mRNA_P-wetherbeei_contig5351.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: UPI0009E56063 (la-related protein 1B-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E56063) HSP 1 Score: 78.6 bits (192), Expect = 1.890e-15 Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 1
Query: 10 RSLCFRQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLE 204
R+L +Q+EYYFSA+NLCKDL+LR KMD+NG+VP+ +I FNRI+ +T S + +A+ PS LE
Sbjct: 319 RTLILKQIEYYFSADNLCKDLFLRSKMDSNGWVPINLIATFNRIKQLTDSTPFILDAIRPSNVLE 383
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: A0A2K1JW63_PHYPA (HTH La-type RNA-binding domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JW63_PHYPA) HSP 1 Score: 77.4 bits (189), Expect = 5.360e-15 Identity = 32/67 (47.76%), Postives = 50/67 (74.63%), Query Frame = 1
Query: 4 PSRSLCFRQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLE 204
P R++ +Q+EYYFS +NLCKD++LR KMD+NGF+P+ +I +FNR+R +T + + +AL S +E
Sbjct: 401 PLRTMLVKQIEYYFSMDNLCKDIFLRSKMDSNGFIPISIIASFNRVRQLTEDSALILDALQDSSLIE 467
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: A0A1Y1I697_KLENI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I697_KLENI) HSP 1 Score: 74.7 bits (182), Expect = 4.770e-14 Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1
Query: 10 RSLCFRQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLEL 207
R L +Q+EYYFS ENLC+D++LR KMD G++PL VI FNR+R +T + EAL S +EL
Sbjct: 650 RQLIIQQIEYYFSIENLCRDIFLRSKMDEEGYIPLTVIAGFNRVRMLTADPAMILEALKDSPAVEL 715
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: A0A388LTI4_CHABU (HTH La-type RNA-binding domain-containing protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388LTI4_CHABU) HSP 1 Score: 74.7 bits (182), Expect = 4.780e-14 Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 1 LPSRSLCFRQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLE 204
LP R+ +Q+EYYFS ENLC+D+YLR +MD GF+P+ VI AFNR++ +T + EAL S +E
Sbjct: 709 LPLRARISKQIEYYFSIENLCRDIYLRQQMDEQGFIPVSVIAAFNRVKMLTVDVSVILEALADSSVVE 776
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: A0A7S1X436_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X436_9CHLO) HSP 1 Score: 74.3 bits (181), Expect = 6.400e-14 Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query: 25 RQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLE 204
+Q+EYYFS ENLCKD++LR KMD +GF+PL VI +FNR+R +T + + EAL S+ +E
Sbjct: 468 KQIEYYFSVENLCKDIFLRSKMDEDGFIPLAVIASFNRVRMLTPDPLIIVEALEDSETVE 527
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: A0A7I4EAB6_PHYPA (HTH La-type RNA-binding domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4EAB6_PHYPA) HSP 1 Score: 73.9 bits (180), Expect = 8.870e-14 Identity = 33/67 (49.25%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 4 PSRSLCFRQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLE 204
P R++ +Q+EYYFS +NLCKD++LR KMD++GF+P+ VI FNR+R +T A + +AL S +E
Sbjct: 408 PLRAMLVKQIEYYFSMDNLCKDIFLRSKMDSDGFIPINVIANFNRVRQLTEDASLILDALQNSSLVE 474
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: A0A2I0X899_9ASPA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0X899_9ASPA) HSP 1 Score: 73.2 bits (178), Expect = 1.550e-13 Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 10 RSLCFRQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLE 204
R+L +Q+EYYFS+ENLC DL+LR MD NG+VP+ +I FNRI+ +T S + +A+ PS LE
Sbjct: 318 RTLILKQIEYYFSSENLCSDLFLRSNMDNNGWVPIDLIAKFNRIKLLTDSIPFILDAIRPSDVLE 382
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: UPI001C4A94FF (la-related protein 1B-like n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4A94FF) HSP 1 Score: 72.4 bits (176), Expect = 3.000e-13 Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 1
Query: 25 RQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLEL 207
RQ+EYYFS +NLCKD++LRGKMD G+VP+ +I FN ++ VT S + +AL S KLE+
Sbjct: 328 RQIEYYFSVDNLCKDIFLRGKMDDQGWVPVSLIATFNMVKRVTTSTREILDALRDSTKLEI 388
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: A0A7S0IEJ5_MICPS (Hypothetical protein n=4 Tax=Micromonas TaxID=38832 RepID=A0A7S0IEJ5_MICPS) HSP 1 Score: 72.4 bits (176), Expect = 3.050e-13 Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query: 25 RQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLE 204
+QVEYYFS ENLCKDL+LR +MDA G++PLPVI FNRIR +T + EA+ S +E
Sbjct: 101 QQVEYYFSVENLCKDLFLRQRMDAEGWIPLPVIAGFNRIRMMTPEPSVVLEAIQGSAVVE 160
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: C1N9K3_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N9K3_MICPC) HSP 1 Score: 66.2 bits (160), Expect = 1.460e-12 Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 28 QVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLE 204
QVEYYFS ENLCKD++LR +MD G++P+P I FNRIR +T + EA+ S +E
Sbjct: 39 QVEYYFSVENLCKDVFLRERMDDEGYIPMPFIANFNRIRMMTPEPSVVLEAISGSAAVE 97 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5351.1.1 >prot_P-wetherbeei_contig5351.1.1 ID=prot_P-wetherbeei_contig5351.1.1|Name=mRNA_P-wetherbeei_contig5351.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp LPSRSLCFRQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVback to top mRNA from alignment at P-wetherbeei_contig5351:3685..3891- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5351.1.1 ID=mRNA_P-wetherbeei_contig5351.1.1|Name=mRNA_P-wetherbeei_contig5351.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig5351:3685..3891- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5351:3685..3891- >mRNA_P-wetherbeei_contig5351.1.1 ID=mRNA_P-wetherbeei_contig5351.1.1|Name=mRNA_P-wetherbeei_contig5351.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig5351:3685..3891- (Phaeothamnion wetherbeei SAG_119_79)back to top |