mRNA_P-wetherbeei_contig53472.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53472.1.1
Unique NamemRNA_P-wetherbeei_contig53472.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53472.1.1 vs. uniprot
Match: A0A7S1ZXT0_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZXT0_TRICV)

HSP 1 Score: 135 bits (340), Expect = 1.010e-37
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 SVDNALVRPTDPVFVGFCVAAGAPCGNKSVGKRDPGERVGVIARRSGRPCVVEYSELPADLCRLRLADGRLAFGAGNICNHFLTRRFLEDVVLPASAGIHHVARKKI 321
            ++DNALVRP DPVF+G+C+  GA CGNK + K  P E+VGV+A R G+PCVVEYS+L  ++  +    GRL +GAGNICNH+ T  F+ DVV+P    ++HVA KKI
Sbjct:   11 AIDNALVRPADPVFIGYCIDQGADCGNKVLWKTGPHEKVGVVATRGGKPCVVEYSDLSREMAEMTDQGGRLVYGAGNICNHYYTLSFIRDVVVPNVGNMYHVASKKI 117          
BLAST of mRNA_P-wetherbeei_contig53472.1.1 vs. uniprot
Match: A0A835YRE5_9STRA (Udp-n-acetylglucosamine pyrophosphorylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRE5_9STRA)

HSP 1 Score: 140 bits (354), Expect = 3.340e-37
Identity = 72/111 (64.86%), Postives = 80/111 (72.07%), Query Frame = 1
Query:    1 SVDNALVRPTDPVFVGFCVAAGAPCGNKSVGKRDPGERVGVIARRSGRPCVVEYSELPADLCRLRLADGRLAFGAGNICNHFLTRRFLEDVVLPASAG----IHHVARKKI 321
            SVDNAL RP D  FVG CV AGA CG + V KRD GERVGV+ARR G+PCVVEY+ELP+ L   R  DGRLAFGAGNIC+HF T  F+ DV  PA AG     +HVARK I
Sbjct:  268 SVDNALARPGDAAFVGACVGAGAQCGAQCVWKRDAGERVGVMARRGGKPCVVEYTELPSALRDARGGDGRLAFGAGNICSHFYTLEFVRDVAAPALAGGGAVAYHVARKAI 378          
BLAST of mRNA_P-wetherbeei_contig53472.1.1 vs. uniprot
Match: B8LBN3_THAPS (Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBN3_THAPS)

HSP 1 Score: 136 bits (343), Expect = 1.190e-36
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 1
Query:    4 VDNALVRPTDPVFVGFCVAAGAPCGNKSVGKRDPGERVGVIARRSGRPCVVEYSELPADLCRLRLADGRLAFGAGNICNHFLTRRFLEDVVLPASAGIHHVARKKI 321
            VDNALV+P DP FVG+C++  A CGNK + K  P E+VGV+A + G+PC+VEYS++  ++   +  DGRL FGAGNICNHF T  FL DVV+P    ++HVARKKI
Sbjct:  155 VDNALVKPADPTFVGYCISQNADCGNKVLWKSSPDEKVGVVATKGGKPCIVEYSDISKEMSERKGDDGRLIFGAGNICNHFYTLDFLNDVVVPNLGNMYHVARKKI 260          
BLAST of mRNA_P-wetherbeei_contig53472.1.1 vs. uniprot
Match: A0A7S1CXC6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXC6_CYCTE)

HSP 1 Score: 131 bits (330), Expect = 4.690e-36
Identity = 56/107 (52.34%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 SVDNALVRPTDPVFVGFCVAAGAPCGNKSVGKRDPGERVGVIARRSGRPCVVEYSELPADLCRLRLADGRLAFGAGNICNHFLTRRFLEDVVLPASAGIHHVARKKI 321
            S+DNALV+P DP+F+G C+A GA CGNK + K    E+VGV+A  +G+PC+VEYS++  ++  +    GRL +GA NICNHF T  F+ DVV+P  + ++HVARKKI
Sbjct:   15 SIDNALVKPADPIFIGHCIAEGADCGNKVLWKSSAHEKVGVLAEMNGKPCIVEYSDISKEMAEMTDGKGRLVYGAANICNHFYTIDFISDVVVPNLSNLYHVARKKI 121          
BLAST of mRNA_P-wetherbeei_contig53472.1.1 vs. uniprot
Match: A0A6H5JKZ4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ4_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.020e-35
Identity = 64/114 (56.14%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    1 SVDNALVRPTDPVFVGFCVAAGAPCGNKSVGKRDPGERVGVIARRSGRPCVVEYSELPADLCRLRLAD-------GRLAFGAGNICNHFLTRRFLEDVVLPASAGIHHVARKKI 321
            S+DNALVR  DP F+G+C+   A CGNKSV K +PGE+VGV+ +R G+PCVVEYSE+  + C  R          GRL FGAGNICNH+ +  FLED VLP  A ++HVA KKI
Sbjct:  294 SIDNALVRVADPHFLGYCIEKKADCGNKSVWKSEPGEKVGVVVKRGGKPCVVEYSEMEKEACERREGSSNGTSGGGRLVFGAGNICNHYFSLAFLEDTVLPGMADMYHVAHKKI 407          
BLAST of mRNA_P-wetherbeei_contig53472.1.1 vs. uniprot
Match: A0A7S2YGQ1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YGQ1_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.490e-35
Identity = 60/107 (56.07%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    1 SVDNALVRPTDPVFVGFCVAAGAPCGNKSVGKRDPGERVGVIARRSGRPCVVEYSELPADLCRLRLADGRLAFGAGNICNHFLTRRFLEDVVLPASAGIHHVARKKI 321
            S+DNALV+P DP F+GFC+  GA CGNKS  K    E+VGV+A R+G PCVVEYSE+  ++       GRL FGAGNICNHF T  FL + VLP    ++H+A+KKI
Sbjct:   88 SIDNALVKPADPGFLGFCLEQGADCGNKSTWKSHAHEKVGVVALRAGEPCVVEYSEITQEMAERTDDQGRLVFGAGNICNHFYTLDFLRNTVLPNMGNLYHIAKKKI 194          
BLAST of mRNA_P-wetherbeei_contig53472.1.1 vs. uniprot
Match: A0A1Z5KQN2_FISSO (UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQN2_FISSO)

HSP 1 Score: 134 bits (336), Expect = 5.120e-35
Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 SVDNALVRPTDPVFVGFCVAAGAPCGNKSVGKRDPGERVGVIARRSGRPCVVEYSELPADLCRLRLADGRLAFGAGNICNHFLTRRFLEDVVLPASAGIHHVARKKI 321
            S+DNAL++P DPVF+G+C+  G+ CGNK   K D  E VGV+A RSG+PC+VEYSE+  ++      DGRL +GAGNICNHF T  F++D ++P    ++H+ARKKI
Sbjct:  243 SIDNALIKPADPVFMGYCINQGSDCGNKVCWKVDAAESVGVVATRSGKPCIVEYSEISKEMAESVDEDGRLVYGAGNICNHFYTIAFIKDKIIPNLGNLYHIARKKI 349          
BLAST of mRNA_P-wetherbeei_contig53472.1.1 vs. uniprot
Match: A0A448ZR23_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZR23_9STRA)

HSP 1 Score: 129 bits (323), Expect = 5.580e-35
Identity = 57/107 (53.27%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 SVDNALVRPTDPVFVGFCVAAGAPCGNKSVGKRDPGERVGVIARRSGRPCVVEYSELPADLCRLRLADGRLAFGAGNICNHFLTRRFLEDVVLPASAGIHHVARKKI 321
            S+DNAL +  DPVF+G CV   A CGNK+V K+ P E+VGV+A + G+PC+VEYSE+  ++      +GRL +GAGNICNHF T  FL D V+P    ++H+ARKKI
Sbjct:   17 SIDNALTKIADPVFIGHCVKTQADCGNKAVWKKGPHEKVGVLAEKGGKPCIVEYSEITTEMAEQTDGEGRLVYGAGNICNHFYTLDFLCDKVVPNLGNMYHIARKKI 123          
BLAST of mRNA_P-wetherbeei_contig53472.1.1 vs. uniprot
Match: K0ST08_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0ST08_THAOC)

HSP 1 Score: 134 bits (337), Expect = 5.620e-35
Identity = 59/106 (55.66%), Postives = 77/106 (72.64%), Query Frame = 1
Query:    4 VDNALVRPTDPVFVGFCVAAGAPCGNKSVGKRDPGERVGVIARRSGRPCVVEYSELPADLCRLRLADGRLAFGAGNICNHFLTRRFLEDVVLPASAGIHHVARKKI 321
            VDNALV+P DP FVG+CV   A  GNK + K  PGE+VGV+A + G+PC+VEYS++  ++   R  DGRL FGAGNICNHF T  FLE+ ++P    ++H+ARKKI
Sbjct:  279 VDNALVKPADPTFVGYCVKQDADVGNKVLWKTSPGEKVGVVASKGGKPCIVEYSDISKEMSERRGEDGRLVFGAGNICNHFYTLDFLENTIVPNLGSMYHIARKKI 384          
BLAST of mRNA_P-wetherbeei_contig53472.1.1 vs. uniprot
Match: D8LEL4_ECTSI (Udp-n-acetylglucosamine pyrophosphorylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL4_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 2.130e-34
Identity = 63/117 (53.85%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 SVDNALVRPTDPVFVGFCVAAGAPCGNKSVGKRDPGERVGVIARRSGRPCVVEYSELPADLCRLRLADG----------RLAFGAGNICNHFLTRRFLEDVVLPASAGIHHVARKKI 321
            S+DNALVR  DP F+G+C+   A CGNKSV K +PGE+VGV+ +R G+PCVVEYSE+  + C  R              RL FGAGNICNH+ +  FLED VLP  A ++HVA KKI
Sbjct:  297 SIDNALVRIADPHFLGYCIEKKADCGNKSVWKSEPGEKVGVVVKRGGKPCVVEYSEMEKEACERREGSSNGTXXXXXXXRLVFGAGNICNHYFSLAFLEDTVLPGMADMYHVAHKKI 413          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53472.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1ZXT0_TRICV1.010e-3755.14Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A835YRE5_9STRA3.340e-3764.86Udp-n-acetylglucosamine pyrophosphorylase n=1 Tax=... [more]
B8LBN3_THAPS1.190e-3656.60Predicted protein (Fragment) n=1 Tax=Thalassiosira... [more]
A0A7S1CXC6_CYCTE4.690e-3652.34Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A6H5JKZ4_9PHAE1.020e-3556.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S2YGQ1_9STRA2.490e-3556.07Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A1Z5KQN2_FISSO5.120e-3553.27UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine ... [more]
A0A448ZR23_9STRA5.580e-3553.27Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
K0ST08_THAOC5.620e-3555.66Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
D8LEL4_ECTSI2.130e-3453.85Udp-n-acetylglucosamine pyrophosphorylase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53472contigP-wetherbeei_contig53472:3..323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps36631
PFAMsUDPGP
Model size321
Max annot lvl2836|Bacillariophyta
KEGG rclassRC00002
KEGG koko:K00972
KEGG ReactionR00416
KEGG Pathwayko00520,ko01100,ko01130,map00520,map01100,map01130
KEGG ModuleM00361,M00362
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.95e-37
EggNOG OGsCOG4284@1|root,KOG2388@2759|Eukaryota,2XA55@2836|Bacillariophyta
EC2.7.7.23,2.7.7.83
DescriptionUTP--glucose-1-phosphate uridylyltransferase
Cds size321
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186799.6813014-CDS-P-wetherbeei_contig53472:2..3231683186799.6813014-CDS-P-wetherbeei_contig53472:2..323Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53472 3..323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53472.1.1prot_P-wetherbeei_contig53472.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53472 3..323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53472.1.1

>prot_P-wetherbeei_contig53472.1.1 ID=prot_P-wetherbeei_contig53472.1.1|Name=mRNA_P-wetherbeei_contig53472.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
SVDNALVRPTDPVFVGFCVAAGAPCGNKSVGKRDPGERVGVIARRSGRPC
VVEYSELPADLCRLRLADGRLAFGAGNICNHFLTRRFLEDVVLPASAGIH
HVARKKI
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mRNA from alignment at P-wetherbeei_contig53472:3..323+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53472.1.1 ID=mRNA_P-wetherbeei_contig53472.1.1|Name=mRNA_P-wetherbeei_contig53472.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig53472:3..323+ (Phaeothamnion wetherbeei SAG_119_79)
TCCGTCGACAATGCGCTTGTACGCCCGACCGACCCCGTCTTTGTCGGCTT TTGCGTCGCCGCCGGCGCACCCTGTGGCAACAAGTCTGTCGGCAAGCGCG ATCCAGGCGAGCGCGTCGGTGTAATCGCGCGCCGTAGCGGCCGCCCGTGC GTCGTTGAGTACAGCGAGCTGCCCGCAGATCTCTGCCGGTTGCGGCTGGC GGACGGCCGGCTGGCGTTCGGCGCCGGCAATATTTGCAACCACTTCCTGA CGCGGCGGTTTCTGGAGGACGTGGTCCTGCCAGCATCCGCCGGCATCCAC CACGTCGCCCGCAAGAAGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53472:3..323+

>mRNA_P-wetherbeei_contig53472.1.1 ID=mRNA_P-wetherbeei_contig53472.1.1|Name=mRNA_P-wetherbeei_contig53472.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig53472:3..323+ (Phaeothamnion wetherbeei SAG_119_79)
TCCGTCGACAATGCGCTTGTACGCCCGACCGACCCCGTCTTTGTCGGCTT
TTGCGTCGCCGCCGGCGCACCCTGTGGCAACAAGTCTGTCGGCAAGCGCG
ATCCAGGCGAGCGCGTCGGTGTAATCGCGCGCCGTAGCGGCCGCCCGTGC
GTCGTTGAGTACAGCGAGCTGCCCGCAGATCTCTGCCGGTTGCGGCTGGC
GGACGGCCGGCTGGCGTTCGGCGCCGGCAATATTTGCAACCACTTCCTGA
CGCGGCGGTTTCTGGAGGACGTGGTCCTGCCAGCATCCGCCGGCATCCAC
CACGTCGCCCGCAAGAAGATC
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