mRNA_P-wetherbeei_contig5346.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5346.1.1
Unique NamemRNA_P-wetherbeei_contig5346.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5346.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5346contigP-wetherbeei_contig5346:3148..3898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size751
Hectar predicted targeting categoryother localisation
Exons1
Cds size498
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186799.5063574-UTR-P-wetherbeei_contig5346:3147..33621683186799.5063574-UTR-P-wetherbeei_contig5346:3147..3362Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5346 3148..3362 -
1683186799.5266745-UTR-P-wetherbeei_contig5346:3860..38981683186799.5266745-UTR-P-wetherbeei_contig5346:3860..3898Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5346 3861..3898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186799.516577-CDS-P-wetherbeei_contig5346:3362..38601683186799.516577-CDS-P-wetherbeei_contig5346:3362..3860Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5346 3363..3860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5346.1.1prot_P-wetherbeei_contig5346.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5346 3363..3860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5346.1.1

>prot_P-wetherbeei_contig5346.1.1 ID=prot_P-wetherbeei_contig5346.1.1|Name=mRNA_P-wetherbeei_contig5346.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MLCRRFRRIPSKTITEAGGRCVLADVPDETLLHGRGQGAPAVAAHLRRRQ
RGRGSLHCSRYHERIHDGGVGRPDAHRRLRQEHGDDAALQDPQADPKIHQ
HGPGRLQGGHGRRLRRRRRVRAGRVLRRAPQPRQHPWLGHCLGGGEIGGI
MADKNGGREVKGKHR*
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mRNA from alignment at P-wetherbeei_contig5346:3148..3898-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5346.1.1 ID=mRNA_P-wetherbeei_contig5346.1.1|Name=mRNA_P-wetherbeei_contig5346.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=751bp|location=Sequence derived from alignment at P-wetherbeei_contig5346:3148..3898- (Phaeothamnion wetherbeei SAG_119_79)
TCGCTGCCGCTGCGGTCGCCGGGACAACGGCTCCCGCCATGCTGTGCCGA
CGCTTCCGACGCATCCCATCCAAAACCATTACCGAAGCAGGAGGCCGCTG
TGTTCTCGCCGACGTGCCTGACGAAACGCTCCTGCATGGCCGAGGGCAAG
GCGCTCCCGCGGTCGCAGCTCATCTCCGTCGGCGGCAGCGAGGACGTGGT
TCCCTTCATTGTTCTCGCTATCACGAGCGAATACATGATGGTGGCGTGGG
GCGACCTGATGCACATCGCCGTCTACGTCAAGAACACGGCGACGATGCCG
CTCTCCAAGATCCACAAGCGGATCCGAAAATACACCAACACGGTCCAGGG
CGGCTACAAGGCGGTCACGGCCGCCGGCTGCGCCGCCGACGACGAGTACG
CGCCGGAAGGGTTCTGCGACGCGCGCCGCAACCTCGTCAGCATCCTTGGT
TAGGACATTGCCTGGGTGGTGGAGAGATTGGTGGGATTATGGCCGATAAG
AACGGTGGGAGGGAAGTGAAGGGCAAACATCGTTAGTTGAAGGGTCAGGG
GAAACAAATTGAGAGCAAGAATGCTTACACGTAAGCCACGCTCTTTACCG
CATGAAGTAATTGTTGAAGTGCTTTACACAAGGCCGGGGTGGCGGGGTTA
TGTGGAATGCGGCCTGTCGCCTGCCTTTGAAGGCCGGGTGTTCGCAGCAG
CAAACCGCCCTGGACTCGAACGGCTAACTTCCAATAAAGAACAAAGAAAG
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5346:3148..3898-

>mRNA_P-wetherbeei_contig5346.1.1 ID=mRNA_P-wetherbeei_contig5346.1.1|Name=mRNA_P-wetherbeei_contig5346.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig5346:3148..3898- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGTGCCGACGCTTCCGACGCATCCCATCCAAAACCATTACCGAAGC
AGGAGGCCGCTGTGTTCTCGCCGACGTGCCTGACGAAACGCTCCTGCATG
GCCGAGGGCAAGGCGCTCCCGCGGTCGCAGCTCATCTCCGTCGGCGGCAG
CGAGGACGTGGTTCCCTTCATTGTTCTCGCTATCACGAGCGAATACATGA
TGGTGGCGTGGGGCGACCTGATGCACATCGCCGTCTACGTCAAGAACACG
GCGACGATGCCGCTCTCCAAGATCCACAAGCGGATCCGAAAATACACCAA
CACGGTCCAGGGCGGCTACAAGGCGGTCACGGCCGCCGGCTGCGCCGCCG
ACGACGAGTACGCGCCGGAAGGGTTCTGCGACGCGCGCCGCAACCTCGTC
AGCATCCTTGGTTAGGACATTGCCTGGGTGGTGGAGAGATTGGTGGGATT
ATGGCCGATAAGAACGGTGGGAGGGAAGTGAAGGGCAAACATCGTTAG
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