mRNA_P-wetherbeei_contig5348.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5348.3.1
Unique NamemRNA_P-wetherbeei_contig5348.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5348.3.1 vs. uniprot
Match: D7FSJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ0_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.410e-13
Identity = 35/47 (74.47%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:  148 VSDVTFFTHLSFSEHLPVFEELEACKYYVGPLHILQELKRVVEQTLG 288
            VS+VTFFTHL+FS +LP F+E+EAC+++VGPLHILQELK VVE+TLG
Sbjct:  741 VSEVTFFTHLTFSAYLPDFQEMEACRHFVGPLHILQELKWVVERTLG 787
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BLAST of mRNA_P-wetherbeei_contig5348.3.1 vs. uniprot
Match: A0A6H5K079_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K079_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.450e-13
Identity = 35/47 (74.47%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:  148 VSDVTFFTHLSFSEHLPVFEELEACKYYVGPLHILQELKRVVEQTLG 288
            VS+VTFFTHL+FS +LP F+E+EAC+++VGPLHILQELK VVE+TLG
Sbjct: 1071 VSEVTFFTHLTFSAYLPDFQEMEACRHFVGPLHILQELKWVVERTLG 1117
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BLAST of mRNA_P-wetherbeei_contig5348.3.1 vs. uniprot
Match: A0A835YHQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHQ7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.860e-9
Identity = 29/45 (64.44%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:  151 SDVTFFTHLSFSEHLPVFEELEACKYYVGPLHILQELKRVVEQTL 285
            S+V F+THLSFSE+LP  E+ +A +Y +GPLHILQEL+RVV++TL
Sbjct:  455 SEVYFYTHLSFSENLPALEDAQASRYLLGPLHILQELRRVVDRTL 499
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5348.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSJ0_ECTSI1.410e-1374.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K079_9PHAE1.450e-1374.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YHQ7_9STRA1.860e-964.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5348contigP-wetherbeei_contig5348:2125..2630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSJ0
PFAMsSTART
Model size507
Max annot lvl2759|Eukaryota
KEGG koko:K10779
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.32e-14
EggNOG OGsKOG2761@1|root,KOG2761@2759|Eukaryota
EC3.6.4.12
Descriptionlipid binding
Cds size504
COG categoryS
BRITEko00000,ko01000,ko03000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186799.815567-CDS-P-wetherbeei_contig5348:2126..26301683186799.815567-CDS-P-wetherbeei_contig5348:2126..2630Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5348 2127..2630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5348.3.1prot_P-wetherbeei_contig5348.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5348 2127..2630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5348.3.1

>prot_P-wetherbeei_contig5348.3.1 ID=prot_P-wetherbeei_contig5348.3.1|Name=mRNA_P-wetherbeei_contig5348.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
RSNSSAAIGAAAAATPAAAAPGRGRGIWGRSASPLPVPPPLPPPMPAEEV
SDVTFFTHLSFSEHLPVFEELEACKYYVGPLHILQELKRVVEQTLGGDDL
AAVEISGRLKEGDGGEGAVPLGSGGDRGGGEGGGGRRHRSQRAGNGSGIG
FSGEDGGGDGNISPDGST
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mRNA from alignment at P-wetherbeei_contig5348:2125..2630-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5348.3.1 ID=mRNA_P-wetherbeei_contig5348.3.1|Name=mRNA_P-wetherbeei_contig5348.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=506bp|location=Sequence derived from alignment at P-wetherbeei_contig5348:2125..2630- (Phaeothamnion wetherbeei SAG_119_79)
CGCTCCAATAGCTCAGCGGCAATCGGCGCCGCCGCCGCTGCCACCCCGGC
AGCGGCTGCTCCCGGGCGCGGTCGCGGCATCTGGGGCCGCAGCGCGAGTC
CGCTGCCGGTGCCACCGCCGCTGCCGCCGCCGATGCCGGCAGAGGAGGTG
TCGGACGTTACGTTCTTCACGCACCTCAGCTTTTCGGAGCACCTCCCGGT
ATTCGAGGAGCTCGAGGCCTGCAAGTATTACGTGGGTCCGCTCCACATCC
TGCAGGAGCTGAAGCGGGTCGTGGAACAGACGCTTGGCGGCGATGACCTC
GCCGCAGTGGAAATCTCCGGCCGCCTGAAGGAAGGCGACGGCGGCGAGGG
CGCCGTACCGCTGGGCAGCGGCGGCGATCGCGGCGGTGGCGAAGGCGGCG
GCGGACGGCGGCACCGTAGCCAGCGCGCTGGGAACGGCAGCGGGATCGGC
TTCAGTGGGGAGGACGGTGGCGGCGACGGCAACATCAGCCCAGATGGCAG
CACCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5348:2125..2630-

>mRNA_P-wetherbeei_contig5348.3.1 ID=mRNA_P-wetherbeei_contig5348.3.1|Name=mRNA_P-wetherbeei_contig5348.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig5348:2125..2630- (Phaeothamnion wetherbeei SAG_119_79)
CGCTCCAATAGCTCAGCGGCAATCGGCGCCGCCGCCGCTGCCACCCCGGC
AGCGGCTGCTCCCGGGCGCGGTCGCGGCATCTGGGGCCGCAGCGCGAGTC
CGCTGCCGGTGCCACCGCCGCTGCCGCCGCCGATGCCGGCAGAGGAGGTG
TCGGACGTTACGTTCTTCACGCACCTCAGCTTTTCGGAGCACCTCCCGGT
ATTCGAGGAGCTCGAGGCCTGCAAGTATTACGTGGGTCCGCTCCACATCC
TGCAGGAGCTGAAGCGGGTCGTGGAACAGACGCTTGGCGGCGATGACCTC
GCCGCAGTGGAAATCTCCGGCCGCCTGAAGGAAGGCGACGGCGGCGAGGG
CGCCGTACCGCTGGGCAGCGGCGGCGATCGCGGCGGTGGCGAAGGCGGCG
GCGGACGGCGGCACCGTAGCCAGCGCGCTGGGAACGGCAGCGGGATCGGC
TTCAGTGGGGAGGACGGTGGCGGCGACGGCAACATCAGCCCAGATGGCAG
CACC
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