mRNA_P-wetherbeei_contig53539.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53539.1.1
Unique NamemRNA_P-wetherbeei_contig53539.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53539.1.1 vs. uniprot
Match: A0A7W0X146_9PROT (EF-hand domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7W0X146_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 6.010e-10
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:   79 LLVASLAPLAYADDRGDYNARAAASLAELFRTLDRNTDGRLTRAEVTGDLNMEPRFDDXXXXXXXXXXXQELEDYVVLRYGMARRP 336
            +L+A     A ADD+ +Y+ RAAA  A LF++LDR+ DG +TR E  G+LN  PRFD             EL+ Y+  +YG+   P
Sbjct:   13 VLLAVCVSSAAADDKLEYDRRAAARDAMLFQSLDRDADGTVTRLESQGNLNFGPRFDAMDINRDGVVTTAELQRYIEQQYGVRPNP 98
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BLAST of mRNA_P-wetherbeei_contig53539.1.1 vs. uniprot
Match: A0A1F4D3M7_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4D3M7_9PROT)

HSP 1 Score: 60.5 bits (145), Expect = 1.520e-9
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:   67 TWVCLLVASLAPLAYADDRGDYNARAAASLAELFRTLDRNTDGRLTRAEVTGDLNMEPRFDDXXXXXXXXXXXQELEDYVVLRYGMA 327
            T V LL+A ++    ADDR ++N RAAA+    FR LD N DGRLT+ E   DLN  PRF D XXXXXXXXXX E+  Y+   YG++
Sbjct:   20 TIVTLLLAVVSWSVTADDRAEFNRRAAAADMTAFRQLDLNGDGRLTQDEAKHDLNFGPRFGDIXXXXXXXXXXXEMRRYIEQTYGVS 106
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53539.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7W0X146_9PROT6.010e-1040.70EF-hand domain-containing protein n=1 Tax=Betaprot... [more]
A0A1F4D3M7_9PROT1.520e-952.87Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53539contigP-wetherbeei_contig53539:9..347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size339
Hectar predicted targeting categorysignal peptide
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186800.7002487-CDS-P-wetherbeei_contig53539:8..3471683186800.7002487-CDS-P-wetherbeei_contig53539:8..347Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53539 9..347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53539.1.1prot_P-wetherbeei_contig53539.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53539 9..347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53539.1.1

>prot_P-wetherbeei_contig53539.1.1 ID=prot_P-wetherbeei_contig53539.1.1|Name=mRNA_P-wetherbeei_contig53539.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
LPSIGAGWNPIVDKGACMSRRGTWVCLLVASLAPLAYADDRGDYNARAAA
SLAELFRTLDRNTDGRLTRAEVTGDLNMEPRFDDLDGNRDGVITRQELED
YVVLRYGMARRP*
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mRNA from alignment at P-wetherbeei_contig53539:9..347-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53539.1.1 ID=mRNA_P-wetherbeei_contig53539.1.1|Name=mRNA_P-wetherbeei_contig53539.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig53539:9..347- (Phaeothamnion wetherbeei SAG_119_79)
TTGCCGTCCATTGGTGCAGGCTGGAACCCTATTGTTGATAAGGGAGCCTG
TATGTCGAGACGGGGAACGTGGGTTTGTCTGCTTGTCGCCTCGCTTGCGC
CGCTCGCATACGCGGACGATAGGGGAGACTACAACGCGCGTGCCGCGGCC
AGCCTCGCCGAATTGTTCCGGACTCTGGATCGCAACACCGACGGACGACT
GACCCGCGCGGAAGTCACGGGTGATCTCAACATGGAGCCGCGCTTCGACG
ACCTGGATGGCAATCGCGACGGCGTCATTACCCGGCAGGAACTCGAAGAC
TATGTCGTTCTGCGCTATGGGATGGCGCGCCGCCCGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53539:9..347-

>mRNA_P-wetherbeei_contig53539.1.1 ID=mRNA_P-wetherbeei_contig53539.1.1|Name=mRNA_P-wetherbeei_contig53539.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig53539:9..347- (Phaeothamnion wetherbeei SAG_119_79)
TTGCCGTCCATTGGTGCAGGCTGGAACCCTATTGTTGATAAGGGAGCCTG
TATGTCGAGACGGGGAACGTGGGTTTGTCTGCTTGTCGCCTCGCTTGCGC
CGCTCGCATACGCGGACGATAGGGGAGACTACAACGCGCGTGCCGCGGCC
AGCCTCGCCGAATTGTTCCGGACTCTGGATCGCAACACCGACGGACGACT
GACCCGCGCGGAAGTCACGGGTGATCTCAACATGGAGCCGCGCTTCGACG
ACCTGGATGGCAATCGCGACGGCGTCATTACCCGGCAGGAACTCGAAGAC
TATGTCGTTCTGCGCTATGGGATGGCGCGCCGCCCGTAA
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