mRNA_P-wetherbeei_contig53492.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53492.1.1
Unique NamemRNA_P-wetherbeei_contig53492.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53492.1.1 vs. uniprot
Match: A0A3D5DCR3_9GAMM (4HBT domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DCR3_9GAMM)

HSP 1 Score: 77.4 bits (189), Expect = 1.300e-16
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 LAIDVAILRYGGTSFEIGFNGRVGERAVFKARSTCVSVKAGTTEKFATPDHIKALLGAAQEWDVPA 198
            L ID  I+RYG +SF++G+ G V ER VF AR+ CVSV+  T EKF TP  IKA+LG    W++P+
Sbjct:   72 LTIDTGIVRYGSSSFDVGYIGNVEERPVFTARAVCVSVRPDTYEKFPTPASIKAILGDVVTWEIPS 137
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53492.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3D5DCR3_9GAMM1.300e-1653.034HBT domain-containing protein n=1 Tax=Gammaproteo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53492contigP-wetherbeei_contig53492:336..536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size201
Hectar predicted targeting categoryother localisation
Exons1
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186800.0473564-CDS-P-wetherbeei_contig53492:335..5361683186800.0473564-CDS-P-wetherbeei_contig53492:335..536Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53492 336..536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53492.1.1prot_P-wetherbeei_contig53492.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53492 336..536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53492.1.1

>prot_P-wetherbeei_contig53492.1.1 ID=prot_P-wetherbeei_contig53492.1.1|Name=mRNA_P-wetherbeei_contig53492.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
LAIDVAILRYGGTSFEIGFNGRVGERAVFKARSTCVSVKAGTTEKFATPD
HIKALLGAAQEWDVPA*
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mRNA from alignment at P-wetherbeei_contig53492:336..536-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53492.1.1 ID=mRNA_P-wetherbeei_contig53492.1.1|Name=mRNA_P-wetherbeei_contig53492.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig53492:336..536- (Phaeothamnion wetherbeei SAG_119_79)
TTGGCGATAGATGTTGCCATCCTGCGTTACGGCGGCACGTCCTTCGAGAT
TGGTTTCAACGGCAGGGTCGGCGAGCGCGCGGTGTTCAAGGCGCGCAGCA
CATGTGTGAGCGTGAAGGCCGGCACGACCGAGAAATTCGCCACGCCGGAT
CACATCAAGGCGCTATTGGGCGCGGCTCAAGAATGGGATGTGCCGGCCTG
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53492:336..536-

>mRNA_P-wetherbeei_contig53492.1.1 ID=mRNA_P-wetherbeei_contig53492.1.1|Name=mRNA_P-wetherbeei_contig53492.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig53492:336..536- (Phaeothamnion wetherbeei SAG_119_79)
TTGGCGATAGATGTTGCCATCCTGCGTTACGGCGGCACGTCCTTCGAGAT
TGGTTTCAACGGCAGGGTCGGCGAGCGCGCGGTGTTCAAGGCGCGCAGCA
CATGTGTGAGCGTGAAGGCCGGCACGACCGAGAAATTCGCCACGCCGGAT
CACATCAAGGCGCTATTGGGCGCGGCTCAAGAATGGGATGTGCCGGCCTG
A
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