mRNA_P-wetherbeei_contig53489.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53489.1.1
Unique NamemRNA_P-wetherbeei_contig53489.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53489.1.1 vs. uniprot
Match: A0A6J6QSQ8_9ZZZZ (Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A6J6QSQ8_9ZZZZ)

HSP 1 Score: 293 bits (749), Expect = 3.030e-98
Identity = 134/168 (79.76%), Postives = 149/168 (88.69%), Query Frame = 1
Query:    1 GYLVHCVTASGAVCGMLGIIAVSGGRPREAVLWLAVAMVLDGIDGPVARHWCVRENVPRIDGYTLDLIVDFVTCIVIPVIFLHKFEMLPHGWSLFIGAFVLFMSALWMSRTDQMTEDHWFNGFPCEWNMIVPTLYLLDSPKWFTAGACVALALTQLTNWKFVHPMQVR 504
            GYLVHC TA GAVCGM G+IAV+ G  ++A++WLAVAMVLDGIDGP AR W V +NVPRIDGYTLDLI+DFVTCIVIPV+F+H+F MLP GWSL IGAFVLFMSALWMSRTDQMT+DH+FNGFPCEWNMIVPTLYLLDS  W T   CVALALTQLTNWKF+HPMQV+
Sbjct:   23 GYLVHCFTALGAVCGMFGLIAVADGEAKQAIIWLAVAMVLDGIDGPAARAWAVAKNVPRIDGYTLDLIIDFVTCIVIPVLFMHRFGMLPRGWSLVIGAFVLFMSALWMSRTDQMTDDHFFNGFPCEWNMIVPTLYLLDSKPWVTGIICVALALTQLTNWKFLHPMQVK 190          
BLAST of mRNA_P-wetherbeei_contig53489.1.1 vs. uniprot
Match: A0A3C1L6Y3_9ACTN (Phosphatidylcholine synthase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A3C1L6Y3_9ACTN)

HSP 1 Score: 242 bits (617), Expect = 5.490e-78
Identity = 114/169 (67.46%), Postives = 137/169 (81.07%), Query Frame = 1
Query:    1 GYLVHCVTASGAVCGMLGIIAVSGGRPREAVLWLAVAMVLDGIDGPVARHWCVRENVPRIDGYTLDLIVDFVTCIVIPVIFLHKFEMLPHG-WSLFIGAFVLFMSALWMSRTDQMTEDHWFNGFPCEWNMIVPTLYLLDSPKWFTAGACVALALTQLTNWKFVHPMQVR 504
            G+ VH  TA GA+CGM G++AV     + A+LWLA+AMV+DG+DG  AR + V+ +VPRIDGYTLDLI+DFVTCIVIPV+F+ +F MLPH  W   I +FV+ MSALWMSRTDQMT DH+FNGFPCEWNMIVPTL+LL+   W TA AC+ LALTQLTNWKF+HPMQVR
Sbjct:   37 GWFVHSFTALGALCGMFGLMAVGDRNYKIAILWLAIAMVVDGLDGLAARKYEVKTHVPRIDGYTLDLIIDFVTCIVIPVMFMLRFFMLPHNPWGAIIASFVMLMSALWMSRTDQMTSDHFFNGFPCEWNMIVPTLFLLNMKPWPTAIACILLALTQLTNWKFLHPMQVR 205          
BLAST of mRNA_P-wetherbeei_contig53489.1.1 vs. uniprot
Match: A0A3C2B1Q9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B1Q9_9ACTN)

HSP 1 Score: 239 bits (609), Expect = 1.570e-77
Identity = 109/153 (71.24%), Postives = 132/153 (86.27%), Query Frame = 1
Query:   46 MLGIIAVSGGRPREAVLWLAVAMVLDGIDGPVARHWCVRENVPRIDGYTLDLIVDFVTCIVIPVIFLHKFEMLPHGWSLFIGAFVLFMSALWMSRTDQMTEDHWFNGFPCEWNMIVPTLYLLDSPKWFTAGACVALALTQLTNWKFVHPMQVR 504
            M G++AV  G  + A++WLAVAM++DGIDGPVAR W VR +VPRIDGYTLDLI+D+VTCIVIPV+F+ +F+MLP+   L I +FVLF+SALWMSRTDQMT+D +FNGFPCEWNMIVPTLYLL++  W TA  C+ALALTQLTNWKF+HPMQVR
Sbjct:    1 MFGLMAVVDGDFKVAIVWLAVAMIVDGIDGPVARAWDVRTHVPRIDGYTLDLIIDYVTCIVIPVLFMIRFDMLPNRGGLLIASFVLFLSALWMSRTDQMTDDLYFNGFPCEWNMIVPTLYLLEASPWVTATVCIALALTQLTNWKFIHPMQVR 153          
BLAST of mRNA_P-wetherbeei_contig53489.1.1 vs. uniprot
Match: A0A6I3C422_9ACTN (Phosphatidylcholine synthase n=2 Tax=root TaxID=1 RepID=A0A6I3C422_9ACTN)

HSP 1 Score: 227 bits (578), Expect = 4.240e-72
Identity = 104/174 (59.77%), Postives = 131/174 (75.29%), Query Frame = 1
Query:    1 GYLVHCVTASGAVCGMLGIIAVSGGRPREAVLWLAVAMVLDGIDGPVARHWCVRENVPRIDGYTLDLIVDFVTCIVIPVIFLHKFEMLPHGWSLFIGAFVLFMSALWMSRTDQMTEDHWFNGFPCEWNMIVPTLYLLDSP------KWFTAGACVALALTQLTNWKFVHPMQVR 504
            G++VHC TA GAVCGMLGII+V    P+ A+LWL  A VLDG+DGPVAR W V+ +VPRIDGY LDL++D+VTC V+PV+F++KF M+P   SL +GAF+LF SALW SRTD MT+DHWFNGFP  WN+ +PT+YL+         +W      + LAL+QLTN KFVHP+QVR
Sbjct:   30 GWIVHCATALGAVCGMLGIISVLDNAPKAALLWLIAAQVLDGLDGPVARAWNVQTSVPRIDGYILDLVIDYVTCAVVPVLFMYKFHMVPSHSSLAVGAFLLFSSALWFSRTDMMTDDHWFNGFPSVWNLAIPTMYLVQGSNATSLNRWINFAVLLILALSQLTNLKFVHPVQVR 203          
BLAST of mRNA_P-wetherbeei_contig53489.1.1 vs. uniprot
Match: A0A6I3WRK3_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3WRK3_9ACTN)

HSP 1 Score: 227 bits (578), Expect = 8.120e-72
Identity = 107/174 (61.49%), Postives = 129/174 (74.14%), Query Frame = 1
Query:    1 GYLVHCVTASGAVCGMLGIIAVSGGRPREAVLWLAVAMVLDGIDGPVARHWCVRENVPRIDGYTLDLIVDFVTCIVIPVIFLHKFEMLPHGWSLFIGAFVLFMSALWMSRTDQMTEDHWFNGFPCEWNMIVPTLYLLDSPK------WFTAGACVALALTQLTNWKFVHPMQVR 504
            G+LVHC TA GAVCGMLGII+V    P+ A+LWL  A VLDG+DGPVAR W V+ +VPRIDGY LDLI+DFVTC V+P++F++KF MLP   SL +GAF+LF SALW SRTD MT DHWFNGFP  WN+ VPT++L+          W      + LAL+QLTN KFVHP+QVR
Sbjct:   51 GWLVHCATALGAVCGMLGIISVIDDAPKAALLWLIAAQVLDGLDGPVARAWNVQTSVPRIDGYILDLIIDFVTCAVVPILFMYKFHMLPAHTSLIMGAFLLFSSALWFSRTDMMTADHWFNGFPSVWNLAVPTMFLVQGANPTSLNHWINLAVLLILALSQLTNLKFVHPVQVR 224          
BLAST of mRNA_P-wetherbeei_contig53489.1.1 vs. uniprot
Match: A0A7K0S651_9ACTN (Phosphatidylcholine synthase n=2 Tax=root TaxID=1 RepID=A0A7K0S651_9ACTN)

HSP 1 Score: 183 bits (465), Expect = 2.150e-55
Identity = 89/168 (52.98%), Postives = 115/168 (68.45%), Query Frame = 1
Query:    1 GYLVHCVTASGAVCGMLGIIAVSGGRPREAVLWLAVAMVLDGIDGPVARHWCVRENVPRIDGYTLDLIVDFVTCIVIPVIFLHKFEMLPHGWSLFIGAFVLFMSALWMSRTDQMTEDHWFNGFPCEWNMIVPTLYLLDSPKWFTAGACVALALTQLTNWKFVHPMQVR 504
            GY +H +TASGA  G+L + AV  G  R A+LWL V  +LDG+DGP+AR   V  N PR+DGY LDLIVD+VTC+V+PV  + +  MLP  +   I A V+ +SALW +RTD  TEDHWFNGFP  WN+ VP+  +LD  +  TA   V LA++QLTN KF H ++VR
Sbjct:   12 GYALHVMTASGAAAGLLALQAVIDGNVRGALLWLLVCQILDGLDGPIARKIDVVFNAPRVDGYVLDLIVDYVTCVVVPVALMIRLNMLPSEFQTLIAAIVILLSALWFARTDIETEDHWFNGFPAVWNLAVPSFLILDLSQRTTAIVTVLLAVSQLTNIKFPHLVRVR 179          
BLAST of mRNA_P-wetherbeei_contig53489.1.1 vs. uniprot
Match: A0A2G4GMV2_9ACTN (Phosphatidylcholine synthase n=5 Tax=root TaxID=1 RepID=A0A2G4GMV2_9ACTN)

HSP 1 Score: 182 bits (461), Expect = 1.100e-54
Identity = 85/169 (50.30%), Postives = 116/169 (68.64%), Query Frame = 1
Query:    1 GYLVHCVTASGAVCGMLGIIAVSGGRPREAVLWLAVAMVLDGIDGPVARHWCVRENVPRIDGYTLDLIVDFVTCIVIPVIFLHKFEMLPHGWSLFIGAFVLFMSALWMSRTDQMTEDHWFNGFPCEWNMIVPTLYLLD-SPKWFTAGACVALALTQLTNWKFVHPMQVR 504
            G  +H +TASGA  G+L + A   G  R A+LWL V  VLDGIDGP+AR   V ++ P++DG+ LDL+VD+VTC+V+PV F+ + ++LP GW + + A ++F SALW +RTD  TED WFNGFP  WN++VPT  +L   P W T  + +AL L QLT  KF H M+V+
Sbjct:   13 GLAIHALTASGAAAGLLALQATIDGHIRAALLWLIVCQVLDGIDGPIARKLAVTDHAPQVDGHILDLVVDYVTCVVVPVAFMVRMDLLPSGWQMAVAALIVFTSALWFARTDLETEDAWFNGFPAAWNVVVPTFLILHIGPTWATIIS-IALCLLQLTRVKFPHLMRVK 180          
BLAST of mRNA_P-wetherbeei_contig53489.1.1 vs. uniprot
Match: A0A6I3H8Z9_9ACTN (Phosphatidylcholine synthase n=4 Tax=root TaxID=1 RepID=A0A6I3H8Z9_9ACTN)

HSP 1 Score: 179 bits (455), Expect = 7.880e-54
Identity = 88/167 (52.69%), Postives = 113/167 (67.66%), Query Frame = 1
Query:    1 GYLVHCVTASGAVCGMLGIIAVSGGRPREAVLWLAVAMVLDGIDGPVARHWCVRENVPRIDGYTLDLIVDFVTCIVIPVIFLHKFEMLPHGWSLFIGAFVLFMSALWMSRTDQMTEDHWFNGFPCEWNMIVPTLYLLDSPKWFTAGACVALALTQLTNWKFVHPMQV 501
            GY +H +TASGA  G+L + AV  G  R A+LWL +  VLDG+DGP+AR   V  + PR+DGY LDLIVD++TC+V+PV  +    MLP  +   I A VL +SALW +RTD  TEDHWFNGFP  WN+ VPT  +LD  +  TA   V LA++QLTN KF H ++V
Sbjct:   15 GYALHVMTASGAAAGLLALQAVIDGNVRGALLWLLLCQVLDGLDGPIARRIDVVFHAPRVDGYVLDLIVDYLTCVVVPVALMVSLNMLPSEFQTLIAAMVLLLSALWFARTDIETEDHWFNGFPAIWNLAVPTFLILDLSQRTTAIVTVILAISQLTNIKFPHLVRV 181          
BLAST of mRNA_P-wetherbeei_contig53489.1.1 vs. uniprot
Match: A0A1J5QBH4_9ZZZZ (Phosphatidylcholine synthase n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5QBH4_9ZZZZ)

HSP 1 Score: 177 bits (450), Expect = 7.170e-53
Identity = 81/168 (48.21%), Postives = 113/168 (67.26%), Query Frame = 1
Query:    1 GYLVHCVTASGAVCGMLGIIAVSGGRPREAVLWLAVAMVLDGIDGPVARHWCVRENVPRIDGYTLDLIVDFVTCIVIPVIFLHKFEMLPHGWSLFIGAFVLFMSALWMSRTDQMTEDHWFNGFPCEWNMIVPTLYLLDSPKWFTAGACVALALTQLTNWKFVHPMQVR 504
            G  +H +TASGA+ G+LG+ AV  G  R A++WL V  VLDGIDGP+AR   V  + PRIDG+ LDL+VDFV+C+V+PV  +H+  ++PH   ++I A ++F SALW +R DQ T D WFNGFP  WN+++PT  +L + +       + L   QLT+ KF H M+VR
Sbjct:   26 GLAIHAITASGAIAGLLGLQAVIDGHVRSALIWLIVCQVLDGIDGPIARRIDVVTHAPRIDGHILDLVVDFVSCVVVPVAVMHRMNLVPHRAEIWITALIIFTSALWFARRDQETSDAWFNGFPAAWNIVIPTFLILGTSRSAALVISIVLCALQLTSVKFPHLMRVR 193          
BLAST of mRNA_P-wetherbeei_contig53489.1.1 vs. uniprot
Match: A0A7K1B850_9ACTN (Phosphatidylcholine synthase n=2 Tax=root TaxID=1 RepID=A0A7K1B850_9ACTN)

HSP 1 Score: 175 bits (444), Expect = 3.420e-52
Identity = 82/164 (50.00%), Postives = 115/164 (70.12%), Query Frame = 1
Query:   10 VHCVTASGAVCGMLGIIAVSGGRPREAVLWLAVAMVLDGIDGPVARHWCVRENVPRIDGYTLDLIVDFVTCIVIPVIFLHKFEMLPHG-WSLFIGAFVLFMSALWMSRTDQMTEDHWFNGFPCEWNMIVPTLYLLDSPKWFTAGACVALALTQLTNWKFVHPMQ 498
            +H +TASG + GML IIAV  G PR AVL L +A V+DGIDGP+AR + V+  +P+ DGY LDL++D+VTC+++P +F  +F +LP G +     A +L  SA+W SRTD MT DHWF GFP  WNM++PTL+LL++P   TA   + L+   +T+ +F HP+Q
Sbjct:   21 IHLLTASGILVGMLAIIAVLDGSPRAAVLLLVLAQVIDGIDGPLARRYDVKNVIPKYDGYILDLVIDYVTCVLVPAVFAWQFGLLPDGPFGEVTIAVMLVTSAMWFSRTDMMTTDHWFRGFPAVWNMVIPTLWLLETPAPLTAIIVLVLSALSMTDVEFAHPVQ 184          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53489.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J6QSQ8_9ZZZZ3.030e-9879.76Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A... [more]
A0A3C1L6Y3_9ACTN5.490e-7867.46Phosphatidylcholine synthase n=2 Tax=Actinobacteri... [more]
A0A3C2B1Q9_9ACTN1.570e-7771.24Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6I3C422_9ACTN4.240e-7259.77Phosphatidylcholine synthase n=2 Tax=root TaxID=1 ... [more]
A0A6I3WRK3_9ACTN8.120e-7261.49Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A7K0S651_9ACTN2.150e-5552.98Phosphatidylcholine synthase n=2 Tax=root TaxID=1 ... [more]
A0A2G4GMV2_9ACTN1.100e-5450.30Phosphatidylcholine synthase n=5 Tax=root TaxID=1 ... [more]
A0A6I3H8Z9_9ACTN7.880e-5452.69Phosphatidylcholine synthase n=4 Tax=root TaxID=1 ... [more]
A0A1J5QBH4_9ZZZZ7.170e-5348.21Phosphatidylcholine synthase n=1 Tax=mine drainage... [more]
A0A7K1B850_9ACTN3.420e-5250.00Phosphatidylcholine synthase n=2 Tax=root TaxID=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53489contigP-wetherbeei_contig53489:7..510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1089552.KI911559_gene1783
Model size504
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00002,RC00017,RC02795
KEGG koko:K01004
KEGG ReactionR05794
KEGG Pathwayko00564,ko01110,map00564,map01110
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.24e-44
EggNOG OGsCOG1183@1|root,COG1183@2|Bacteria,1NGCJ@1224|Proteobacteria,2TS1K@28211|Alphaproteobacteria,2JSRI@204441|Rhodospirillales
EC2.7.8.24
DescriptionCondenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP
Cds size504
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186799.9776742-CDS-P-wetherbeei_contig53489:6..5101683186799.9776742-CDS-P-wetherbeei_contig53489:6..510Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53489 7..510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53489.1.1prot_P-wetherbeei_contig53489.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53489 7..510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53489.1.1

>prot_P-wetherbeei_contig53489.1.1 ID=prot_P-wetherbeei_contig53489.1.1|Name=mRNA_P-wetherbeei_contig53489.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
GYLVHCVTASGAVCGMLGIIAVSGGRPREAVLWLAVAMVLDGIDGPVARH
WCVRENVPRIDGYTLDLIVDFVTCIVIPVIFLHKFEMLPHGWSLFIGAFV
LFMSALWMSRTDQMTEDHWFNGFPCEWNMIVPTLYLLDSPKWFTAGACVA
LALTQLTNWKFVHPMQVR
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mRNA from alignment at P-wetherbeei_contig53489:7..510-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53489.1.1 ID=mRNA_P-wetherbeei_contig53489.1.1|Name=mRNA_P-wetherbeei_contig53489.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig53489:7..510- (Phaeothamnion wetherbeei SAG_119_79)
GGGTACCTGGTGCACTGCGTCACCGCCAGCGGAGCGGTGTGCGGCATGCT CGGCATCATCGCCGTGTCTGGCGGGCGACCGCGCGAAGCGGTGCTGTGGC TCGCCGTGGCGATGGTCCTCGACGGCATCGACGGCCCCGTGGCCCGCCAC TGGTGCGTGCGCGAGAACGTGCCGCGCATCGACGGCTACACGCTCGACCT GATCGTCGACTTCGTCACGTGCATCGTCATCCCGGTGATCTTCCTGCACA AGTTCGAGATGCTCCCCCACGGCTGGTCGCTGTTCATCGGCGCCTTCGTG CTGTTCATGTCCGCGTTGTGGATGTCGCGCACCGATCAGATGACCGAGGA CCACTGGTTCAACGGCTTCCCGTGCGAGTGGAACATGATCGTGCCGACGC TGTACCTCCTCGATTCGCCGAAGTGGTTCACCGCCGGGGCCTGCGTGGCG CTGGCGCTGACGCAGCTGACCAACTGGAAGTTCGTGCACCCGATGCAGGT GCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53489:7..510-

>mRNA_P-wetherbeei_contig53489.1.1 ID=mRNA_P-wetherbeei_contig53489.1.1|Name=mRNA_P-wetherbeei_contig53489.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig53489:7..510- (Phaeothamnion wetherbeei SAG_119_79)
GGGTACCTGGTGCACTGCGTCACCGCCAGCGGAGCGGTGTGCGGCATGCT
CGGCATCATCGCCGTGTCTGGCGGGCGACCGCGCGAAGCGGTGCTGTGGC
TCGCCGTGGCGATGGTCCTCGACGGCATCGACGGCCCCGTGGCCCGCCAC
TGGTGCGTGCGCGAGAACGTGCCGCGCATCGACGGCTACACGCTCGACCT
GATCGTCGACTTCGTCACGTGCATCGTCATCCCGGTGATCTTCCTGCACA
AGTTCGAGATGCTCCCCCACGGCTGGTCGCTGTTCATCGGCGCCTTCGTG
CTGTTCATGTCCGCGTTGTGGATGTCGCGCACCGATCAGATGACCGAGGA
CCACTGGTTCAACGGCTTCCCGTGCGAGTGGAACATGATCGTGCCGACGC
TGTACCTCCTCGATTCGCCGAAGTGGTTCACCGCCGGGGCCTGCGTGGCG
CTGGCGCTGACGCAGCTGACCAACTGGAAGTTCGTGCACCCGATGCAGGT
GCGT
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