mRNA_P-wetherbeei_contig53540.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53540.1.1
Unique NamemRNA_P-wetherbeei_contig53540.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53540.1.1 vs. uniprot
Match: A0A3B9BFD1_9PROT (Thiamine phosphate synthase n=6 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9BFD1_9PROT)

HSP 1 Score: 156 bits (394), Expect = 2.470e-45
Identity = 87/167 (52.10%), Postives = 108/167 (64.67%), Query Frame = 1
Query:    4 RLHNPRDALLRLPAGSGFIFRHYEHGNREAMARTLLRLCRKRRIVFLLAGDWRMALRIDADGAHFPQGLAHQARAIRRVKPDAMVTVAAHGLRSMHRAHQFGADAILLSPVFATQSHPGAETLGPVRFAKLTRGARAPVIALGGIHANNARRLRGSGTAGIAGISGI 504
            RL  P+ A+  LP  +G IFRHY   +R A+   L  LC +R + FL+AGD  +AL + ADG H P+    +A AI+R  P   VTVAAH L ++ RA   GADA LLSPVF T+SHPGA TLG  RFA+L R A  PV ALGG++A N  RLRGSG  GIA I+ +
Sbjct:   14 RLPAPQQAIAALPREAGVIFRHYAVADRAALGAELRALCARRGLPFLVAGDVGLALALRADGVHLPEAHIMRAGAIKRRAPQLRVTVAAHSLPALIRARAAGADAALLSPVFPTESHPGAPTLGAHRFARLARAAGLPVYALGGVNAENVARLRGSGAFGIAAIAAL 180          
BLAST of mRNA_P-wetherbeei_contig53540.1.1 vs. uniprot
Match: A0A364P3Q6_9PROT (Thiamine phosphate synthase n=1 Tax=Magnetospirillum kuznetsovii TaxID=2053833 RepID=A0A364P3Q6_9PROT)

HSP 1 Score: 151 bits (382), Expect = 2.590e-43
Identity = 81/174 (46.55%), Postives = 112/174 (64.37%), Query Frame = 1
Query:    1 QRLHNPRDALLRLPAGSGFIFRHYEHGNREAMARTLLRLCRKRRIVFLLAGDWRMALRIDADGAHFPQGLAHQ-----ARAIRRVKPDAMVTVAAHGLRSMHRAHQFGADAILLSPVFATQSHPGAETLGPVRFAKLTRGARAPVIALGGIHANNARRLRGSGTAGIAGISGIV 507
            +RL +P  A+  L  GSG + RHY+H +R+A+A  +  L R++R++ L+AGDWR+A R+ A G H P+GLA +     A A RR K   +++VA H  R++ RA   GADA LLSP FAT SHPGA  +GPVRF   TR AR PV+ALGG++   A RL      G+A + G++
Sbjct:   30 ERLPDPLAAIAHLAPGSGVLLRHYDHPDRDALALAVAALARRKRLILLVAGDWRLAARLGARGLHLPEGLARRGVLAPALAWRRRKA-VLLSVACHSARALGRAKALGADAALLSPAFATASHPGARPIGPVRFGLWTRRARLPVLALGGMNGKTAMRLPQGSACGLAAVGGLL 202          
BLAST of mRNA_P-wetherbeei_contig53540.1.1 vs. uniprot
Match: A0A6J4FN37_9PROT (Thiamine monophosphate synthase n=1 Tax=Magnetospirillum sp. SS-4 TaxID=2681465 RepID=A0A6J4FN37_9PROT)

HSP 1 Score: 151 bits (381), Expect = 3.780e-43
Identity = 81/172 (47.09%), Postives = 114/172 (66.28%), Query Frame = 1
Query:    4 RLHNPRDALLRLPAGSGFIFRHYEHGNREAMARTLLRLCRKRRIVFLLAGDWRMALRIDADGAHFPQGLAHQ---ARAIRRVKP-DAMVTVAAHGLRSMHRAHQFGADAILLSPVFATQSHPGAETLGPVRFAKLTRGARAPVIALGGIHANNARRLRGSGTAGIAGISGIV 507
            RL +P  A++RLP G+G + RHY   +R+ +AR++  L R+RR+V L+AGDWR+A R+ ADG H P+GLA     A A+  ++  + +++VA H   ++ RA + GAD+ LLSP FAT+SH GA  +GPVRF   +R AR  VIALGG+    ARRL G   AG+A I G +
Sbjct:   31 RLPDPLPAMMRLPPGAGVLLRHYRSPDRQDLARSVAALARRRRLVLLVAGDWRLAARLGADGLHLPEGLARHGVLAPALGWLRRRNLLLSVACHSRSALGRAARLGADSALLSPAFATRSHAGATPIGPVRFGLWSRAARLAVIALGGVDGRGARRLPGGSAAGLAAIGGFL 202          
BLAST of mRNA_P-wetherbeei_contig53540.1.1 vs. uniprot
Match: A0A1G8DTU8_9PROT (Thiamine-phosphate pyrophosphorylase n=1 Tax=Roseospirillum parvum TaxID=83401 RepID=A0A1G8DTU8_9PROT)

HSP 1 Score: 148 bits (374), Expect = 4.190e-42
Identity = 79/168 (47.02%), Postives = 104/168 (61.90%), Query Frame = 1
Query:    4 RLHNPRDALLRLPAGSGFIFRHYEHGNREAMARTLLRLCRKRRIVFLLAGDWRMALRIDADGAHFPQGLAHQARA----IRRVKPDAMVTVAAHGLRSMHRAHQFGADAILLSPVFATQSHPGAETLGPVRFAKLTRGARAPVIALGGIHANNARRLRGSGTAGIAGI 495
            R  +P     RLPAG+G + RHY+   R  +AR L R+ R+RR+V L+A DWR+A R+ A G H P+GLA   R     + R +   ++TVAAHG R++ RA   GADA LL P   T SHPG   LGP+R A+L R +R PV+ALGGI A  ARRL  +   G+A +
Sbjct:   15 RSADPLPLAARLPAGTGLLLRHYDSPGRADLARALARVARRRRLVLLIAADWRLAARVGAQGVHLPEGLARHGRLAPLRLARRRHGWLLTVAAHGRRALARAQALGADAALLGPALPTASHPGQPALGPLRLARLVRHSRMPVLALGGIDARTARRLDAAPLIGLAAV 182          
BLAST of mRNA_P-wetherbeei_contig53540.1.1 vs. uniprot
Match: A0A521ZYH8_9PROT (Thiamine phosphate synthase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A521ZYH8_9PROT)

HSP 1 Score: 149 bits (377), Expect = 5.560e-42
Identity = 83/169 (49.11%), Postives = 107/169 (63.31%), Query Frame = 1
Query:    4 RLHNPRDALLRLPAGSGFIFRHYEHGNREAMARTLLRLCRKRRIVFLLAGDWRMALRIDADGAHFPQGLAHQ----ARAIRRVKPDAMVTVAAHGLRSMHRAHQFGADAILLSPVFATQSHPGAETLGPVRFAKLTRGARAPVIALGGIHANNARRLRGSGTAGIAGIS 498
            R+ +P  A+LRLP GSG I RH +     A+A  L+ LCR+RR++ L+AGDWR+A R+ ADG H P+ +A      A  + R +   ++T AAHGLR+M    +   DAILL+PVF T SHP   TLG VRF  L R    PV+ALGGI A   +RL  SG +GIAGIS
Sbjct:   77 RMEDPVAAVLRLPRGSGVILRHTDPARLRALAEILVPLCRRRRVMCLIAGDWRLAARLKADGVHLPERMARYGTVAATLLWRRQSGHVLTTAAHGLRAMVDGVRLKTDAILLAPVFTTASHPRTRTLGAVRFTALVRQVSCPVLALGGITAGTIKRLTASGASGIAGIS 245          
BLAST of mRNA_P-wetherbeei_contig53540.1.1 vs. uniprot
Match: A0A2E9Y9E7_9PROT (Thiamine phosphate synthase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E9Y9E7_9PROT)

HSP 1 Score: 148 bits (373), Expect = 6.290e-42
Identity = 81/168 (48.21%), Postives = 103/168 (61.31%), Query Frame = 1
Query:    4 RLHNPRDALLRLPAGSGFIFRHYEHGNREAMARTLLRLCRKRRIVFLLAGDWRMALRIDADGAHFPQGLAHQARAIRRVKPDAMVTVAAHGLRSMHRAHQFGADAILLSPVFATQSHPGAETLGPVRFAKLTRGARAPVIALGGIHANNARRLRGSGTAGIAGISGIV 507
            RL +P  A   LP G   I RHY+   RE + R L+ LCR R++  L+AGDWR+A +++A G H P+    +   + R KP  +VT AAH   ++ RA   GA A LLSPVF T SHPGA TLGP RFA+L R +  PV  LGGI+ +NA RL   G  GIA ISG+ 
Sbjct:   34 RLTDPLPAAASLPPGGAVILRHYDIAGREDLGRALMALCRARKLSLLVAGDWRLAWKLEAHGVHLPEWQTARPPVLPR-KPGWLVTAAAHSRPALLRAASLGAHAALLSPVFPTASHPGAHTLGPQRFARLARDSTLPVYGLGGINMDNAPRLSPCGAVGIAAISGLA 200          
BLAST of mRNA_P-wetherbeei_contig53540.1.1 vs. uniprot
Match: A0A8D5WEY4_9PROT (Thiamine-phosphate synthase n=1 Tax=Alphaproteobacteria bacterium SO-S41 TaxID=2829083 RepID=A0A8D5WEY4_9PROT)

HSP 1 Score: 147 bits (372), Expect = 8.410e-42
Identity = 79/160 (49.38%), Postives = 106/160 (66.25%), Query Frame = 1
Query:   25 ALLRLPAGSGFIFRHYEHGNREAMARTLLRLCRKRRIVFLLAGDWRMALRIDADGAHFPQGLAHQARAIRRVKPDAMVTVAAHGLRSMHRAHQFGADAILLSPVFATQSHPGAETLGPVRFAKLTRGARAPVIALGGIHANNARRLRGSGTAGIAGISGI 504
            A+  LP G+G IFRHY   +R  +ARTL  L  +R +VFL+AGD ++A  + ADG H P+ L H+A A+RR+ P  +VT AAHG+  +  A +   DA+L+SPVFAT SHPGA+TLG +RFA L   A  PVIALGG+  +   RL G+  +G A IS +
Sbjct:   25 AMRSLPHGAGVIFRHYNAPDRARLARTLRALAARRGLVFLVAGDVKLAAAVKADGFHAPEWLIHRATAVRRLLPHGLVTAAAHGVPGLVAAERAQVDAVLVSPVFATASHPGAQTLGVLRFAALAEQAAMPVIALGGMTPDRFARLTGTAVSGYAAISAL 184          
BLAST of mRNA_P-wetherbeei_contig53540.1.1 vs. uniprot
Match: A0A1W6CNQ1_9PROT (Thiamine phosphate synthase n=1 Tax=Magnetospirillum sp. ME-1 TaxID=1639348 RepID=A0A1W6CNQ1_9PROT)

HSP 1 Score: 145 bits (366), Expect = 6.210e-41
Identity = 84/173 (48.55%), Postives = 108/173 (62.43%), Query Frame = 1
Query:    1 QRLHNPRDALLRLPAGSGFIFRHYEHGNREAMARTLLRLCRKRRIVFLLAGDWRMALRIDADGAHFPQGLAHQ---ARAIRRV-KPDAMVTVAAHGLRSMHRAHQFGADAILLSPVFATQSHPGAETLGPVRFAKLTRGARAPVIALGGIHANNARRLRGSGTAGIAGISGIV 507
            QRL +PR A+ RLP G+G I RHY    R+ M R +  L R+RR+V L+AGDWR+A  + ADG H P+G+A     A A+  V +   ++ VA HG  ++ RA   GAD  LLSPVF T SHPGA T+GPVRF    + AR PVIALGG+     R L G+   G+A I G+V
Sbjct:   28 QRLPDPRAAMGRLPPGAGVILRHYGSERRQPMVREVAALARRRRLVLLVAGDWRLAAELGADGLHLPEGMARHGLLAGALGWVWRRRRLLLVACHGPMALGRARDLGADGALLSPVFPTASHPGAATIGPVRFGLWAQRARIPVIALGGMTRQRLRHLPGA--VGMAAIGGLV 198          
BLAST of mRNA_P-wetherbeei_contig53540.1.1 vs. uniprot
Match: M2Z857_9PROT (Thiamine monophosphate synthase n=1 Tax=Magnetospirillum caucaseum TaxID=1244869 RepID=M2Z857_9PROT)

HSP 1 Score: 144 bits (364), Expect = 1.170e-40
Identity = 81/174 (46.55%), Postives = 106/174 (60.92%), Query Frame = 1
Query:    4 RLHNPRDALLRLPAGSGFIFRHYEHGNREAMARTLLRLCRKRRIVFLLAGDWRMALRIDADGAHFPQGLAHQARA------IRRVKPDAMVTVAAHGLRSMHRAHQFGADAILLSPVFATQSHPGAETLGPVRFAKLTRGARAPVIALGGIHANNARRLRGSGTAGIAGISGIV 507
            RL +P  A+ RLP G+G I RHY    R  +AR + RL R+RR+V ++AGDWR+A R+ ADG H P+GLA           +RR +   ++ VA HG+ ++ RA    ADA LLSPVF T+SHPGA T+GP+RF    R A  PVIALGG+     RRL     AG+A I  + 
Sbjct:   24 RLPDPLAAMARLPPGAGVILRHYAGERRAGLARDVARLARRRRLVLVVAGDWRLAARLGADGLHLPEGLARHGLLAGALGWVRRRRR--LLLVACHGMAALARARILDADAALLSPVFPTRSHPGAATIGPLRFGLWVRRAGLPVIALGGMSRRRLRRLPRGAAAGMAAIGSLT 195          
BLAST of mRNA_P-wetherbeei_contig53540.1.1 vs. uniprot
Match: A0A0U5ME38_9PROT (Putative Thiamine monophosphate synthase n=1 Tax=Magnetospirillum sp. XM-1 TaxID=1663591 RepID=A0A0U5ME38_9PROT)

HSP 1 Score: 143 bits (361), Expect = 3.530e-40
Identity = 80/173 (46.24%), Postives = 110/173 (63.58%), Query Frame = 1
Query:    1 QRLHNPRDALLRLPAGSGFIFRHYEHGNREAMARTLLRLCRKRRIVFLLAGDWRMALRIDADGAHFPQGLAHQ---ARAIRRVKPDA-MVTVAAHGLRSMHRAHQFGADAILLSPVFATQSHPGAETLGPVRFAKLTRGARAPVIALGGIHANNARRLRGSGTAGIAGISGIV 507
            QRL +PR A+ RLP G+G I RHY    R++++R +  L R+RR+V L+AGDWR+A  + A G H P+G+A     A A+  V+    ++ VA HG  ++ RA   GAD +LLSPV+ T SHPGA T+GPVRF    + +  PVIALGG+     R L G+  AG+A I G+V
Sbjct:   28 QRLPDPRAAMARLPPGAGIILRHYASERRQSLSREVAALARRRRLVLLVAGDWRLAAELGASGLHLPEGMARHGMLAGALGWVRRRGRLLLVACHGPMALGRARDLGADGVLLSPVYPTASHPGAATIGPVRFGLWAQRSPIPVIALGGMTRRRLRHLPGA--AGMAAIGGLV 198          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53540.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B9BFD1_9PROT2.470e-4552.10Thiamine phosphate synthase n=6 Tax=Alphaproteobac... [more]
A0A364P3Q6_9PROT2.590e-4346.55Thiamine phosphate synthase n=1 Tax=Magnetospirill... [more]
A0A6J4FN37_9PROT3.780e-4347.09Thiamine monophosphate synthase n=1 Tax=Magnetospi... [more]
A0A1G8DTU8_9PROT4.190e-4247.02Thiamine-phosphate pyrophosphorylase n=1 Tax=Roseo... [more]
A0A521ZYH8_9PROT5.560e-4249.11Thiamine phosphate synthase n=1 Tax=Rhodospirillac... [more]
A0A2E9Y9E7_9PROT6.290e-4248.21Thiamine phosphate synthase n=1 Tax=Rhodospirillac... [more]
A0A8D5WEY4_9PROT8.410e-4249.38Thiamine-phosphate synthase n=1 Tax=Alphaproteobac... [more]
A0A1W6CNQ1_9PROT6.210e-4148.55Thiamine phosphate synthase n=1 Tax=Magnetospirill... [more]
M2Z857_9PROT1.170e-4046.55Thiamine monophosphate synthase n=1 Tax=Magnetospi... [more]
A0A0U5ME38_9PROT3.530e-4046.24Putative Thiamine monophosphate synthase n=1 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53540contigP-wetherbeei_contig53540:27..536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1244869.H261_07693
PFAMsTMP-TENI
Model size510
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00224,RC03255,RC03397
KEGG koko:K00788
KEGG ReactionR03223,R10712
KEGG Pathwayko00730,ko01100,map00730,map01100
KEGG ModuleM00127
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.93e-41
EggNOG OGsCOG0352@1|root,COG0352@2|Bacteria,1MZ0K@1224|Proteobacteria,2UA7U@28211|Alphaproteobacteria,2JT3I@204441|Rhodospirillales
EC2.5.1.3
DescriptionThiamine monophosphate synthase
Cds size510
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186800.7364175-CDS-P-wetherbeei_contig53540:26..5361683186800.7364175-CDS-P-wetherbeei_contig53540:26..536Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53540 27..536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53540.1.1prot_P-wetherbeei_contig53540.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53540 27..536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53540.1.1

>prot_P-wetherbeei_contig53540.1.1 ID=prot_P-wetherbeei_contig53540.1.1|Name=mRNA_P-wetherbeei_contig53540.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
QRLHNPRDALLRLPAGSGFIFRHYEHGNREAMARTLLRLCRKRRIVFLLA
GDWRMALRIDADGAHFPQGLAHQARAIRRVKPDAMVTVAAHGLRSMHRAH
QFGADAILLSPVFATQSHPGAETLGPVRFAKLTRGARAPVIALGGIHANN
ARRLRGSGTAGIAGISGIV*
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mRNA from alignment at P-wetherbeei_contig53540:27..536-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53540.1.1 ID=mRNA_P-wetherbeei_contig53540.1.1|Name=mRNA_P-wetherbeei_contig53540.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig53540:27..536- (Phaeothamnion wetherbeei SAG_119_79)
CAACGCCTGCATAATCCCCGTGACGCCCTATTGCGTCTGCCCGCAGGATC GGGTTTTATTTTTCGCCATTATGAGCATGGCAATCGCGAGGCGATGGCGC GGACCCTGCTACGGCTGTGCCGGAAACGCCGCATTGTGTTTCTGCTGGCC GGGGATTGGCGCATGGCGTTGCGCATAGATGCAGACGGCGCGCATTTTCC GCAAGGCCTGGCGCATCAGGCACGCGCGATTCGCAGGGTAAAACCCGATG CCATGGTGACGGTGGCCGCCCATGGTTTGCGCAGCATGCATCGCGCCCAT CAGTTTGGCGCAGACGCCATACTGCTATCGCCGGTATTCGCCACCCAAAG CCATCCGGGCGCGGAAACGCTGGGGCCTGTTCGATTTGCGAAACTAACCC GTGGCGCGCGCGCGCCGGTCATTGCGCTGGGCGGCATTCATGCAAACAAT GCCCGCCGCCTGCGGGGCAGCGGGACGGCAGGCATCGCCGGGATCAGCGG GATTGTTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53540:27..536-

>mRNA_P-wetherbeei_contig53540.1.1 ID=mRNA_P-wetherbeei_contig53540.1.1|Name=mRNA_P-wetherbeei_contig53540.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig53540:27..536- (Phaeothamnion wetherbeei SAG_119_79)
CAACGCCTGCATAATCCCCGTGACGCCCTATTGCGTCTGCCCGCAGGATC
GGGTTTTATTTTTCGCCATTATGAGCATGGCAATCGCGAGGCGATGGCGC
GGACCCTGCTACGGCTGTGCCGGAAACGCCGCATTGTGTTTCTGCTGGCC
GGGGATTGGCGCATGGCGTTGCGCATAGATGCAGACGGCGCGCATTTTCC
GCAAGGCCTGGCGCATCAGGCACGCGCGATTCGCAGGGTAAAACCCGATG
CCATGGTGACGGTGGCCGCCCATGGTTTGCGCAGCATGCATCGCGCCCAT
CAGTTTGGCGCAGACGCCATACTGCTATCGCCGGTATTCGCCACCCAAAG
CCATCCGGGCGCGGAAACGCTGGGGCCTGTTCGATTTGCGAAACTAACCC
GTGGCGCGCGCGCGCCGGTCATTGCGCTGGGCGGCATTCATGCAAACAAT
GCCCGCCGCCTGCGGGGCAGCGGGACGGCAGGCATCGCCGGGATCAGCGG
GATTGTTTAG
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