mRNA_P-wetherbeei_contig5357.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5357.2.1
Unique NamemRNA_P-wetherbeei_contig5357.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5357.2.1 vs. uniprot
Match: A0A835Z5I8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I8_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.230e-62
Identity = 105/160 (65.62%), Postives = 131/160 (81.88%), Query Frame = 1
Query:  244 DLRPVSGTGRLSTSGTTVHGHGTAFMRELMPGDAVMITHPTTLMEETRIVKMVLSDSSMGISSAFSSDLVSTTAFRYITAPRIEETTEQKETKRKQGRDAEEKLAFGTYAGSGGSKVVYRVKKAGVYGGYEIITADAGQEMSREELLQLRSKKKADRHCY 723
            +LRPV+GTGR+S+SGT V GHGT FM EL  GDA+++THPT+L +ETR+V+MVLSD+  G+SSAFS+DL+STTAF+Y++APR E   E      K+ R  EE  AFGTY+  GGSKVVYRVKKAGVYGGYEI+TAD+ + M+REELL +RSKKKADR+CY
Sbjct:   33 ELRPVAGTGRISSSGTVVTGHGTRFMSELRAGDALIVTHPTSLAQETRLVRMVLSDAHAGVSSAFSTDLISTTAFQYVSAPRGE--AEDPAVAAKRARLQEEDRAFGTYSSGGGSKVVYRVKKAGVYGGYEIVTADSKKSMTREELLNVRSKKKADRYCY 190          
BLAST of mRNA_P-wetherbeei_contig5357.2.1 vs. uniprot
Match: D7FV70_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV70_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 9.820e-54
Identity = 121/223 (54.26%), Postives = 148/223 (66.37%), Query Frame = 1
Query:   52 MVKGGRLIFKGGAPATASTVSKGKGKNVRRPRADSSGXXXXXXXXXXXXXXXXXXXXATAQAEEDLRPVSGTGRLSTSGTTVHGHGTAFMRELMPGDAVMITHPTTLMEETRIVKMVLSDSSMGISSAFSSDLVSTTAFRYITAPRIEETTEQKETKRKQGRDAEEKLAFGTYAGSGGSKVVYRVKKAGVYGGYEIITADAGQEMSREELLQLRSKKKADRHC 720
            M KGGRL+FKGG  A +S   K               XXX      XXXXXXXXXXX       ++RPVSGTGR+++SGT VHGH   FM EL  GDA++ITHPTTL EETRI+KMVLS+ S+ ISS FSSDL+STT FRYI APR+E + E K  +RK+ +  EE  AFGTYAG+GG ++VYR +     G Y II     + M+REE+L +R+ KKADRHC
Sbjct:    1 MPKGGRLVFKGGEVAVSSRGKKKDKLXXXXXXXXXXXXXXSTGEAAXXXXXXXXXXXXXXXXXXEMRPVSGTGRITSSGTAVHGHEAKFMDELHSGDAILITHPTTLREETRIIKMVLSNMSISISSPFSSDLISTTNFRYIKAPRLEVSAETKAEERKKRKVQEEDSAFGTYAGAGGKRLVYRERTPA--GNYRIIETTVDEAMTREEMLDMRATKKADRHC 221          
BLAST of mRNA_P-wetherbeei_contig5357.2.1 vs. uniprot
Match: A0A485LKB6_9STRA (Aste57867_21986 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LKB6_9STRA)

HSP 1 Score: 167 bits (423), Expect = 2.830e-48
Identity = 98/169 (57.99%), Postives = 117/169 (69.23%), Query Frame = 1
Query:  223 ATAQAEEDLRPVSGTGRLSTSGTTVHGH-GTAFMRELMPGDAVMITHPTTLMEETRIVKMVLSDSSMGISSAFSSDLVSTTAFRYITAPRIEETTEQKETKRKQGRDAEEKLAFGTYAG--SGGSKVVYRVKKAGVYGGYEIITADAGQEMSREELLQLRSKKKADRHC 720
            A A+ E  L  V GTGR+ TSGTTV G  GT F  EL  GDA++I HPT+L EETRI+ MVLSD S+ ISS FS+DLVSTT F YI AP+ E      E K+K+ ++ EE  AFGTYAG  + G++  YRVKKAGVYGGY I+   A    SRE+LL +RSKKK DRHC
Sbjct:   44 APAEEEFQLVKVQGTGRILTSGTTVMGKMGTRFSHELSIGDALIIVHPTSLKEETRIITMVLSDVSVSISSPFSTDLVSTTTFSYIKAPKEEVDVADLENKKKRKKNDEELFAFGTYAGGTTAGTEFTYRVKKAGVYGGYAILKETADSNRSREDLLDIRSKKKGDRHC 212          
BLAST of mRNA_P-wetherbeei_contig5357.2.1 vs. uniprot
Match: A0A1V9YA44_9STRA (Niemann-Pick C1 protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YA44_9STRA)

HSP 1 Score: 166 bits (421), Expect = 5.490e-48
Identity = 100/162 (61.73%), Postives = 113/162 (69.75%), Query Frame = 1
Query:  244 DLRPVSGTGRLSTSGTTVHGH-GTAFMRELMPGDAVMITHPTTLMEETRIVKMVLSDSSMGISSAFSSDLVSTTAFRYITAPRIEETTEQKETKRKQGRDAEEKLAFGTYAG--SGGSKVVYRVKKAGVYGGYEIITADAGQEMSREELLQLRSKKKADRHC 720
            +L  V GTGR+ TSGTTV G  GT F  EL  GDA++I HPT+L EETRIV+MVLSD S+ ISSAFSSDLVSTT F YI AP       QKE   K+ +  EE  AFGTYAG  + GS++ YRVKK+GVYGGY II   A    SREELL LRSK K DRHC
Sbjct:   50 ELVKVQGTGRILTSGTTVMGKMGTRFASELSVGDAMIIVHPTSLQEETRIVRMVLSDVSISISSAFSSDLVSTTTFHYIKAPPDXXXXAQKELATKKQKKDEEGFAFGTYAGGTTAGSQLTYRVKKSGVYGGYTIIKETADTSRSREELLDLRSKMKGDRHC 211          
BLAST of mRNA_P-wetherbeei_contig5357.2.1 vs. uniprot
Match: A0A7S2S051_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S051_9STRA)

HSP 1 Score: 166 bits (421), Expect = 6.960e-48
Identity = 96/156 (61.54%), Postives = 115/156 (73.72%), Query Frame = 1
Query:  256 VSGTGRLSTSGTTVHGH-GTAFMRELMPGDAVMITHPTTLMEETRIVKMVLSDSSMGISSAFSSDLVSTTAFRYITAPRIEETTEQKETKRKQGRDAEEKLAFGTYAGSGGSKVVYRVKKAGVYGGYEIITADAGQEMSREELLQLRSKKKADRHC 720
            V+G GR+STSGTTVHGH GT FM++L  GDAV+ITHPTT+M+ETRIVKMVLSD SM ISS FSSDL+ST  FR++ AP  E   E  E ++KQ     EK AFGTYAG  G+K VYR KKAG +GGY I   D   + SR +LL++R+ KKADR C
Sbjct:   65 VAGKGRISTSGTTVHGHEGTQFMKQLKHGDAVIITHPTTMMDETRIVKMVLSDVSMSISSPFSSDLISTVEFRFVKAPEEEVDYEAIENQKKQKLLDTEKEAFGTYAGDLGTKFVYREKKAGAFGGYAIRVEDTA-DRSRTDLLEMRAGKKADRFC 219          
BLAST of mRNA_P-wetherbeei_contig5357.2.1 vs. uniprot
Match: W4H648_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H648_9STRA)

HSP 1 Score: 165 bits (417), Expect = 2.070e-47
Identity = 98/171 (57.31%), Postives = 118/171 (69.01%), Query Frame = 1
Query:  223 ATAQAEEDLRPVS--GTGRLSTSGTTVHGH-GTAFMRELMPGDAVMITHPTTLMEETRIVKMVLSDSSMGISSAFSSDLVSTTAFRYITAPRIEETTEQKETKRKQGRDAEEKLAFGTYAG--SGGSKVVYRVKKAGVYGGYEIITADAGQEMSREELLQLRSKKKADRHC 720
            AT   ++D + V   GTGR+ TSGTTV G  GT F  EL  GDA++I HPT++ EETRIVKMVLSD S+ ISS FSSDLVSTT F YI AP  E   +  ETK++  ++ EE  AFGTYAG  S GS+  YRVKKAG YGGY ++   A    SRE+LL +RSK+K DRHC
Sbjct:   39 ATGDDDDDFQLVKLQGTGRILTSGTTVMGKMGTKFYHELSIGDALIIMHPTSMKEETRIVKMVLSDVSISISSPFSSDLVSTTTFSYIKAPPEEIDQDAIETKKRSKKNEEETFAFGTYAGGTSAGSEFTYRVKKAGAYGGYAVLKETADANRSREDLLDIRSKRKGDRHC 209          
BLAST of mRNA_P-wetherbeei_contig5357.2.1 vs. uniprot
Match: A0A024UEL5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UEL5_9STRA)

HSP 1 Score: 164 bits (415), Expect = 4.260e-47
Identity = 99/171 (57.89%), Postives = 119/171 (69.59%), Query Frame = 1
Query:  223 ATAQAEEDLRPVS--GTGRLSTSGTTVHGH-GTAFMRELMPGDAVMITHPTTLMEETRIVKMVLSDSSMGISSAFSSDLVSTTAFRYITAPRIEETTEQKETKRKQGRDAEEKLAFGTYAG--SGGSKVVYRVKKAGVYGGYEIITADAGQEMSREELLQLRSKKKADRHC 720
            A +  E+D + +   GTGR+ TSGTTV G  GT F  EL  GDA++I HPT+L EETRIVKMVLSD S+ ISS FSSDLVSTT F YI AP  E   +  E+K++  ++ EE  AFGTYAG  + G++  YRVKKAGVYGGY II   A    SREELL +RSK+K DRHC
Sbjct:   40 ARSDDEDDFQLIKLQGTGRILTSGTTVMGKMGTKFFHELSIGDALIINHPTSLKEETRIVKMVLSDVSVSISSPFSSDLVSTTTFWYIKAPPEEVDKDAVESKKRSKKNDEEASAFGTYAGGTTAGTEFTYRVKKAGVYGGYAIIKETADANRSREELLDIRSKRKGDRHC 210          
BLAST of mRNA_P-wetherbeei_contig5357.2.1 vs. uniprot
Match: A0A7S1XT62_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XT62_9STRA)

HSP 1 Score: 164 bits (416), Expect = 5.760e-47
Identity = 89/165 (53.94%), Postives = 118/165 (71.52%), Query Frame = 1
Query:  232 QAEEDLRPVSGTGRLSTSGTTVHGHGTAFMRELMPGDAVMITHPTTLMEETRIVKMVLSDSSMGISSAFSSDLVSTTAFRYITAPRIEETTEQKETKRKQGRDAEEK-LAFGTYAGSGGSKVVYRVKKAGVYGGYEIITADAGQEMSREELLQLRSKKKADRHCY 723
            + E  LRPV G G +++SGT + G+GTAF +EL  GD ++ITHPTTLMEE+R+V+M+LSD S  I + FSSDL+S+T+FRYI  P+ EE             DAEE+  A GTYAG+ G+ V  RVKKAG YGGY+IIT  + +E++R E+L++RSK K DRHCY
Sbjct:   69 EEEPVLRPVRGVGYIASSGTVLSGYGTAFTKELRHGDQIIITHPTTLMEESRMVRMLLSDMSCAIDAPFSSDLLSSTSFRYIRMPKQEEXXXXXXXXXXXXNDAEEEGSALGTYAGNLGTTVTKRVKKAGAYGGYKIITESSDRELTRSEMLEVRSKAKGDRHCY 233          
BLAST of mRNA_P-wetherbeei_contig5357.2.1 vs. uniprot
Match: A0A6G0XV17_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XV17_9STRA)

HSP 1 Score: 161 bits (408), Expect = 4.970e-46
Identity = 94/164 (57.32%), Postives = 113/164 (68.90%), Query Frame = 1
Query:  238 EEDLRPVSGTGRLSTSGTTVHGH-GTAFMRELMPGDAVMITHPTTLMEETRIVKMVLSDSSMGISSAFSSDLVSTTAFRYITAPRIEETTEQKETKRKQGRDAEEKLAFGTYAGSG--GSKVVYRVKKAGVYGGYEIITADAGQEMSREELLQLRSKKKADRHC 720
            E  L  + G+GR+ TSGTTV G  GT F  EL  GDA++I HPT+L EETRIV MVLSD S+ ISS FSSDL+STT F YI AP  E   ++ ETK+++  + EE  AFGTYAG    G++  YRVKK+G YGGY I+   A    SREELL +RSKKK DRHC
Sbjct:   48 EFQLVKLQGSGRILTSGTTVMGKMGTRFSHELSIGDALIILHPTSLKEETRIVTMVLSDVSISISSPFSSDLISTTTFSYIKAPPEEVDKDELETKKRRKNEQEESFAFGTYAGGTTVGTEYTYRVKKSGAYGGYAIVKETADSNRSREELLDIRSKKKGDRHC 211          
BLAST of mRNA_P-wetherbeei_contig5357.2.1 vs. uniprot
Match: F0WLZ1_9STRA (Uncharacterized protein AlNc14C150G7504 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLZ1_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.410e-45
Identity = 90/165 (54.55%), Postives = 119/165 (72.12%), Query Frame = 1
Query:  235 AEEDLRPVSGTGRLSTSGTTVHGH-GTAFMRELMPGDAVMITHPTTLMEETRIVKMVLSDSSMGISSAFSSDLVSTTAFRYITAPRIEETTEQKETKRKQGRDAEEKLAFGTYAGSG--GSKVVYRVKKAGVYGGYEIITADAGQEMSREELLQLRSKKKADRHC 720
            AE+ L    GTGR+ +SGTT+ G  GT F++EL  GDA++I HPT+LMEETRI++MVLSD S  +SS FS+DL+S+T+F YI AP+ E+  E   T +K+   ++EK AFGTYAG    G+++ YRVKK+GVYGGY++I   A    +REELL  R KKK DRHC
Sbjct:   71 AEDVLTKCKGTGRILSSGTTLMGQIGTKFLQELSVGDAIIIQHPTSLMEETRILRMVLSDVSASLSSPFSTDLISSTSFSYIKAPKDEDEQENASTLKKRILKSDEKNAFGTYAGGTEMGTELTYRVKKSGVYGGYQLIREKASAVRTREELLDFREKKKGDRHC 235          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5357.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5I8_9STRA1.230e-6265.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FV70_ECTSI9.820e-5454.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A485LKB6_9STRA2.830e-4857.99Aste57867_21986 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9YA44_9STRA5.490e-4861.73Niemann-Pick C1 protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2S051_9STRA6.960e-4861.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W4H648_9STRA2.070e-4757.31Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024UEL5_9STRA4.260e-4757.89Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S1XT62_9STRA5.760e-4753.94Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6G0XV17_9STRA4.970e-4657.32Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
F0WLZ1_9STRA1.410e-4554.55Uncharacterized protein AlNc14C150G7504 n=1 Tax=Al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5357contigP-wetherbeei_contig5357:2220..2945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FV70
PFAMsDUF1754
Model size726
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.61e-54
EggNOG OGs2A1XA@1|root,2RY1S@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_007330.1
Cds size726
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.1870239-CDS-P-wetherbeei_contig5357:2219..29451683186801.1870239-CDS-P-wetherbeei_contig5357:2219..2945Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5357 2220..2945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5357.2.1prot_P-wetherbeei_contig5357.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5357 2220..2945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5357.2.1

>prot_P-wetherbeei_contig5357.2.1 ID=prot_P-wetherbeei_contig5357.2.1|Name=mRNA_P-wetherbeei_contig5357.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=242bp
LSRATKQQQDPPIEAQAMVKGGRLIFKGGAPATASTVSKGKGKNVRRPRA
DSSGGAASRETAAAGASSSAGAVAATAQAEEDLRPVSGTGRLSTSGTTVH
GHGTAFMRELMPGDAVMITHPTTLMEETRIVKMVLSDSSMGISSAFSSDL
VSTTAFRYITAPRIEETTEQKETKRKQGRDAEEKLAFGTYAGSGGSKVVY
RVKKAGVYGGYEIITADAGQEMSREELLQLRSKKKADRHCY*
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mRNA from alignment at P-wetherbeei_contig5357:2220..2945-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5357.2.1 ID=mRNA_P-wetherbeei_contig5357.2.1|Name=mRNA_P-wetherbeei_contig5357.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=726bp|location=Sequence derived from alignment at P-wetherbeei_contig5357:2220..2945- (Phaeothamnion wetherbeei SAG_119_79)
CTTTCCCGTGCAACAAAACAACAGCAAGATCCTCCAATAGAAGCCCAAGC CATGGTGAAAGGAGGGCGCCTGATCTTCAAGGGCGGTGCGCCCGCCACGG CATCAACCGTGTCCAAGGGAAAGGGAAAGAACGTAAGGCGACCGCGAGCA GACTCGAGCGGCGGCGCAGCATCACGCGAAACCGCGGCGGCAGGAGCATC GTCTTCGGCTGGTGCGGTCGCTGCCACCGCGCAAGCTGAAGAGGACTTGC GGCCTGTAAGCGGGACCGGACGTCTTTCAACAAGCGGCACCACCGTGCAC GGGCATGGCACCGCGTTCATGCGGGAGCTCATGCCAGGCGACGCAGTCAT GATCACGCACCCGACAACGCTCATGGAGGAGACACGAATCGTCAAGATGG TGCTGAGCGATTCCAGCATGGGCATCAGCAGCGCCTTTTCTTCTGACCTG GTCTCAACGACAGCCTTCCGATACATCACGGCGCCCCGCATCGAGGAGAC GACGGAACAGAAGGAGACGAAGCGAAAGCAGGGTCGCGATGCCGAGGAGA AGCTGGCGTTCGGCACCTACGCTGGCAGCGGCGGCTCCAAAGTGGTCTAC CGAGTTAAGAAGGCTGGTGTCTACGGCGGCTACGAGATCATCACGGCCGA CGCGGGGCAAGAAATGAGCCGGGAGGAACTGCTCCAGCTGCGCTCGAAGA AGAAGGCCGACCGCCACTGCTACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5357:2220..2945-

>mRNA_P-wetherbeei_contig5357.2.1 ID=mRNA_P-wetherbeei_contig5357.2.1|Name=mRNA_P-wetherbeei_contig5357.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=726bp|location=Sequence derived from alignment at P-wetherbeei_contig5357:2220..2945- (Phaeothamnion wetherbeei SAG_119_79)
CTTTCCCGTGCAACAAAACAACAGCAAGATCCTCCAATAGAAGCCCAAGC
CATGGTGAAAGGAGGGCGCCTGATCTTCAAGGGCGGTGCGCCCGCCACGG
CATCAACCGTGTCCAAGGGAAAGGGAAAGAACGTAAGGCGACCGCGAGCA
GACTCGAGCGGCGGCGCAGCATCACGCGAAACCGCGGCGGCAGGAGCATC
GTCTTCGGCTGGTGCGGTCGCTGCCACCGCGCAAGCTGAAGAGGACTTGC
GGCCTGTAAGCGGGACCGGACGTCTTTCAACAAGCGGCACCACCGTGCAC
GGGCATGGCACCGCGTTCATGCGGGAGCTCATGCCAGGCGACGCAGTCAT
GATCACGCACCCGACAACGCTCATGGAGGAGACACGAATCGTCAAGATGG
TGCTGAGCGATTCCAGCATGGGCATCAGCAGCGCCTTTTCTTCTGACCTG
GTCTCAACGACAGCCTTCCGATACATCACGGCGCCCCGCATCGAGGAGAC
GACGGAACAGAAGGAGACGAAGCGAAAGCAGGGTCGCGATGCCGAGGAGA
AGCTGGCGTTCGGCACCTACGCTGGCAGCGGCGGCTCCAAAGTGGTCTAC
CGAGTTAAGAAGGCTGGTGTCTACGGCGGCTACGAGATCATCACGGCCGA
CGCGGGGCAAGAAATGAGCCGGGAGGAACTGCTCCAGCTGCGCTCGAAGA
AGAAGGCCGACCGCCACTGCTACTGA
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