mRNA_P-wetherbeei_contig53432.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53432.1.1
Unique NamemRNA_P-wetherbeei_contig53432.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53432.1.1 vs. uniprot
Match: UPI000E0D2D1B (acetate--CoA ligase family protein n=1 Tax=Rhodoferax ferrireducens TaxID=192843 RepID=UPI000E0D2D1B)

HSP 1 Score: 307 bits (786), Expect = 4.700e-98
Identity = 161/179 (89.94%), Postives = 169/179 (94.41%), Query Frame = 1 
Query:    1 SLADVPETPDVVVLAVGQEQVPEMVRQCATRGVGTAVVMSSGFGETGAEGVERQRVLVEQARHLGVRLVGPNAQGIANFRTGAVLNFSTMFMEIAPKDGPVAIISQSGAASVMPYAMLRERDIGVRYLVASGNDADASVSELALVAAADPEIRVVLLYIESLSDPETLAEVARLACARG 537
            SLAD+P+TPDV VLAVGQ+QVPEM+RQCA  GVG AVVMSSGFGETGAEGV+RQR LVE AR LGVRL+GPNAQGIANFRTGAVLNFSTMFME+APKDGPVAIISQSGAASVMPYAMLRERDIGVRYLVASGNDADASVSELALVAAADPE+RVVLLYIESLSDPE LA VARLA ARG
Sbjct:   65 SLADLPKTPDVAVLAVGQDQVPEMIRQCAIHGVGVAVVMSSGFGETGAEGVKRQRALVELARQLGVRLIGPNAQGIANFRTGAVLNFSTMFMEVAPKDGPVAIISQSGAASVMPYAMLRERDIGVRYLVASGNDADASVSELALVAAADPEVRVVLLYIESLSDPEMLANVARLANARG 243
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BLAST of mRNA_P-wetherbeei_contig53432.1.1 vs. uniprot
Match: UPI0004914364 (acetate--CoA ligase family protein n=1 Tax=Azohydromonas australica TaxID=364039 RepID=UPI0004914364)

HSP 1 Score: 292 bits (748), Expect = 2.140e-92
Identity = 153/179 (85.47%), Postives = 166/179 (92.74%), Query Frame = 1 
Query:    1 SLADVPETPDVVVLAVGQEQVPEMVRQCATRGVGTAVVMSSGFGETGAEGVERQRVLVEQARHLGVRLVGPNAQGIANFRTGAVLNFSTMFMEIAPKDGPVAIISQSGAASVMPYAMLRERDIGVRYLVASGNDADASVSELALVAAADPEIRVVLLYIESLSDPETLAEVARLACARG 537
            SLA +PE PDV V+AVGQEQV E++RQCA RGVGTAVVMSSGFGETGAEG+ RQR LVE+AR LGVRL+GPNAQGIANF +GAVLNFSTMFME+AP+DGPVAI+SQSGAASVMPYA+LRER IGVRYLVASGNDADASV ELALVAAADP+IRVVLLYIESLSDP TLAEVARLA ARG
Sbjct:   64 SLAALPEAPDVAVVAVGQEQVAEVIRQCAARGVGTAVVMSSGFGETGAEGLARQRALVEEARRLGVRLIGPNAQGIANFGSGAVLNFSTMFMEVAPQDGPVAIVSQSGAASVMPYALLRERGIGVRYLVASGNDADASVGELALVAAADPDIRVVLLYIESLSDPATLAEVARLANARG 242
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BLAST of mRNA_P-wetherbeei_contig53432.1.1 vs. uniprot
Match: A0A520GB17_9BURK (CoA-binding protein n=1 Tax=Variovorax sp. TaxID=1871043 RepID=A0A520GB17_9BURK)

HSP 1 Score: 273 bits (699), Expect = 3.810e-85
Identity = 139/179 (77.65%), Postives = 157/179 (87.71%), Query Frame = 1 
Query:    1 SLADVPETPDVVVLAVGQEQVPEMVRQCATRGVGTAVVMSSGFGETGAEGVERQRVLVEQARHLGVRLVGPNAQGIANFRTGAVLNFSTMFMEIAPKDGPVAIISQSGAASVMPYAMLRERDIGVRYLVASGNDADASVSELALVAAADPEIRVVLLYIESLSDPETLAEVARLACARG 537
            SL   PE PDV ++AVGQ+ V  ++ QCA RGVGTA+VMSSGFGETG +G+ RQ+ LV QAR LG+RLVGPNAQG+ANF+TGAV+NFSTMFME+AP+DGPVAI+SQSGAASVMPYAMLRER +GVRYLVASGNDADASV ELAL AAADPEIRVVL+YIESLSDP  LAEVARL  ARG
Sbjct:   65 SLDAAPEAPDVAIVAVGQDAVAGVIDQCAARGVGTAIVMSSGFGETGGDGIARQQALVAQARRLGIRLVGPNAQGVANFQTGAVMNFSTMFMEVAPQDGPVAIVSQSGAASVMPYAMLRERGVGVRYLVASGNDADASVCELALAAAADPEIRVVLMYIESLSDPAMLAEVARLTAARG 243
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BLAST of mRNA_P-wetherbeei_contig53432.1.1 vs. uniprot
Match: UPI001F399C7D (acetate--CoA ligase family protein n=1 Tax=Caenimonas soli TaxID=2735555 RepID=UPI001F399C7D)

HSP 1 Score: 272 bits (695), Expect = 1.180e-84
Identity = 142/179 (79.33%), Postives = 159/179 (88.83%), Query Frame = 1 
Query:    1 SLADVPETPDVVVLAVGQEQVPEMVRQCATRGVGTAVVMSSGFGETGAEGVERQRVLVEQARHLGVRLVGPNAQGIANFRTGAVLNFSTMFMEIAPKDGPVAIISQSGAASVMPYAMLRERDIGVRYLVASGNDADASVSELALVAAADPEIRVVLLYIESLSDPETLAEVARLACARG 537
            SL  +PETPDV V+AVG + V ++VRQCA RGV +AVVMSSGFGETG EG++RQR LV QAR LGVRLVGPNAQGIANF+TGAVLNFSTMFME+APKDGPVAI+SQSGAASVMPYAMLRER +GVRY+VASGNDAD SV ELAL AAADPE+RV+LLYIESL+DP  LAE AR+A ARG
Sbjct:   57 SLEALPETPDVAVVAVGGDHVLDVVRQCAARGVRSAVVMSSGFGETGPEGMQRQRELVAQARSLGVRLVGPNAQGIANFQTGAVLNFSTMFMEVAPKDGPVAIVSQSGAASVMPYAMLRERGVGVRYVVASGNDADVSVCELALAAAADPEVRVLLLYIESLADPAVLAEAARVAHARG 235
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BLAST of mRNA_P-wetherbeei_contig53432.1.1 vs. uniprot
Match: T1XI84_VARPD (Putative acyl-CoA ligase n=2 Tax=Variovorax paradoxus TaxID=34073 RepID=T1XI84_VARPD)

HSP 1 Score: 272 bits (695), Expect = 1.490e-84
Identity = 138/179 (77.09%), Postives = 159/179 (88.83%), Query Frame = 1 
Query:    1 SLADVPETPDVVVLAVGQEQVPEMVRQCATRGVGTAVVMSSGFGETGAEGVERQRVLVEQARHLGVRLVGPNAQGIANFRTGAVLNFSTMFMEIAPKDGPVAIISQSGAASVMPYAMLRERDIGVRYLVASGNDADASVSELALVAAADPEIRVVLLYIESLSDPETLAEVARLACARG 537
            SL  VPETPDV ++AVGQ+ V  ++ QCA RGVG+A+VMSSGFGETG++GV RQ+ LV QAR LG+RL+GPNAQG+ANF TGAV+NFSTMFME+AP+DGPVAI+SQSGAASVMPYAMLRER +GVRYLVASGNDADA+V ELAL AAADP IRVVL+YIESL+DP  LAEVARLA ARG
Sbjct:   65 SLDAVPETPDVAIVAVGQDAVAGVIDQCAARGVGSAIVMSSGFGETGSDGVARQQALVAQARRLGIRLIGPNAQGVANFSTGAVMNFSTMFMEVAPQDGPVAIVSQSGAASVMPYAMLRERGVGVRYLVASGNDADATVCELALAAAADPAIRVVLMYIESLNDPAMLAEVARLAAARG 243
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BLAST of mRNA_P-wetherbeei_contig53432.1.1 vs. uniprot
Match: A0A1H7EBA5_9BURK (Acyl-CoA synthetase (NDP forming) n=2 Tax=unclassified Variovorax TaxID=663243 RepID=A0A1H7EBA5_9BURK)

HSP 1 Score: 271 bits (692), Expect = 5.810e-84
Identity = 140/179 (78.21%), Postives = 154/179 (86.03%), Query Frame = 1 
Query:    1 SLADVPETPDVVVLAVGQEQVPEMVRQCATRGVGTAVVMSSGFGETGAEGVERQRVLVEQARHLGVRLVGPNAQGIANFRTGAVLNFSTMFMEIAPKDGPVAIISQSGAASVMPYAMLRERDIGVRYLVASGNDADASVSELALVAAADPEIRVVLLYIESLSDPETLAEVARLACARG 537
            SL  VPE PDV ++AVGQ+ VP ++ QCA RGVG A+VMSSGFGETG+ GV  Q  LV QAR LGVRLVGPNAQG+ANF TGAV+NFSTMFME+AP+DGP+AI+SQSGAASVMPYAMLRER IGVRYLVASGNDADASV ELAL AAADPEIRVVL+YIESL DP  LAEVARL  ARG
Sbjct:   65 SLDAVPEVPDVAIVAVGQDAVPGVIDQCAARGVGAAIVMSSGFGETGSAGVALQHALVAQARRLGVRLVGPNAQGVANFSTGAVMNFSTMFMEVAPQDGPIAIVSQSGAASVMPYAMLRERGIGVRYLVASGNDADASVCELALAAAADPEIRVVLMYIESLGDPAMLAEVARLTAARG 243
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BLAST of mRNA_P-wetherbeei_contig53432.1.1 vs. uniprot
Match: A0A2W5RVM9_VARPD (CoA-binding protein n=1 Tax=Variovorax paradoxus TaxID=34073 RepID=A0A2W5RVM9_VARPD)

HSP 1 Score: 270 bits (690), Expect = 8.140e-84
Identity = 135/179 (75.42%), Postives = 157/179 (87.71%), Query Frame = 1 
Query:    1 SLADVPETPDVVVLAVGQEQVPEMVRQCATRGVGTAVVMSSGFGETGAEGVERQRVLVEQARHLGVRLVGPNAQGIANFRTGAVLNFSTMFMEIAPKDGPVAIISQSGAASVMPYAMLRERDIGVRYLVASGNDADASVSELALVAAADPEIRVVLLYIESLSDPETLAEVARLACARG 537
            SLAD+PE PD  ++AVGQ+ V +++ QC  RG+GTA+VMSSGFGETGA G ERQ  LV QAR LGVRL+GPNAQG+ANFRTGAV+NFSTMFME+ P+DGPVAI+SQSGAASVMPYAMLRER +GVRY+VASGNDADASV+ELAL AAADP+IRVVL+YIE+L+DP  LAEVAR   ARG
Sbjct:   65 SLADLPEVPDAAIVAVGQDAVADVIGQCGARGIGTAIVMSSGFGETGAAGTERQHDLVAQARRLGVRLIGPNAQGLANFRTGAVMNFSTMFMEVPPQDGPVAIVSQSGAASVMPYAMLRERGVGVRYVVASGNDADASVNELALAAAADPQIRVVLMYIEALADPAVLAEVARTTRARG 243
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BLAST of mRNA_P-wetherbeei_contig53432.1.1 vs. uniprot
Match: UPI00164DC65C (Acetate--CoA ligase family protein n=2 Tax=Ramlibacter sp. GTP1 TaxID=2079448 RepID=UPI00164DC65C)

HSP 1 Score: 268 bits (685), Expect = 4.030e-83
Identity = 140/179 (78.21%), Postives = 158/179 (88.27%), Query Frame = 1 
Query:    1 SLADVPETPDVVVLAVGQEQVPEMVRQCATRGVGTAVVMSSGFGETGAEGVERQRVLVEQARHLGVRLVGPNAQGIANFRTGAVLNFSTMFMEIAPKDGPVAIISQSGAASVMPYAMLRERDIGVRYLVASGNDADASVSELALVAAADPEIRVVLLYIESLSDPETLAEVARLACARG 537
            SLAD+PE PDV VLAV  +QV  ++RQCA RGV +AVVMSSGFGETGA G +RQ  LVE+AR LGVRL+GPNAQG+ANF+TGAVLNFSTMFME+ P+DGPVA+ISQSGAASVMPYA+LRER IGVRY+VASGNDADASV ELAL AAADP+IRV+LLYIESLSDP  LAE ARLA +RG
Sbjct:   64 SLADLPEAPDVAVLAVAGDQVQGVLRQCAARGVRSAVVMSSGFGETGAAGAQRQAQLVEEARALGVRLIGPNAQGVANFQTGAVLNFSTMFMEVPPQDGPVAVISQSGAASVMPYALLRERGIGVRYVVASGNDADASVCELALTAAADPDIRVLLLYIESLSDPAMLAEAARLARSRG 242
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BLAST of mRNA_P-wetherbeei_contig53432.1.1 vs. uniprot
Match: UPI0008246DAD (acetate--CoA ligase family protein n=1 Tax=Xylophilus ampelinus TaxID=54067 RepID=UPI0008246DAD)

HSP 1 Score: 268 bits (685), Expect = 4.460e-83
Identity = 135/179 (75.42%), Postives = 156/179 (87.15%), Query Frame = 1 
Query:    1 SLADVPETPDVVVLAVGQEQVPEMVRQCATRGVGTAVVMSSGFGETGAEGVERQRVLVEQARHLGVRLVGPNAQGIANFRTGAVLNFSTMFMEIAPKDGPVAIISQSGAASVMPYAMLRERDIGVRYLVASGNDADASVSELALVAAADPEIRVVLLYIESLSDPETLAEVARLACARG 537
            SLAD+PE PD  ++AVGQ+ V +++ QC  RG+GTA+VMSSGFGETGA GV RQR L+ QAR LGVRL+GPNAQG+ANF TGAV+NFSTMFME+ P+DGPVAI+SQSGAASVMPYAMLRER +GVRYLVASGNDADASV+ELAL AAADP IRVVL+YIE+L+DP  LAEVA  A ARG
Sbjct:   65 SLADLPEVPDAAIVAVGQDGVADVIGQCGARGIGTAIVMSSGFGETGAPGVVRQRELLAQARRLGVRLIGPNAQGVANFHTGAVMNFSTMFMEVPPQDGPVAIVSQSGAASVMPYAMLRERGVGVRYLVASGNDADASVNELALAAAADPHIRVVLMYIEALADPAVLAEVAHTARARG 243
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BLAST of mRNA_P-wetherbeei_contig53432.1.1 vs. uniprot
Match: I3UAX4_ADVKW (CoA-binding domain-containing protein n=5 Tax=Advenella TaxID=290425 RepID=I3UAX4_ADVKW)

HSP 1 Score: 267 bits (682), Expect = 1.160e-82
Identity = 133/179 (74.30%), Postives = 157/179 (87.71%), Query Frame = 1 
Query:    1 SLADVPETPDVVVLAVGQEQVPEMVRQCATRGVGTAVVMSSGFGETGAEGVERQRVLVEQARHLGVRLVGPNAQGIANFRTGAVLNFSTMFMEIAPKDGPVAIISQSGAASVMPYAMLRERDIGVRYLVASGNDADASVSELALVAAADPEIRVVLLYIESLSDPETLAEVARLACARG 537
            SLA++PETPDV ++AVGQ+ V +++ QCAT+ +   ++MSSGFGETG+ GV+RQ  LV+QAR LG+RLVGPNAQG+ANF TGAV+NFSTMFMEI P+DGPVAIISQSGAASVMPYAMLRER +GVRYL+ASGNDADASV ELAL AA DPEIRV+LLYIESL+DP  LAE ARLA +RG
Sbjct:   65 SLAELPETPDVAIVAVGQDAVADVIEQCATQAIACVILMSSGFGETGSAGVQRQTALVQQARRLGLRLVGPNAQGVANFHTGAVMNFSTMFMEIEPEDGPVAIISQSGAASVMPYAMLRERGVGVRYLIASGNDADASVCELALAAAVDPEIRVILLYIESLADPAMLAETARLAISRG 243
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53432.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000E0D2D1B4.700e-9889.94acetate--CoA ligase family protein n=1 Tax=Rhodofe... [more]
UPI00049143642.140e-9285.47acetate--CoA ligase family protein n=1 Tax=Azohydr... [more]
A0A520GB17_9BURK3.810e-8577.65CoA-binding protein n=1 Tax=Variovorax sp. TaxID=1... [more]
UPI001F399C7D1.180e-8479.33acetate--CoA ligase family protein n=1 Tax=Caenimo... [more]
T1XI84_VARPD1.490e-8477.09Putative acyl-CoA ligase n=2 Tax=Variovorax parado... [more]
A0A1H7EBA5_9BURK5.810e-8478.21Acyl-CoA synthetase (NDP forming) n=2 Tax=unclassi... [more]
A0A2W5RVM9_VARPD8.140e-8475.42CoA-binding protein n=1 Tax=Variovorax paradoxus T... [more]
UPI00164DC65C4.030e-8378.21Acetate--CoA ligase family protein n=2 Tax=Ramliba... [more]
UPI0008246DAD4.460e-8375.42acetate--CoA ligase family protein n=1 Tax=Xylophi... [more]
I3UAX4_ADVKW1.160e-8274.30CoA-binding domain-containing protein n=5 Tax=Adve... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53432contigP-wetherbeei_contig53432:2..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1424334.W822_14615
PFAMsATP-grasp_5,CoA_binding_2,Succ_CoA_lig
Model size537
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.11e-81
EggNOG OGsCOG1042@1|root,COG1042@2|Bacteria,1MW98@1224|Proteobacteria,2VNBU@28216|Betaproteobacteria,3T5EZ@506|Alcaligenaceae
DescriptionCoA binding domain
Cds size537
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186799.158984-CDS-P-wetherbeei_contig53432:1..5381683186799.158984-CDS-P-wetherbeei_contig53432:1..538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53432 2..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53432.1.1prot_P-wetherbeei_contig53432.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53432 2..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53432.1.1

>prot_P-wetherbeei_contig53432.1.1 ID=prot_P-wetherbeei_contig53432.1.1|Name=mRNA_P-wetherbeei_contig53432.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
SLADVPETPDVVVLAVGQEQVPEMVRQCATRGVGTAVVMSSGFGETGAEG
VERQRVLVEQARHLGVRLVGPNAQGIANFRTGAVLNFSTMFMEIAPKDGP
VAIISQSGAASVMPYAMLRERDIGVRYLVASGNDADASVSELALVAAADP
EIRVVLLYIESLSDPETLAEVARLACARG
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mRNA from alignment at P-wetherbeei_contig53432:2..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53432.1.1 ID=mRNA_P-wetherbeei_contig53432.1.1|Name=mRNA_P-wetherbeei_contig53432.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig53432:2..538+ (Phaeothamnion wetherbeei SAG_119_79)
TCGCTGGCTGATGTGCCGGAGACCCCCGATGTGGTGGTCCTTGCCGTGGG
CCAAGAACAGGTCCCGGAAATGGTTCGTCAGTGCGCAACGCGTGGCGTGG
GTACGGCTGTGGTCATGAGCTCAGGGTTTGGCGAGACCGGCGCCGAGGGT
GTCGAACGCCAGCGCGTCCTGGTCGAGCAGGCCCGCCATTTGGGTGTGCG
CCTGGTAGGGCCCAACGCGCAGGGCATCGCCAACTTCCGCACGGGGGCGG
TACTGAATTTCAGCACCATGTTCATGGAGATCGCGCCAAAGGACGGGCCG
GTTGCCATCATCAGCCAAAGTGGCGCGGCAAGCGTGATGCCCTATGCCAT
GCTCAGGGAGCGTGACATAGGGGTGCGCTATCTGGTCGCTTCAGGCAACG
ATGCCGATGCTTCCGTGTCCGAATTGGCGCTGGTTGCGGCAGCCGATCCT
GAGATACGTGTCGTTTTGCTTTACATCGAGTCGCTCAGCGACCCCGAGAC
GCTCGCCGAAGTGGCGCGCCTTGCGTGTGCCCGTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53432:2..538+

>mRNA_P-wetherbeei_contig53432.1.1 ID=mRNA_P-wetherbeei_contig53432.1.1|Name=mRNA_P-wetherbeei_contig53432.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig53432:2..538+ (Phaeothamnion wetherbeei SAG_119_79)
TCGCTGGCTGATGTGCCGGAGACCCCCGATGTGGTGGTCCTTGCCGTGGG
CCAAGAACAGGTCCCGGAAATGGTTCGTCAGTGCGCAACGCGTGGCGTGG
GTACGGCTGTGGTCATGAGCTCAGGGTTTGGCGAGACCGGCGCCGAGGGT
GTCGAACGCCAGCGCGTCCTGGTCGAGCAGGCCCGCCATTTGGGTGTGCG
CCTGGTAGGGCCCAACGCGCAGGGCATCGCCAACTTCCGCACGGGGGCGG
TACTGAATTTCAGCACCATGTTCATGGAGATCGCGCCAAAGGACGGGCCG
GTTGCCATCATCAGCCAAAGTGGCGCGGCAAGCGTGATGCCCTATGCCAT
GCTCAGGGAGCGTGACATAGGGGTGCGCTATCTGGTCGCTTCAGGCAACG
ATGCCGATGCTTCCGTGTCCGAATTGGCGCTGGTTGCGGCAGCCGATCCT
GAGATACGTGTCGTTTTGCTTTACATCGAGTCGCTCAGCGACCCCGAGAC
GCTCGCCGAAGTGGCGCGCCTTGCGTGTGCCCGTGGC
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