mRNA_P-wetherbeei_contig53483.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53483.1.1
Unique NamemRNA_P-wetherbeei_contig53483.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53483.1.1 vs. uniprot
Match: A0A7X9Q3L4_9ACTN (2,4-dienoyl-CoA reductase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9Q3L4_9ACTN)

HSP 1 Score: 168 bits (426), Expect = 2.710e-51
Identity = 92/115 (80.00%), Postives = 100/115 (86.96%), Query Frame = 1 
Query:    1 AEERAARAVLITQDHIAGNELSRTGDLAPANVRLAQRGVRIERRSLLRTVRSGEIELEDRFSGERRTIAVAALVDCGFRLPTDPIPGAV-QAGDAVAPRTILEAVLEARRAARSI 342
            AE   +RA+LITQD IAGNELSRTGDLAPANVRL Q+G +IERRSLLR VR+GE+ELEDRFSGERRT+  AALVDCGFRLPTDPIP A  QAGD VAPRTI EAVLEARRAA S+
Sbjct:   58 AETLGSRAILITQDQIAGNELSRTGDLAPANVRLQQQGAQIERRSLLRAVRAGEVELEDRFSGERRTVHCAALVDCGFRLPTDPIPAATAQAGDCVAPRTIHEAVLEARRAALSV 172
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BLAST of mRNA_P-wetherbeei_contig53483.1.1 vs. uniprot
Match: A0A6J7CBD9_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7CBD9_9ZZZZ)

HSP 1 Score: 165 bits (417), Expect = 1.450e-48
Identity = 90/115 (78.26%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 AEERAARAVLITQDHIAGNELSRTGDLAPANVRLAQRGVRIERRSLLRTVRSGEIELEDRFSGERRTIAVAALVDCGFRLPTDPIPGA-VQAGDAVAPRTILEAVLEARRAARSI 342
            AE+   RA+LITQD IAGNELSRTGDLAPANVRL QR V IERRS+LR VR GEIE+EDRFSGERRT+A AAL+DCGFRLPTDPI GA  Q GD VAPRT+ EAVLE RRAA SI
Sbjct:  165 AEQLGDRAILITQDQIAGNELSRTGDLAPANVRLQQRNVHIERRSILRAVRPGEIEMEDRFSGERRTVAAAALIDCGFRLPTDPITGAHAQVGDCVAPRTLHEAVLEGRRAALSI 279
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BLAST of mRNA_P-wetherbeei_contig53483.1.1 vs. uniprot
Match: A0A7K1B1B8_9ACTN (Mycofactocin system FadH/OYE family oxidoreductase 1 n=2 Tax=root TaxID=1 RepID=A0A7K1B1B8_9ACTN)

HSP 1 Score: 167 bits (423), Expect = 1.470e-46
Identity = 89/115 (77.39%), Postives = 102/115 (88.70%), Query Frame = 1 
Query:    1 AEERAARAVLITQDHIAGNELSRTGDLAPANVRLAQRGVRIERRSLLRTVRSGEIELEDRFSGERRTIAVAALVDCGFRLPTDPIPGA-VQAGDAVAPRTILEAVLEARRAARSI 342
            AEE   RAVL+TQD+IAGNELSR+GDLAPANVRLAQRGVRIE+R+LLR VR G +E++DRF+GERRTI  AA+VDCGFRLPTDP+ G  VQ GD VAPRT+LEAVLEARRAAR+I
Sbjct:  511 AEELGERAVLVTQDNIAGNELSRSGDLAPANVRLAQRGVRIEKRTLLRAVRPGAVEVQDRFNGERRTIDAAAVVDCGFRLPTDPLDGVTVQVGDCVAPRTVLEAVLEARRAARTI 625
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BLAST of mRNA_P-wetherbeei_contig53483.1.1 vs. uniprot
Match: A0A6I3EZ41_9ACTN (Mycofactocin system FadH/OYE family oxidoreductase 1 n=2 Tax=root TaxID=1 RepID=A0A6I3EZ41_9ACTN)

HSP 1 Score: 165 bits (417), Expect = 1.010e-45
Identity = 90/115 (78.26%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 AEERAARAVLITQDHIAGNELSRTGDLAPANVRLAQRGVRIERRSLLRTVRSGEIELEDRFSGERRTIAVAALVDCGFRLPTDPIPGA-VQAGDAVAPRTILEAVLEARRAARSI 342
            AE+   RA+LITQD IAGNELSRTGDLAPANVRL QR V IERRS+LR VR GEIE+EDRFSGERRT+A AAL+DCGFRLPTDPI GA  Q GD VAPRT+ EAVLE RRAA SI
Sbjct:  507 AEQLGDRAILITQDQIAGNELSRTGDLAPANVRLQQRNVHIERRSILRAVRPGEIEMEDRFSGERRTVAAAALIDCGFRLPTDPITGAHAQVGDCVAPRTLHEAVLEGRRAALSI 621
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BLAST of mRNA_P-wetherbeei_contig53483.1.1 vs. uniprot
Match: A0A524N8U5_9ACTN (Mycofactocin system FadH/OYE family oxidoreductase 1 n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A524N8U5_9ACTN)

HSP 1 Score: 164 bits (416), Expect = 1.540e-45
Identity = 87/114 (76.32%), Postives = 99/114 (86.84%), Query Frame = 1 
Query:    1 AEERAARAVLITQDHIAGNELSRTGDLAPANVRLAQRGVRIERRSLLRTVRSGEIELEDRFSGERRTIAVAALVDCGFRLPTDPIPGAVQAGDAVAPRTILEAVLEARRAARSI 342
            AEE  ARAVLITQD+IAGNEL+RTGDLAPAN RLAQ+G  IERR+LLRTVR  E+E+EDR+SGERRTI   A+VDCGFR+PT+PI GA+Q GD VAPRT+ EAVLEARRAA SI
Sbjct:  516 AEELGARAVLITQDNIAGNELARTGDLAPANTRLAQQGATIERRTLLRTVRRDEVEVEDRYSGERRTIPCVAVVDCGFRIPTEPIGGAIQIGDGVAPRTVHEAVLEARRAALSI 629
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BLAST of mRNA_P-wetherbeei_contig53483.1.1 vs. uniprot
Match: A0A6I3WU02_9ACTN (Mycofactocin system FadH/OYE family oxidoreductase 1 n=2 Tax=root TaxID=1 RepID=A0A6I3WU02_9ACTN)

HSP 1 Score: 154 bits (390), Expect = 7.920e-42
Identity = 84/115 (73.04%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 AEERAARAVLITQDHIAGNELSRTGDLAPANVRLAQRGVRIERRSLLRTVRSGEIELEDRFSGERRTIAVAALVDCGFRLPTDPIPGA-VQAGDAVAPRTILEAVLEARRAARSI 342
            AEE  ARAVL+TQD+IAGNELSRTGDLAPANVRLAQ+GVRIERRSLLR+V    + LEDRF+GERR ++  ALVDCGFRLPT  + GA VQAGD VAPRT+ EA+LE RRAA ++
Sbjct:  515 AEELGARAVLVTQDNIAGNELSRTGDLAPANVRLAQQGVRIERRSLLRSVHPDHVVLEDRFTGERRDVSCVALVDCGFRLPTPALAGAAVQAGDCVAPRTLHEAILEGRRAAMAV 629
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BLAST of mRNA_P-wetherbeei_contig53483.1.1 vs. uniprot
Match: A0A7Y1ZVF5_9ACTN (Mycofactocin system FadH/OYE family oxidoreductase 1 n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZVF5_9ACTN)

HSP 1 Score: 151 bits (381), Expect = 1.520e-40
Identity = 83/115 (72.17%), Postives = 95/115 (82.61%), Query Frame = 1 
Query:    1 AEERAARAVLITQDHIAGNELSRTGDLAPANVRLAQRGVRIERRSLLRTVRSGEIELEDRFSGERRTIAVAALVDCGFRLPTDPIPGAV-QAGDAVAPRTILEAVLEARRAARSI 342
            AEE   RAVLITQD+IAGNELSRTGDLAPAN RLA+  VR+ERRSLLR V +  +ELEDRFSG+RR +A +ALVDCGFRLPTD +P A  +AGDAVAPR++ EAVLE RR A SI
Sbjct:  521 AEELGDRAVLITQDNIAGNELSRTGDLAPANTRLARGNVRVERRSLLRRVTAAGVELEDRFSGDRRIVACSALVDCGFRLPTDQLPAAAHRAGDAVAPRSVYEAVLEGRRIAHSI 635
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BLAST of mRNA_P-wetherbeei_contig53483.1.1 vs. uniprot
Match: A0A2E3TTX8_9ACTN (Mycofactocin system FadH/OYE family oxidoreductase 1 n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A2E3TTX8_9ACTN)

HSP 1 Score: 150 bits (379), Expect = 2.820e-40
Identity = 83/115 (72.17%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 AEERAARAVLITQDHIAGNELSRTGDLAPANVRLAQRGVRIERRSLLRTVRSGEIELEDRFSGERRTIAVAALVDCGFRLPTDPIPG-AVQAGDAVAPRTILEAVLEARRAARSI 342
            AE+   RAVL+TQD+IAGNELSRTGDLAPAN RLAQ+ V +ERRS++R + +    LEDRF+GERRTIA AA+VDCGFRLPTDPI G A++AGDAVAPRT+ EAVLEARR A SI
Sbjct:  517 AEQLGDRAVLVTQDNIAGNELSRTGDLAPANSRLAQQAVTVERRSIVRGITARGAVLEDRFNGERRTIACAAVVDCGFRLPTDPIDGVALRAGDAVAPRTVHEAVLEARRVAHSI 631
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BLAST of mRNA_P-wetherbeei_contig53483.1.1 vs. uniprot
Match: A0A539DYZ8_9ACTN (NADH:flavin oxidoreductase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DYZ8_9ACTN)

HSP 1 Score: 141 bits (356), Expect = 6.980e-40
Identity = 80/115 (69.57%), Postives = 91/115 (79.13%), Query Frame = 1 
Query:    1 AEERAARAVLITQDHIAGNELSRTGDLAPANVRLAQRGVRIERRSLLRTVRSGEIELEDRFSGERRTIAVAALVDCGFRLPTDPIPGAV-QAGDAVAPRTILEAVLEARRAARSI 342
            A E   RAVLITQD IAGNELSR+GDLAPANVRLAQRG RIERR+LLR+V +  + ++DRFS ERR I   ALVDCGFRLP   I GA  + GD VAPRT+ EAVLEARRAAR++
Sbjct:  121 AAELGDRAVLITQDQIAGNELSRSGDLAPANVRLAQRGARIERRALLRSVAADHVVVQDRFSDERRKIECVALVDCGFRLPDHAIAGATARVGDCVAPRTVHEAVLEARRAARTL 235
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BLAST of mRNA_P-wetherbeei_contig53483.1.1 vs. uniprot
Match: A0A6J6WX62_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6WX62_9ZZZZ)

HSP 1 Score: 137 bits (345), Expect = 2.570e-38
Identity = 79/118 (66.95%), Postives = 92/118 (77.97%), Query Frame = 1 
Query:    1 AEERAARAVLITQDHIAGNELSRTGDLAPANVRLAQRGVRIERRSLLRTV-RSGE---IELEDRFSGERRTIAVAALVDCGFRLPTDPIPGAVQAGDAVAPRTILEAVLEARRAARSI 342
            AEE  ARA+L T D+IAGNEL+RTGDLAPANVRLAQ GV I+RR ++R V R GE   + ++DRFSG    I  AA+VD GFRLPTDPI GA+QAGD VAPRTILEA+LE RR A+ I
Sbjct:  110 AEELGARAILFTPDNIAGNELARTGDLAPANVRLAQNGVTIQRRCVVRGVERRGEEFVVRVQDRFSGVVDEILCAAVVDAGFRLPTDPIDGALQAGDCVAPRTILEAILEGRRVAQQI 227
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53483.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9Q3L4_9ACTN2.710e-5180.002,4-dienoyl-CoA reductase n=2 Tax=Actinobacteria T... [more]
A0A6J7CBD9_9ZZZZ1.450e-4878.26Unannotated protein n=1 Tax=freshwater metagenome ... [more]
A0A7K1B1B8_9ACTN1.470e-4677.39Mycofactocin system FadH/OYE family oxidoreductase... [more]
A0A6I3EZ41_9ACTN1.010e-4578.26Mycofactocin system FadH/OYE family oxidoreductase... [more]
A0A524N8U5_9ACTN1.540e-4576.32Mycofactocin system FadH/OYE family oxidoreductase... [more]
A0A6I3WU02_9ACTN7.920e-4273.04Mycofactocin system FadH/OYE family oxidoreductase... [more]
A0A7Y1ZVF5_9ACTN1.520e-4072.17Mycofactocin system FadH/OYE family oxidoreductase... [more]
A0A2E3TTX8_9ACTN2.820e-4072.17Mycofactocin system FadH/OYE family oxidoreductase... [more]
A0A539DYZ8_9ACTN6.980e-4069.57NADH:flavin oxidoreductase (Fragment) n=1 Tax=Acid... [more]
A0A6J6WX62_9ZZZZ2.570e-3866.95Unannotated protein n=1 Tax=freshwater metagenome ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53483contigP-wetherbeei_contig53483:3..347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1229780.BN381_250080
PFAMsOxidored_FMN,Pyr_redox_2
Model size345
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.01e-27
EggNOG OGsCOG0446@1|root,COG1902@1|root,COG0446@2|Bacteria,COG1902@2|Bacteria,2GK8E@201174|Actinobacteria,3UWJK@52018|unclassified Actinobacteria (class)
DescriptionNADH:flavin oxidoreductase / NADH oxidase family
Cds size345
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186799.8956048-CDS-P-wetherbeei_contig53483:2..3471683186799.8956048-CDS-P-wetherbeei_contig53483:2..347Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53483 3..347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53483.1.1prot_P-wetherbeei_contig53483.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53483 3..347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53483.1.1

>prot_P-wetherbeei_contig53483.1.1 ID=prot_P-wetherbeei_contig53483.1.1|Name=mRNA_P-wetherbeei_contig53483.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
AEERAARAVLITQDHIAGNELSRTGDLAPANVRLAQRGVRIERRSLLRTV
RSGEIELEDRFSGERRTIAVAALVDCGFRLPTDPIPGAVQAGDAVAPRTI
LEAVLEARRAARSI*
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mRNA from alignment at P-wetherbeei_contig53483:3..347+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53483.1.1 ID=mRNA_P-wetherbeei_contig53483.1.1|Name=mRNA_P-wetherbeei_contig53483.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig53483:3..347+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGAGGAGCGCGCCGCACGCGCCGTGCTGATCACCCAGGACCACATCGC
CGGCAACGAGCTCTCGCGCACCGGGGACCTCGCACCGGCCAACGTCCGCC
TGGCGCAACGCGGCGTGCGCATCGAGCGACGGTCGTTGCTGCGCACGGTT
CGCTCGGGTGAGATCGAGCTGGAGGATCGCTTCAGCGGAGAGCGGCGCAC
CATCGCCGTCGCCGCGTTGGTCGACTGCGGCTTCCGCCTGCCGACCGACC
CCATCCCCGGTGCCGTGCAAGCCGGCGACGCGGTTGCCCCGCGCACGATT
CTCGAAGCCGTGCTCGAAGCACGACGAGCAGCACGTTCCATCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53483:3..347+

>mRNA_P-wetherbeei_contig53483.1.1 ID=mRNA_P-wetherbeei_contig53483.1.1|Name=mRNA_P-wetherbeei_contig53483.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig53483:3..347+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGAGGAGCGCGCCGCACGCGCCGTGCTGATCACCCAGGACCACATCGC
CGGCAACGAGCTCTCGCGCACCGGGGACCTCGCACCGGCCAACGTCCGCC
TGGCGCAACGCGGCGTGCGCATCGAGCGACGGTCGTTGCTGCGCACGGTT
CGCTCGGGTGAGATCGAGCTGGAGGATCGCTTCAGCGGAGAGCGGCGCAC
CATCGCCGTCGCCGCGTTGGTCGACTGCGGCTTCCGCCTGCCGACCGACC
CCATCCCCGGTGCCGTGCAAGCCGGCGACGCGGTTGCCCCGCGCACGATT
CTCGAAGCCGTGCTCGAAGCACGACGAGCAGCACGTTCCATCTGA
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