mRNA_P-wetherbeei_contig5355.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5355.1.1 vs. uniprot
Match: A0A836C942_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C942_9STRA) HSP 1 Score: 137 bits (346), Expect = 2.370e-34 Identity = 85/224 (37.95%), Postives = 113/224 (50.45%), Query Frame = 1
Query: 4 VRLMLRSLTDMGHAGTVRALEAESGCKLETDDAAALQEVVQKGDWRRCMELLAAVEFSDPEGPEKARIFLLRQQYLELLEARCLDDALACLRTQLACAAALPPDE----------------------LHALAALIVCPDVRSLREASGWS------GTRAEPLREIKRLASPAQFVPSGRLEELVGQALEHQASLCAYHNMADDKLGLYEDHRCGSDLIPRSTT 591
VR++LRSLTDMG+ G RALE ESGC L AL+E V G W C+ L V+F +A +L+Q+Y+ELL A +++AL L +L+ P+ L ALAAL++CPD S+R +GWS R + ++ L P +P+GRLEELV QAL Q S C YHN L L EDH C +P T+
Sbjct: 22 VRVLLRSLTDMGYKGAARALEQESGCTLHVPTVRALREAVVGGHWDECLTALQGVQFKGEWSRARAIFQVLQQKYIELLLAARMEEALTVLHDELSLLCEHAPEHVESGNHQTEPELEPTDSTALMNLQALAALLLCPDEWSIRAKAGWSLSSSVSDEREALVCQLMTLMDPGMHIPAGRLEELVSQALALQCSKCPYHNTTLSHLNLCEDHACSLKELPIRTS 245
BLAST of mRNA_P-wetherbeei_contig5355.1.1 vs. uniprot
Match: A0A2G5BIZ4_COERN (WD40 repeat-like protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BIZ4_COERN) HSP 1 Score: 121 bits (303), Expect = 1.880e-28 Identity = 74/199 (37.19%), Postives = 104/199 (52.26%), Query Frame = 1
Query: 4 VRLMLRSLTDMGHAGTVRALEAESGCKLETDDAAALQEVVQKGDWRRCMELLAAVEFSDPEGPEKARIFLLRQQYLELLEARCLDDALACLRTQLACAAALPPD--ELHALAALIVCPDVRSLREASGWSGTRAEP----LREIKRLASPAQFVPSGRLEELVGQALEHQASLCAYHNMADDKLGLYEDHRCGSDLIPR 582
VRL+L+ L D G T L+ ESG LE + A + + G+W + E L + E A + RQQ+LELLEAR L AL L+ +L+ AL D +LH L++L++CP SLR A+ W G+ L ++ SP + VP R+E L QA+ HQ C+YH + GLY DH C S + P+
Sbjct: 77 VRLLLQELHDRGFVDTFTKLQQESGYTLENEPIAQFRASILAGEWLQVEEALQTIGIDTQEARNAALFLVKRQQFLELLEARKLKQALLVLQNELS---ALTDDVLQLHRLSSLLMCPSPESLRAAADWDGSNGRSRFLVLESLQTYISPGKMVPVHRMETLFTQAIAHQCEACSYH-VRPASQGLYVDHTCPSPVFPQ 271
BLAST of mRNA_P-wetherbeei_contig5355.1.1 vs. uniprot
Match: G7DU86_MIXOS (tRNA-intron lyase n=1 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7DU86_MIXOS) HSP 1 Score: 119 bits (299), Expect = 9.980e-28 Identity = 68/199 (34.17%), Postives = 103/199 (51.76%), Query Frame = 1
Query: 4 VRLMLRSLTDMGHAGTVRALEAESGCKLETDDAAALQEVVQKGDWRRCMELLAAVEFSDPEGPEKARIFLLRQQYLELLEARCLDDALACLRTQLACAAALPPDELHALAALIVCPDVRSLREASGWSG----TRAEPLREIKRLASPAQFVPSGRLEELVGQALEHQASLCAYHNMADDKLGLYEDHRCGSDLIPRST 588
VRL+L++L D G+ +AL ESG +E+ + V G W + LA D + R + Q+YLE+LEAR AL+ LR +LA P+ +H L++L++C D LR+ + W G +R L ++ P+ +P RLE+L+GQA +HQ C YH + +D+ LY DH C + P T
Sbjct: 1511 VRLLLQALQDSGYTNAAQALAEESGYDMESPTVTNFRAAVLSGSWDQVERSLAPYRSDDSTSAKAIRFIVSEQKYLEMLEARETKSALSVLRNELA-PLNYAPERIHVLSSLMMCSDPAELRQRASWDGAASSSRRLALERLQAYIPPSTMLPQRRLEQLIGQATQHQIDHCLYHCI-EDRPSLYADHHCDHSVFPDVT 1707
BLAST of mRNA_P-wetherbeei_contig5355.1.1 vs. uniprot
Match: A0A8J4EYU7_9CHLO (Uncharacterized protein n=5 Tax=Volvox TaxID=3066 RepID=A0A8J4EYU7_9CHLO) HSP 1 Score: 111 bits (278), Expect = 4.870e-25 Identity = 68/201 (33.83%), Postives = 106/201 (52.74%), Query Frame = 1
Query: 4 VRLMLRSLTDMGHAGTVRALEAESGCKLETDDAAALQEVVQKGDWRRCMELLAAVEFSDPEGPEKARIFLLRQQYLELLEARCLDDALACLRTQLACAAALPPDELHALAALIVCPDVRSLREASGWSGT----RAEPLREIKRLASPAQFVPSGRLEELVGQALEHQASLCAYHNMADDKLGLYEDHRCGSDLIPRSTTR 594
VRL+ ++L +G+ LE ++G +++ Q V G+W M LL + + + + AR +L+Q+YLE LE + L AL CLR ++A + +LH LAAL++CP + + W G R L ++ P +P GRLE LV QALE Q S C +HN A+ +L L+ D+ G + +P ST +
Sbjct: 33 VRLLEQALHRLGYTDVASLLEQKAGVQMQPPHVTDFQTAVMGGEWDAAMSLLPQLTAQE-DIIKDARFLILQQKYLEALERQDLGAALTCLRQEMA-PLGVHEQQLHQLAALLLCPGAGDVAARTFWLGGGAAHRGHLLSLLQAKLPPNLMIPEGRLEVLVEQALEAQMSRCPFHNAAESRLSLFSDYYAGLECLPTSTVQ 231
BLAST of mRNA_P-wetherbeei_contig5355.1.1 vs. uniprot
Match: A0A7S1TB57_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TB57_9RHOD) HSP 1 Score: 101 bits (252), Expect = 1.660e-21 Identity = 63/196 (32.14%), Postives = 100/196 (51.02%), Query Frame = 1
Query: 4 VRLMLRSLTDMGHAGTVRALEAESGCKLETDDAAALQEVVQKGDWRRCMELLAAVE-FSDPEGPEKARIFLLRQQYLELLEARCLDDALACLRTQLACAAALPPDELHALAALIVCPDVRSLREASGWSG--TRAEPLREIKRLASPAQFVPSGRLEELVGQALEHQASLCAYHNMADDKLGLYEDHRCGSDLIPR 582
VRL++++L D+G LE SG + + + L+ G W + ++L +E F KAR L RQ++LEL+E R D ALACL+ +LA + P+ LH L +++C + LR ++ W G R E +R + R P+ +P RL ++ + LEHQ + Y A + L ED + +PR
Sbjct: 183 VRLIVQALLDLGFREVADHLEQVSGVQALSPNIHNLRTAALAGRWDQVEQILPDIEAFKSESDARKARFTLYRQKFLELVEERRYDPALACLQKELAPNISDEPETLHKLTTMMMCSNPNELRRSASWEGKLARQEVMRNLHRFVLPSVLLPERRLLTILRRDLEHQRRMSLYPYTAQSECSLLEDLEFDIEKLPR 378
BLAST of mRNA_P-wetherbeei_contig5355.1.1 vs. uniprot
Match: UPI001E69704D (WD repeat-containing protein WDS homolog n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E69704D) HSP 1 Score: 92.4 bits (228), Expect = 2.320e-18 Identity = 62/199 (31.16%), Postives = 102/199 (51.26%), Query Frame = 1
Query: 4 VRLMLRSLTDMGHAGTVRALEAESGCKLETDDAAALQEVVQKGDWRRCMELLAAVEFSDPEGPEKARIFLLRQQYLELLEARCLDDALACLRTQLACAAALPPD--ELHALAALIVCPDVRSLREASGWSGTRAEPLREIKRLASPAQFVPSGRLEELVGQALEHQASLCAYHNMADDKLGLYEDHRCGSDLIPRSTTR 594
+R++L+SL +G+ T +LE ESG ++ + L+ V G+W C+ L ++ E E A + RQ +E L + AL LR +++ +LP D ++H+LA ++C L + R + L +++++ P VP GRLE LV + C YH+ A+ + LYEDH CG D P +TT+
Sbjct: 31 IRIILQSLYSLGYTKTASSLELESGVSYKSKEFQLLESHVFNGNWDDCVVFLNSIRDLLGESLEPALFLVFRQCVMEYLNRGEITLALDVLRKRVS---SLPVDRCKVHSLANALLC-----LNDGDVVCDLRGKLLVDLEKILPPPVSVPDGRLEHLVETTVTAWVDSCLYHSSANP-ISLYEDHHCGRDQFPTTTTQ 220
BLAST of mRNA_P-wetherbeei_contig5355.1.1 vs. uniprot
Match: A0A8J4CHH8_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CHH8_9CHLO) HSP 1 Score: 89.4 bits (220), Expect = 2.870e-17 Identity = 51/135 (37.78%), Postives = 75/135 (55.56%), Query Frame = 1
Query: 202 RIFLLRQQYLELLEARCLDDALACLRTQLACAAALPPDELHALAALIVCPDVRSLREASGWSGT----RAEPLREIKRLASPAQFVPSGRLEELVGQALEHQASLCAYHNMADDKLGLYEDHRCGSDLIPRSTTR 594
R +L+Q+YLE LE + L AL CLR ++A + +LH LAAL++CP + + W G R L ++ P +P GRLE LV QALE Q S C +HN ++ +L L+ D+ G + +P ST +
Sbjct: 38 RFLILQQKYLEALERQDLGSALTCLRHEMA-PLGVHEQQLHQLAALLLCPGTGDVAARTFWLGGGAAHRGHLLSLLQAKLPPNLMIPEGRLEVLVEQALEAQMSRCPFHNASESRLSLFSDYYAGLECLPTSTVQ 171
BLAST of mRNA_P-wetherbeei_contig5355.1.1 vs. uniprot
Match: A0A072VM11_MEDTR (Putative transcription factor WD40-like family n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072VM11_MEDTR) HSP 1 Score: 87.0 bits (214), Expect = 1.720e-16 Identity = 61/199 (30.65%), Postives = 101/199 (50.75%), Query Frame = 1
Query: 4 VRLMLRSLTDMGHAGTVRALEAESGCKLETDDAAALQEVVQKGDWRRCMELLAAVEFSDPEGPEKARIFLLRQQYLELLEARCLDDALACLRTQLACAAALPPD--ELHALAALIVCPDVRSLREASGWSGTRAEPLREIKRLASPAQFVPSGRLEELVGQALEHQASLCAYHNMADDKLGLYEDHRCGSDLIPRSTTR 594
+R++L+SL +G+ T LE+ESG ++++ L+ V G+W C+ L ++ E E A + RQ +E L+ AL LR +++ AL D ++H+LA +V +L + R + L ++++L P +P GRLE LV + C YH+ + + LYEDH CG D P +TT+
Sbjct: 21 IRIILQSLYSLGYTKTASLLESESGVSYKSNEFQLLESHVLNGNWEACVTFLNSITEILGESVESALFLVFRQTVMEYLKRGEDGLALDVLRKRVS---ALRVDRFKVHSLANSVV-----NLNDEVVEGDLRGKLLMDLEKLLPPPISIPDGRLEHLVETTVTAWVDSCLYHSSLNP-VSLYEDHSCGRDHFPTTTTQ 210
BLAST of mRNA_P-wetherbeei_contig5355.1.1 vs. uniprot
Match: A0A8K0JSK1_9TREE (Uncharacterized protein n=1 Tax=Filobasidium floriforme TaxID=5210 RepID=A0A8K0JSK1_9TREE) HSP 1 Score: 86.3 bits (212), Expect = 3.610e-16 Identity = 70/229 (30.57%), Postives = 105/229 (45.85%), Query Frame = 1
Query: 4 VRLMLRSLTDMGHAGTVRALEAESGCKLETDDAAALQEVVQKGDWRRCMELLAAVEFSDPEG----------------------------PEKARIFL-LRQQYLELLEARCLDDALACLRTQLACAAALPPDELHALAALIVCPDVRSLREASGWSG----TRAEPLREIKRLASPAQFVPSGRLEELVGQALEHQASLCAYHNMADDKLGLYEDHRCGSDLIPRSTT 591
VRLML++L D+G++ + LEAESG E A + ++ + G W + LL+ + PE P + IF+ LRQ+YLEL+EA AL LR ++A AA +LHAL+ L++C L + W G +R E L +++ +P RL L QA ++Q C YH+ + L DHRC ++ P T
Sbjct: 72 VRLMLQALRDIGYSQSAEVLEAESGYVQEPALAGSFRQAILGGRWSEAIHLLSDLGVVLPEDRGSGRKNTNSADLTFRNGSGSNSKKQDTPGRRAIFMVLRQKYLELIEAGQTVRALKVLRLEVA-PAATDTAKLHALSGLMMCMKKADLYAKAKWDGATGSSRQELLDDLQEFLPTGVIMPPKRLATLFDQARKYQEGNCVYHSGYPAET-LLSDHRCKREVFPTVAT 298
BLAST of mRNA_P-wetherbeei_contig5355.1.1 vs. uniprot
Match: A0A1Y1WCV0_9FUNG (WD40 repeat-like protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WCV0_9FUNG) HSP 1 Score: 83.6 bits (205), Expect = 3.060e-15 Identity = 61/187 (32.62%), Postives = 89/187 (47.59%), Query Frame = 1
Query: 61 LEAESGCKLETDDAAALQEVVQKGDWRRC----------------MELLAAVEFSDPEGPEKARIFLLRQQYLELLEARCLDDALACLRTQLACAAALPPD--ELHALAALIVCPDVRSLREASGWSG----TRAEPLREIKRLASPAQFVPSGRLEELVGQALEHQASLCAYHNMADDKLGLYEDH 555
L+ ESG LE D +E V G+W +L A+ S P P AR + RQQ+LELLEAR L AL L+ +L+ AL D +LH L++L++CP L AS W G +R + L ++ SP + VP+ R+E L Q++ Q + C +H ++ H
Sbjct: 47 LQRESGYTLEDDTVTQFRESVLSGEWAEVERGPGVYRRRGAVDAQCKLPTALAASPP--PHSARFTIKRQQFLELLEARRLKQALLVLQNELS---ALTDDIPQLHRLSSLLMCPSPADLYTASSWDGCQGRSRFQVLESLQAFISPRRMVPAHRMETLFKQSIRSQEANCEHHTSKGPAQPVHRPH 228 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5355.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5355.1.1 >prot_P-wetherbeei_contig5355.1.1 ID=prot_P-wetherbeei_contig5355.1.1|Name=mRNA_P-wetherbeei_contig5355.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=194bp MLRSLTDMGHAGTVRALEAESGCKLETDDAAALQEVVQKGDWRRCMELLAback to top mRNA from alignment at P-wetherbeei_contig5355:5..1227+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5355.1.1 ID=mRNA_P-wetherbeei_contig5355.1.1|Name=mRNA_P-wetherbeei_contig5355.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1223bp|location=Sequence derived from alignment at P-wetherbeei_contig5355:5..1227+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5355:5..1227+ >mRNA_P-wetherbeei_contig5355.1.1 ID=mRNA_P-wetherbeei_contig5355.1.1|Name=mRNA_P-wetherbeei_contig5355.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig5355:5..1227+ (Phaeothamnion wetherbeei SAG_119_79)back to top |