mRNA_P-wetherbeei_contig53462.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53462.1.1
Unique NamemRNA_P-wetherbeei_contig53462.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53462.1.1 vs. uniprot
Match: UPI0017DCF53D (Uncharacterized protein n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI0017DCF53D)

HSP 1 Score: 119 bits (298), Expect = 1.460e-31
Identity = 57/130 (43.85%), Postives = 80/130 (61.54%), Query Frame = 1 
Query:   37 ADDVLIGTWDIVEGAAAPWAPASERADLAAIAKRLVKTQVVFAAHAVTTTAKPFACKKAFYEATEYSPDAMFRGGLPELNQDRIVRDMGFARGDVPGIDVMCGSETLSYHFRDRVTIMVAIDNILYTLKR 426
            A++ LIG W I E    PW  + ER  L    ++LV+T++ F   A+ +  +  ACK+A Y+   Y  DA+FRG LP+ +QDRI R+ G  R DVP +DV C     +YHFRDR T + A D+++YTLKR
Sbjct:   28 AENGLIGKWHITEAVPGPWVRSKERNGLTEQGRKLVETEITFEDGAIVSKHQGLACKRALYQTGTYPTDALFRGSLPDGSQDRIAREFGLNRADVPSVDVDCAGGHFTYHFRDRNTALFAYDDVIYTLKR 157
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BLAST of mRNA_P-wetherbeei_contig53462.1.1 vs. uniprot
Match: A0A6M4IZ77_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonas groenlandica TaxID=2732249 RepID=A0A6M4IZ77_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 7.310e-13
Identity = 53/146 (36.30%), Postives = 69/146 (47.26%), Query Frame = 1 
Query:   13 ASAQAKPPADDV---LIGTWDIVEGAAAPW----APASERADLAAIAKRLVKTQVVFAAHAVTTTAKPFACKKAFYEATEYSPDAMFRGGLPELNQDRIVRDMGFARGDVPGIDVMCGSETLSYHFRDRVTIMVAIDNILYTLKRG 429
            A + A+P A  +   L GTW I  G  APW    +P+  RA   A    L  T +V           PFAC    YE T   P+A+F+G LP        R +GFA G V GI + C S     H  D   +MVA+DN+++TL R 
Sbjct:   27 AQSLARPSASTLSPSLFGTWRIRSGIVAPWVTTDSPSWNRAAYLAHLVELRPTALVGPG--------PFACAAPRYEPTLMPPEALFQGNLP-APAATTARALGFASGLVRGISIRCASGIFEVHVVDATHLMVAVDNVIWTLDRS 163
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53462.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0017DCF53D1.460e-3143.85Uncharacterized protein n=1 Tax=Rhodoplanes sp. Ta... [more]
A0A6M4IZ77_9BACT7.310e-1336.30Uncharacterized protein n=1 Tax=Gemmatimonas groen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53462contigP-wetherbeei_contig53462:10..444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1038862.KB893843_gene399
Model size435
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.03e-14
EggNOG OGs2E2WI@1|root,32XXU@2|Bacteria,1RA3Z@1224|Proteobacteria,2U6TE@28211|Alphaproteobacteria,3JYC3@41294|Bradyrhizobiaceae
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186799.5734785-UTR-P-wetherbeei_contig53462:9..181683186799.5734785-UTR-P-wetherbeei_contig53462:9..18Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53462 10..18 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186799.5853636-CDS-P-wetherbeei_contig53462:18..4441683186799.5853636-CDS-P-wetherbeei_contig53462:18..444Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53462 19..444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53462.1.1prot_P-wetherbeei_contig53462.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53462 19..444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53462.1.1

>prot_P-wetherbeei_contig53462.1.1 ID=prot_P-wetherbeei_contig53462.1.1|Name=mRNA_P-wetherbeei_contig53462.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MASAQAKPPADDVLIGTWDIVEGAAAPWAPASERADLAAIAKRLVKTQVV
FAAHAVTTTAKPFACKKAFYEATEYSPDAMFRGGLPELNQDRIVRDMGFA
RGDVPGIDVMCGSETLSYHFRDRVTIMVAIDNILYTLKRGK*
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mRNA from alignment at P-wetherbeei_contig53462:10..444+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53462.1.1 ID=mRNA_P-wetherbeei_contig53462.1.1|Name=mRNA_P-wetherbeei_contig53462.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig53462:10..444+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGTTTTGATGGCGTCCGCCCAAGCGAAGCCGCCCGCCGACGACGTGCT
GATCGGCACCTGGGACATTGTCGAGGGCGCCGCCGCGCCTTGGGCGCCGG
CCTCGGAGCGCGCCGATCTCGCCGCCATCGCCAAGCGGCTGGTCAAGACC
CAGGTCGTGTTCGCCGCCCATGCCGTAACGACGACGGCGAAACCGTTCGC
CTGCAAGAAAGCGTTTTACGAGGCCACGGAATATTCGCCCGACGCGATGT
TCCGCGGCGGGCTGCCCGAACTCAACCAGGACCGCATCGTCCGCGACATG
GGCTTCGCCCGCGGCGACGTCCCCGGCATCGACGTGATGTGTGGATCGGA
AACCCTATCCTATCATTTCCGCGACCGGGTTACGATCATGGTCGCGATCG
ACAATATTTTGTACACGCTCAAGCGCGGCAAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53462:10..444+

>mRNA_P-wetherbeei_contig53462.1.1 ID=mRNA_P-wetherbeei_contig53462.1.1|Name=mRNA_P-wetherbeei_contig53462.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig53462:10..444+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTCCGCCCAAGCGAAGCCGCCCGCCGACGACGTGCTGATCGGCAC
CTGGGACATTGTCGAGGGCGCCGCCGCGCCTTGGGCGCCGGCCTCGGAGC
GCGCCGATCTCGCCGCCATCGCCAAGCGGCTGGTCAAGACCCAGGTCGTG
TTCGCCGCCCATGCCGTAACGACGACGGCGAAACCGTTCGCCTGCAAGAA
AGCGTTTTACGAGGCCACGGAATATTCGCCCGACGCGATGTTCCGCGGCG
GGCTGCCCGAACTCAACCAGGACCGCATCGTCCGCGACATGGGCTTCGCC
CGCGGCGACGTCCCCGGCATCGACGTGATGTGTGGATCGGAAACCCTATC
CTATCATTTCCGCGACCGGGTTACGATCATGGTCGCGATCGACAATATTT
TGTACACGCTCAAGCGCGGCAAATAG
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