mRNA_P-wetherbeei_contig53433.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53433.1.1
Unique NamemRNA_P-wetherbeei_contig53433.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53433.1.1 vs. uniprot
Match: A0A7W0AB92_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0AB92_9CHLR)

HSP 1 Score: 103 bits (258), Expect = 1.380e-26
Identity = 58/88 (65.91%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:    7 DTRRAIVERIEAIAAWRREREFQDMLGLGPEAAARSRRSADGLDALAASIATLADDDPRLVRLRRAAFRGEVFDPGATLLTELGRFRF 270
            D R++I ERI +IA WRRERE QDM GLGPE A RSRRSADGL  LA  +  L  DD RL RL   AF G  FDPGAT+L ELGRFRF
Sbjct:    4 DVRQSISERIASIAEWRREREQQDMYGLGPEVAVRSRRSADGLRELAHHVLALPADDERLTRLTVLAFYGGQFDPGATMLHELGRFRF 91
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BLAST of mRNA_P-wetherbeei_contig53433.1.1 vs. uniprot
Match: A0A7W0PMC3_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0PMC3_9CHLR)

HSP 1 Score: 102 bits (253), Expect = 7.900e-26
Identity = 56/88 (63.64%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:    7 DTRRAIVERIEAIAAWRREREFQDMLGLGPEAAARSRRSADGLDALAASIATLADDDPRLVRLRRAAFRGEVFDPGATLLTELGRFRF 270
            D RR+I ERI +IA WRRERE QD+ G GP+ A RSRRSA+GL  LA  + +L  DD RLVRL   AF G+ FDPGAT+L ELGRFRF
Sbjct:    4 DVRRSISERILSIAEWRRERERQDLYGHGPDVAVRSRRSANGLIELAGHVLSLPADDARLVRLTVVAFYGQKFDPGATMLHELGRFRF 91
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BLAST of mRNA_P-wetherbeei_contig53433.1.1 vs. uniprot
Match: A0A838GH54_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A838GH54_9CHLR)

HSP 1 Score: 97.4 bits (241), Expect = 5.190e-24
Identity = 55/88 (62.50%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:    7 DTRRAIVERIEAIAAWRREREFQDMLGLGPEAAARSRRSADGLDALAASIATLADDDPRLVRLRRAAFRGEVFDPGATLLTELGRFRF 270
            D RR+I ERI +IA WRRERE +D+ G GPE A RSRRSADGL  LA  + +L   DPRL RL   AF    FDPGAT+L ELGRFRF
Sbjct:    4 DVRRSISERIMSIAEWRREREQRDLYGHGPEVAVRSRRSADGLVELAGHVLSLPAHDPRLARLTVLAFYKGHFDPGATMLHELGRFRF 91
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BLAST of mRNA_P-wetherbeei_contig53433.1.1 vs. uniprot
Match: A0A7V8WS48_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8WS48_9CHLR)

HSP 1 Score: 87.8 bits (216), Expect = 2.240e-20
Identity = 54/90 (60.00%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    7 DTRRAIVERIEAIAAWRREREFQDMLGLGPEAAA--RSRRSADGLDALAASIATLADDDPRLVRLRRAAFRGEVFDPGATLLTELGRFRF 270
            D R AIVERI+A+A WRRER   D     P AA   R RRSA GLD LA  +A L  DD RL  L R AF+G+ F PGA+LLTELGRFRF
Sbjct:    5 DVRPAIVERIQAVAVWRRERALYD-----PAAAIDPRQRRSAAGLDELADHVAALQPDDDRLRELHRLAFQGDQFAPGASLLTELGRFRF 89
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BLAST of mRNA_P-wetherbeei_contig53433.1.1 vs. uniprot
Match: A0A3A0ABF5_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0ABF5_9CHLR)

HSP 1 Score: 53.1 bits (126), Expect = 9.500e-7
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:   16 RAIVERIEAIAAWRREREFQDMLGLGPEAAARSRRSADGLDALAASIATLADDDPRLVRLRRAAFRGEVFDPGATLLTELGRFRF 270
            R++ + +  +AAWR++R + D     P    R+ +SA GL+ALAA I  L +D+PRL++L   A   + F PG  +  E+ RFRF
Sbjct:    8 RSVADYLLDVAAWRKQR-YDD-----PHRDPRNLQSAAGLEALAAFILELPEDEPRLLKLAELASSMDSFAPGQQVTWEIARFRF 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53433.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7W0AB92_9CHLR1.380e-2665.91Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A7W0PMC3_9CHLR7.900e-2663.64Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A838GH54_9CHLR5.190e-2462.50Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A7V8WS48_9CHLR2.240e-2060.00Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A3A0ABF5_9CHLR9.500e-738.82Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53433contigP-wetherbeei_contig53433:266..535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size270
Hectar predicted targeting categoryother localisation
Exons1
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186799.1858582-CDS-P-wetherbeei_contig53433:265..5351683186799.1858582-CDS-P-wetherbeei_contig53433:265..535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53433 266..535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53433.1.1prot_P-wetherbeei_contig53433.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53433 266..535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53433.1.1

>prot_P-wetherbeei_contig53433.1.1 ID=prot_P-wetherbeei_contig53433.1.1|Name=mRNA_P-wetherbeei_contig53433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MSDTRRAIVERIEAIAAWRREREFQDMLGLGPEAAARSRRSADGLDALAA
SIATLADDDPRLVRLRRAAFRGEVFDPGATLLTELGRFRF
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mRNA from alignment at P-wetherbeei_contig53433:266..535+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53433.1.1 ID=mRNA_P-wetherbeei_contig53433.1.1|Name=mRNA_P-wetherbeei_contig53433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig53433:266..535+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGACACCCGGCGCGCGATAGTGGAGCGGATCGAGGCGATCGCGGC
CTGGCGGCGAGAACGGGAGTTCCAGGACATGCTGGGTCTCGGGCCGGAAG
CCGCCGCCCGCAGCCGCCGCTCCGCCGACGGGCTGGACGCCCTCGCTGCC
TCCATCGCGACCCTCGCGGACGATGATCCCCGGCTCGTCCGCCTGCGAAG
GGCGGCCTTCCGGGGGGAGGTCTTCGATCCCGGCGCCACGCTGCTCACCG
AACTTGGCCGCTTCCGCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53433:266..535+

>mRNA_P-wetherbeei_contig53433.1.1 ID=mRNA_P-wetherbeei_contig53433.1.1|Name=mRNA_P-wetherbeei_contig53433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig53433:266..535+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGACACCCGGCGCGCGATAGTGGAGCGGATCGAGGCGATCGCGGC
CTGGCGGCGAGAACGGGAGTTCCAGGACATGCTGGGTCTCGGGCCGGAAG
CCGCCGCCCGCAGCCGCCGCTCCGCCGACGGGCTGGACGCCCTCGCTGCC
TCCATCGCGACCCTCGCGGACGATGATCCCCGGCTCGTCCGCCTGCGAAG
GGCGGCCTTCCGGGGGGAGGTCTTCGATCCCGGCGCCACGCTGCTCACCG
AACTTGGCCGCTTCCGCTTC
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