mRNA_P-wetherbeei_contig53503.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53503.1.1
Unique NamemRNA_P-wetherbeei_contig53503.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53503.1.1 vs. uniprot
Match: A0A2W1A875_9CHLR (Component of the Tol biopolymer transport system n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W1A875_9CHLR)

HSP 1 Score: 65.1 bits (157), Expect = 2.180e-9
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 SDEAFPTWSADGTQIAFESYRDGNLEIYVMDIDGSGAVNISNDAGDD 141
            S+ A P WS DGTQIAF++ RDGN EIYVM+ DGSGAVN+S + G D
Sbjct:  284 SNYAQPAWSPDGTQIAFDTKRDGNFEIYVMNADGSGAVNLSQNPGAD 330
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BLAST of mRNA_P-wetherbeei_contig53503.1.1 vs. uniprot
Match: X0TSS2_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0TSS2_9ZZZZ)

HSP 1 Score: 57.0 bits (136), Expect = 3.540e-8
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   16 PTWSADGTQIAFESYRDGNLEIYVMDIDGSGAVNISNDAGDD 141
            P+WSADG++IAF S  DGNLEIYVMD DGS    ++N+  +D
Sbjct:   12 PSWSADGSKIAFSSGHDGNLEIYVMDADGSNPTRLTNNPAED 53
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BLAST of mRNA_P-wetherbeei_contig53503.1.1 vs. uniprot
Match: A0A3C0EFA7_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A3C0EFA7_9CHLR)

HSP 1 Score: 57.0 bits (136), Expect = 4.540e-7
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 SDEAFPTWSADGTQIAFESYRDGNLEIYVMDIDGSGAVNISN 126
            S +  P WS DG +IAF S RDGN EIYVM+ DG+G VN++N
Sbjct:  101 STDVHPAWSPDGAKIAFTSTRDGNSEIYVMNADGTGVVNLTN 142
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BLAST of mRNA_P-wetherbeei_contig53503.1.1 vs. uniprot
Match: A0A800D602_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A800D602_9CHLR)

HSP 1 Score: 58.2 bits (139), Expect = 6.030e-7
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   16 PTWSADGTQIAFESYRDGNLEIYVMDIDGSGAVNISND--AGD 138
            P WS DGT+IAFESYR G+L+IY+M+ DGS  VN++ D  AGD
Sbjct:   30 PAWSPDGTRIAFESYRAGDLDIYIMEADGSNPVNLTEDEPAGD 72
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BLAST of mRNA_P-wetherbeei_contig53503.1.1 vs. uniprot
Match: A0A8J7XQK5_9EURY (PD40 domain-containing protein n=1 Tax=Theionarchaea archaeon TaxID=2747605 RepID=A0A8J7XQK5_9EURY)

HSP 1 Score: 55.5 bits (132), Expect = 1.300e-6
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:   16 PTWSADGTQIAFESYRDGNLEIYVMDIDGS 105
            PTWS DGT+IAF SYRDGN +IYVMD DGS
Sbjct:   13 PTWSPDGTKIAFSSYRDGNDDIYVMDTDGS 42
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BLAST of mRNA_P-wetherbeei_contig53503.1.1 vs. uniprot
Match: A0A6N8WYM2_9BACT (Uncharacterized protein n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N8WYM2_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 2.200e-6
Identity = 27/42 (64.29%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   16 PTWSADGTQIAFESYRDGNLEIYVMDIDGSGAVNISNDAGDD 141
            P WS DG QIAFES RD N EIYVM+ DGSG    +N A DD
Sbjct:  406 PAWSPDGAQIAFESNRDINFEIYVMNADGSGVARRTNSANDD 447
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BLAST of mRNA_P-wetherbeei_contig53503.1.1 vs. uniprot
Match: A0A382UHJ3_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382UHJ3_9ZZZZ)

HSP 1 Score: 52.8 bits (125), Expect = 2.580e-6
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   16 PTWSADGTQIAFESYRDGNLEIYVMDIDGSGAVNISNDAGDD 141
            P+WS DGT+IAF S RD N EIYVMD  G   VN++N+   D
Sbjct:    8 PSWSPDGTKIAFSSKRDDNWEIYVMDASGQNQVNLTNNPAKD 49
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BLAST of mRNA_P-wetherbeei_contig53503.1.1 vs. uniprot
Match: A0A3M1QQM7_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1QQM7_9CHLR)

HSP 1 Score: 55.8 bits (133), Expect = 3.090e-6
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   16 PTWSADGTQIAFESYRDGNLEIYVMDIDGSGAVNISN 126
            P+WS DG QI F+S RDGNLE+YVM+ DGS   N++N
Sbjct:  161 PSWSPDGAQIVFQSGRDGNLEVYVMNADGSDVTNLTN 197
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BLAST of mRNA_P-wetherbeei_contig53503.1.1 vs. uniprot
Match: A0A7Z9UWL8_9BACT (Uncharacterized protein n=3 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A7Z9UWL8_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 3.340e-6
Identity = 25/34 (73.53%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:   16 PTWSADGTQIAFESYRDGNLEIYVMDIDGSGAVN 117
            P+WS DGT+IAF S RDGN EIYVMDIDG   VN
Sbjct:  222 PSWSPDGTKIAFSSKRDGNWEIYVMDIDGQNQVN 255
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BLAST of mRNA_P-wetherbeei_contig53503.1.1 vs. uniprot
Match: A0A7C7UC73_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7UC73_9DELT)

HSP 1 Score: 55.1 bits (131), Expect = 6.520e-6
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 SDEAFPTWSADGTQIAFESYRDGNLEIYVMDIDGSGAVNISNDAGDDS 144
            SD+A P WS DG+QI FES+RDG  +IY+M+ DGS   NI+N+   D+
Sbjct:  324 SDKA-PAWSPDGSQITFESFRDGVWQIYIMNADGSSPTNITNNPAQDA 370
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53503.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2W1A875_9CHLR2.180e-965.96Component of the Tol biopolymer transport system n... [more]
X0TSS2_9ZZZZ3.540e-859.52Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A3C0EFA7_9CHLR4.540e-759.52Uncharacterized protein (Fragment) n=1 Tax=Dehaloc... [more]
A0A800D602_9CHLR6.030e-762.79Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
A0A8J7XQK5_9EURY1.300e-680.00PD40 domain-containing protein n=1 Tax=Theionarcha... [more]
A0A6N8WYM2_9BACT2.200e-664.29Uncharacterized protein n=3 Tax=Gemmatimonadetes b... [more]
A0A382UHJ3_9ZZZZ2.580e-657.14Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A3M1QQM7_9CHLR3.090e-662.16Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A7Z9UWL8_9BACT3.340e-673.53Uncharacterized protein n=3 Tax=Candidatus Poribac... [more]
A0A7C7UC73_9DELT6.520e-654.17Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53503contigP-wetherbeei_contig53503:3..477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123508.JH636442_gene4208
PFAMsPD40,PDZ_2,Peptidase_M28
Model size475
Max annot lvl203682|Planctomycetes
KEGG koko:K03641
KEGG TC2.C.1.2
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000233
EggNOG OGsCOG0823@1|root,COG0823@2|Bacteria,2IXGY@203682|Planctomycetes
DescriptionPeriplasmic component of the Tol biopolymer transport
Cds size354
COG categoryU
BRITEko00000,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186800.307738-UTR-P-wetherbeei_contig53503:2..891683186800.307738-UTR-P-wetherbeei_contig53503:2..89Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53503 3..89 +
1683186800.3250356-UTR-P-wetherbeei_contig53503:443..4771683186800.3250356-UTR-P-wetherbeei_contig53503:443..477Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53503 444..477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186800.317106-CDS-P-wetherbeei_contig53503:89..4431683186800.317106-CDS-P-wetherbeei_contig53503:89..443Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53503 90..443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53503.1.1prot_P-wetherbeei_contig53503.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53503 90..443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53503.1.1

>prot_P-wetherbeei_contig53503.1.1 ID=prot_P-wetherbeei_contig53503.1.1|Name=mRNA_P-wetherbeei_contig53503.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
MDIDGSGAVNISNDAGDDSGARWSPEGTQLAFESNRSGESRLWLASADGT
GAAPLLGEVSAAAGALDADPTWSPDGTQIAFISDRDGNAEVYVYTVADGT
IVRITDDPGFDFSLDWR*
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mRNA from alignment at P-wetherbeei_contig53503:3..477+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53503.1.1 ID=mRNA_P-wetherbeei_contig53503.1.1|Name=mRNA_P-wetherbeei_contig53503.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=475bp|location=Sequence derived from alignment at P-wetherbeei_contig53503:3..477+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGACGAAGCCTTCCCGACATGGTCGGCGGATGGAACCCAGATCGCCTT
CGAGTCCTACCGAGACGGCAACCTCGAGATCTACGTGATGGACATCGACG
GTTCCGGCGCCGTCAACATCTCCAACGACGCAGGCGACGACAGCGGGGCG
AGATGGTCACCTGAGGGGACGCAACTCGCGTTCGAGTCGAACCGCTCCGG
CGAGAGCCGGCTGTGGCTGGCCAGTGCGGACGGCACCGGCGCAGCACCGC
TGCTCGGCGAGGTTTCGGCAGCGGCCGGAGCACTCGACGCCGACCCCACC
TGGTCACCGGATGGCACGCAGATCGCCTTTATCAGCGATCGCGACGGCAA
CGCCGAGGTCTACGTCTACACCGTCGCCGATGGAACGATCGTCCGGATCA
CCGACGATCCGGGCTTCGACTTCAGCCTCGACTGGCGCTGACGCACGATC
GGTCCGCCATCGGTCACTCATCACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53503:3..477+

>mRNA_P-wetherbeei_contig53503.1.1 ID=mRNA_P-wetherbeei_contig53503.1.1|Name=mRNA_P-wetherbeei_contig53503.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig53503:3..477+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACATCGACGGTTCCGGCGCCGTCAACATCTCCAACGACGCAGGCGA
CGACAGCGGGGCGAGATGGTCACCTGAGGGGACGCAACTCGCGTTCGAGT
CGAACCGCTCCGGCGAGAGCCGGCTGTGGCTGGCCAGTGCGGACGGCACC
GGCGCAGCACCGCTGCTCGGCGAGGTTTCGGCAGCGGCCGGAGCACTCGA
CGCCGACCCCACCTGGTCACCGGATGGCACGCAGATCGCCTTTATCAGCG
ATCGCGACGGCAACGCCGAGGTCTACGTCTACACCGTCGCCGATGGAACG
ATCGTCCGGATCACCGACGATCCGGGCTTCGACTTCAGCCTCGACTGGCG
CTGA
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