETPRSAFATGPLPCFGHPLY 528
            TP+ + + +  +LS+ E+A  D      A   + L+Q   G +  FGP  +Y +  +  +LA  ++  L  +    A   ++AALV+SAEHELSAPTFA RICASTGAD++ACVA  ++ QSG MQVGG+++ E L+ A+          K    S F +  LPCF HPLY
Sbjct:  164 TPLRLLSMLTTSLSAFEQAEDDMQTAGPA-TCRRLLQTLAGTAGVFGPGSRYSAPHEGEFLAQCIARGLGLKKMPDAVQAIDAALVMSAEHELSAPTFAARICASTGADLHACVATAMLTQSGAMQVGGAVEVEALIDALPSRLEPEDALKRAAASGFMSNELPCFNHPLY 333          
BLAST of mRNA_P-wetherbeei_contig53597.1.1 vs. uniprot
Match: I2IMT2_9BURK (Citrate synthase (unknown stereospecificity) n=1 Tax=Burkholderia sp. Ch1-1 TaxID=243261 RepID=I2IMT2_9BURK)

HSP 1 Score: 111 bits (277), Expect = 1.410e-25
Identity = 74/180 (41.11%), Postives = 101/180 (56.11%), Query Frame = 1
Query:    1 RRTVVSTANAARKTPVGMFAQMALALSSVERAGVDRDLPDSAGAAKTLIQAFVGASAHFGPSGKYLSHGDAGWLADHLSEALAPQGKNHAA-ILNAALVLSAEHELSAPTFAVRICASTGADIYACVAAGIMAQSGPMQVGGSIDAENLMRAVAQGK---ETPRSAFATGPLPCFGHPLY 528
            R T    A A    P+G    +   +S+    G      D+      LIQ F GA+  FGP G Y    D   +A  ++  LA +G       ++AALVLSA++EL+APTFA RIC+STGAD+YACV++ +  QSGPMQVGG+ D E +  A+A  +   ET  + ++   LPCF HPLY
Sbjct:  171 RCTAAHQAEAPDTPPLGWLTLLTYLISNSPSCGAATRNHDAVSTGILLIQIFSGAAGLFGPGGVYKPPRDGETVAACIARGLAREGDADVIRFVDAALVLSADNELAAPTFAARICSSTGADLYACVSSALAVQSGPMQVGGTQDVEIMFDALAGTRGAHETRPAGYSRAGLPCFNHPLY 350          
BLAST of mRNA_P-wetherbeei_contig53597.1.1 vs. uniprot
Match: UPI001A97D30A (hypothetical protein n=1 Tax=Bordetella petrii TaxID=94624 RepID=UPI001A97D30A)

HSP 1 Score: 110 bits (274), Expect = 3.280e-25
Identity = 76/167 (45.51%), Postives = 96/167 (57.49%), Query Frame = 1
Query:   40 TPVGMFAQMALALSSVERAGVDRDLPDSAGAAKTLIQAFVGASAHFGPSGKYLSHGDAGWLADHLSEALA----PQGKNHAAILNAALVLSAEHELSAPTFAVRICASTGADIYACVAAGIMAQSGPMQVGGSIDAENLMRAVAQGKETPRSAFATGPLPCFGHPLY 528
            +P+ + A MAL LS++E     R    ++G    LI AF GAS +FGP   Y       ++A  L         P      A +NAALVLSA++ELSAPTF  RI +STG D++ACVAA +MAQ+GPMQ GG ID E  +  V       RS   TG +PCFGHPLY
Sbjct:  172 SPIRLLAMMALQLSALEADAAGRGDVRTSGV--RLISAFAGASGYFGPRRAYQRGEGQEFIAQRLLRGFGLSRQPGQDKLLASMNAALVLSADNELSAPTFCARITSSTGVDVHACVAAALMAQAGPMQAGGMIDLEQYLADVQAADGRARSY--TG-VPCFGHPLY 333          
BLAST of mRNA_P-wetherbeei_contig53597.1.1 vs. uniprot
Match: UPI001CB19B4B (citrate synthase n=1 Tax=Paraburkholderia caribensis TaxID=75105 RepID=UPI001CB19B4B)

HSP 1 Score: 109 bits (272), Expect = 6.530e-25
Identity = 62/133 (46.62%), Postives = 89/133 (66.92%), Query Frame = 1
Query:  142 LIQAFVGASAHFGPSGKYLSHGDAGWLADHLSEALAPQGKNHAA-ILNAALVLSAEHELSAPTFAVRICASTGADIYACVAAGIMAQSGPMQVGGSIDAENLMRAVA---QGKETPRSAFATGPLPCFGHPLY 528
            LIQAF GA+   GP   +L+  +   +A  ++  L  +G   A  +++AALVLSA++EL+APTFA RICASTGAD+YACVA+ +  QSGPMQVGG++D E ++ A+      +++  + +    LPCF HPLY
Sbjct:  206 LIQAFAGAAGLLGPGKAHLAVVNGETIAATIARGLGHEGNGDAIRLIDAALVLSADNELAAPTFAARICASTGADLYACVASALAVQSGPMQVGGTVDVEIMLEALVGDGASRDSRPAGYLRSGLPCFNHPLY 338          
BLAST of mRNA_P-wetherbeei_contig53597.1.1 vs. uniprot
Match: A0A7Z0MII7_9BURK (Citrate synthase (unknown stereospecificity) n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A7Z0MII7_9BURK)

HSP 1 Score: 108 bits (270), Expect = 1.170e-24
Identity = 70/168 (41.67%), Postives = 97/168 (57.74%), Query Frame = 1
Query:   40 TPVGMFAQMALALSSVERAGVDRDLPDSAGAAKTLIQAFVGASAHFGPSGKYLSHGDAGWLADHLSEALA----PQGKNHAAILNAALVLSAEHELSAPTFAVRICASTGADIYACVAAGIMAQSGPMQVGGSIDAENLMRAVAQGKETPRSAFATGP-LPCFGHPLY 528
            +P+   A +A+ L+SVE  G      D+  A   ++ AF G S + G  G Y   G+  ++A+ L +       P+ +    +LN ALVLS ++ELS PTF  RI ASTGAD+Y+CV A IMAQ GPMQ+GG+   E  ++AV Q   +PR     G  +PCF HPLY
Sbjct:  170 SPLAALAHIAVELASVETVGGVSPHVDARTAGVCVLNAFAGVSGNLGARGVYQPQGENEYIAERLLKGYGLTRRPEQEKLLRLLNTALVLSVDNELSTPTFCARISASTGADLYSCVVAAIMAQGGPMQIGGASYLEAYLQAVLQ---SPRDVRHNGQDIPCFDHPLY 334          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53597.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A076PYJ0_COMTE4.830e-2943.27Citrate synthase (unknown stereospecificity) n=1 T... [more]
A0A5N7W8D2_COMSP7.220e-2843.27Citrate synthase (unknown stereospecificity) n=4 T... [more]
A0A4D4JK71_9BURK4.470e-2743.27Citrate synthase (unknown stereospecificity) n=7 T... [more]
UPI001A8C821A6.030e-2749.62citrate synthase n=1 Tax=Trinickia sp. DHG64 TaxID... [more]
UPI000422700E1.090e-2545.68citrate synthase n=1 Tax=Ottowia thiooxydans TaxID... [more]
UPI001BBD3A841.210e-2540.94Citrate synthase n=1 Tax=Hydrogenophaga sp. TaxID=... [more]
I2IMT2_9BURK1.410e-2541.11Citrate synthase (unknown stereospecificity) n=1 T... [more]
UPI001A97D30A3.280e-2545.51hypothetical protein n=1 Tax=Bordetella petrii Tax... [more]
UPI001CB19B4B6.530e-2546.62citrate synthase n=1 Tax=Paraburkholderia caribens... [more]
A0A7Z0MII7_9BURK1.170e-2441.67Citrate synthase (unknown stereospecificity) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53597contigP-wetherbeei_contig53597:3..530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1123504.JQKD01000005_gene4937
PFAMsCitrate_synt,HTH_17
Model size528
Max annot lvl1224|Proteobacteria
KEGG rclassRC00004,RC00067
KEGG koko:K01647
KEGG ReactionR00351
KEGG Pathwayko00020,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map01100,map01110,map01120,map01130,map01200,map01210,map01230
KEGG ModuleM00009,M00010,M00012,M00740
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.4e-28
EggNOG OGsCOG0372@1|root,COG0372@2|Bacteria,1MXFW@1224|Proteobacteria,2VHZS@28216|Betaproteobacteria,4AC74@80864|Comamonadaceae
EC2.3.3.1
DescriptionCitrate synthase, C-terminal domain
Cds size528
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.407627-CDS-P-wetherbeei_contig53597:2..5301683186801.407627-CDS-P-wetherbeei_contig53597:2..530Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53597 3..530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53597.1.1prot_P-wetherbeei_contig53597.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53597 3..530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53597.1.1

>prot_P-wetherbeei_contig53597.1.1 ID=prot_P-wetherbeei_contig53597.1.1|Name=mRNA_P-wetherbeei_contig53597.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp
RRTVVSTANAARKTPVGMFAQMALALSSVERAGVDRDLPDSAGAAKTLIQ
AFVGASAHFGPSGKYLSHGDAGWLADHLSEALAPQGKNHAAILNAALVLS
AEHELSAPTFAVRICASTGADIYACVAAGIMAQSGPMQVGGSIDAENLMR
AVAQGKETPRSAFATGPLPCFGHPLY
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mRNA from alignment at P-wetherbeei_contig53597:3..530-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53597.1.1 ID=mRNA_P-wetherbeei_contig53597.1.1|Name=mRNA_P-wetherbeei_contig53597.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig53597:3..530- (Phaeothamnion wetherbeei SAG_119_79)
CGGAGGACCGTCGTTTCGACCGCGAACGCGGCCCGGAAAACGCCGGTCGG CATGTTTGCCCAAATGGCGCTCGCGCTAAGCAGTGTGGAACGAGCCGGCG TCGATCGGGACCTGCCTGATTCCGCCGGGGCTGCAAAGACGCTGATCCAG GCATTCGTTGGGGCATCGGCGCACTTCGGGCCTTCGGGAAAGTATCTTTC GCATGGGGATGCGGGGTGGCTGGCGGACCATCTTTCCGAAGCGCTGGCGC CGCAGGGCAAAAACCATGCAGCGATCCTCAATGCAGCGCTTGTCTTGTCG GCTGAACACGAATTGTCCGCGCCCACCTTTGCCGTCCGGATTTGCGCATC CACAGGGGCCGACATCTACGCTTGTGTGGCGGCGGGGATCATGGCGCAAT CCGGACCAATGCAGGTCGGCGGCAGCATAGACGCGGAGAACTTGATGCGC GCGGTGGCCCAAGGCAAGGAAACGCCGCGCAGCGCGTTCGCGACAGGACC GCTTCCCTGTTTCGGACATCCCCTCTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53597:3..530-

>mRNA_P-wetherbeei_contig53597.1.1 ID=mRNA_P-wetherbeei_contig53597.1.1|Name=mRNA_P-wetherbeei_contig53597.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig53597:3..530- (Phaeothamnion wetherbeei SAG_119_79)
CGGAGGACCGTCGTTTCGACCGCGAACGCGGCCCGGAAAACGCCGGTCGG
CATGTTTGCCCAAATGGCGCTCGCGCTAAGCAGTGTGGAACGAGCCGGCG
TCGATCGGGACCTGCCTGATTCCGCCGGGGCTGCAAAGACGCTGATCCAG
GCATTCGTTGGGGCATCGGCGCACTTCGGGCCTTCGGGAAAGTATCTTTC
GCATGGGGATGCGGGGTGGCTGGCGGACCATCTTTCCGAAGCGCTGGCGC
CGCAGGGCAAAAACCATGCAGCGATCCTCAATGCAGCGCTTGTCTTGTCG
GCTGAACACGAATTGTCCGCGCCCACCTTTGCCGTCCGGATTTGCGCATC
CACAGGGGCCGACATCTACGCTTGTGTGGCGGCGGGGATCATGGCGCAAT
CCGGACCAATGCAGGTCGGCGGCAGCATAGACGCGGAGAACTTGATGCGC
GCGGTGGCCCAAGGCAAGGAAACGCCGCGCAGCGCGTTCGCGACAGGACC
GCTTCCCTGTTTCGGACATCCCCTCTAT
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