mRNA_P-wetherbeei_contig534.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig534.5.1
Unique NamemRNA_P-wetherbeei_contig534.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig534.5.1 vs. uniprot
Match: D7FH12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH12_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 3.890e-33
Identity = 108/261 (41.38%), Postives = 132/261 (50.57%), Query Frame = 1 
Query:  103 SSNFVDRLLAVVTAAGGPLRPHALLLLARVGSLYPRHLA----ARQAAAE-----------AALLRCLGDADQNVRLHAIKVAEETLRGRAKAAAAXXXXXXXVPSAALAAEPTAVE-ANGLAFAGGCASGSDSAASAEDMEA-----------------------GAAWAVFLRRNLQRAFDDPYPGVRAVACACHSHLLSSDWATFPNDERQGCLSRILAATADAAPGVAALACRVVGDLL---GLEPTPLWCQDRRFL 759
            S +FVDRL+A+   A G LR  AL LL R+G  YP HL+    AR   AE           A LLRC  D DQN+RLHA+KV E  L  RA+ AAA           A  A P A E ++G A     A+ S S       E                        G  W   ++++LQRA +DPY GVRAVAC+CH+ LL SDW  F + ER+ CL R+LAAT D A GV  LACRVV  ++   G E    WC+D  FL
Sbjct:  769 SDSFVDRLIALA-GAPGQLRAEALGLLTRIGRSYPAHLSGGCTARGTVAEKTTATTWERVSALLLRCFADPDQNLRLHALKVLEALLLARAEQAAA-----------AAEALPVAGEKSSGTAGXXXXAAESVSPKQKPRSETXXXXXXXXXXXXXXXXXXXXXXGGKVWRDLVQKHLQRALEDPYHGVRAVACSCHASLLKSDWEAFSDRERERCLGRVLAATRDRAAGVNILACRVVAGVMTMAGQEGAAAWCRDPEFL 1017
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BLAST of mRNA_P-wetherbeei_contig534.5.1 vs. uniprot
Match: A0A6H5K415_9PHAE (DUF4042 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K415_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.320e-20
Identity = 59/142 (41.55%), Postives = 79/142 (55.63%), Query Frame = 1 
Query:  493 WAVFLRRNLQRAFDDPYPGVRAVACACHSHLLSSDWATFPNDERQGCLSRILAATADAAPGVAALACRVVGDLL---GLEPTPLWCQDRRFLAAVVPALLSAGGGASTTAGDSGGSKLAPIR--AQALWAIGNLASMLHALR 903
            W   ++++LQRA +DPY GVRAVAC+CH+ LL SDW  F + ER  CL R+LAAT D A GV  LACRVV  ++   G E    WC+D  FL                   D   ++L  +    +A+ A+GNL+  LH +R
Sbjct: 1006 WRDLVQKHLQRALEDPYHGVRAVACSCHASLLKSDWEAFSDPERDRCLGRVLAATRDRAAGVNILACRVVAGVMTMAGEEGAAAWCRDPEFL-------------------DRCAARLQEMMEDTKAMLAVGNLSCSLHGIR 1128
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BLAST of mRNA_P-wetherbeei_contig534.5.1 vs. uniprot
Match: A0A5D6Y034_9STRA (DUF4042 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y034_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.160e-5
Identity = 79/278 (28.42%), Postives = 116/278 (41.73%), Query Frame = 1 
Query:  109 NFVDRLLAVVTAAGGP----LRPHALLLLARVGSLYPRHLAARQAAAEAALLRCLGDADQNVRLHAIKVAEETLRGRAKAAAAXXXXXXXVPSAALAAEPTAVEANGLAFAGGCASGSDSAASAEDMEAGAAWAV--FLRRNLQRAFDDPYPGVRAVACACHSHLLSSDWATFPNDE-RQGCLSR--------------ILAATADAAPGVAALACRVVGDLLGLEPTPLWCQDRRFLAAVVPALLSAGGGASTTAGDSGGSKLAPIRAQALWAIGNL 879
            +FV+ LL + +         LR  A+ LL+++   Y   L+A        +L    DAD NVRL A+K+ E  ++G +    A       V S  LA+ P    A     + G  S S    +A+ + A +      FL  +L RAF D    VRA  CAC + L  +DWA     + R   L+R               L    D++P V A   R++G L  L P     + R F +AVV   L           +S G     +R +  WA+GN+
Sbjct:  527 SFVEELLLIASRPDDSSRTLLRLEAMSLLSKIAKNYSSALSANWRRLADFMLSAFQDADPNVRLQAVKILENYIKGES----ASRVEGLPVSSGGLASSPGESVAVSPGTSPGRVSTSRWLYNAQHVSALSRKECLDFLATHLIRAFRDTSHHVRASVCACFTLLRPNDWAQLREKQSRLPALARAGVTNHSLDMYTSIFLQTPKDSSPVVRAAGFRLLGSLC-LAPV---FKTREFASAVVSLAL-----------ESLGDSTLNVRVRGAWALGNV 785
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig534.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FH12_ECTSI3.890e-3341.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K415_9PHAE1.320e-2041.55DUF4042 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A5D6Y034_9STRA4.160e-528.42DUF4042 domain-containing protein n=1 Tax=Pythium ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig534contigP-wetherbeei_contig534:8794..9705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size912
Hectar predicted targeting categoryother localisation
Exons1
Cds size912
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186798.8598385-CDS-P-wetherbeei_contig534:8793..97051683186798.8598385-CDS-P-wetherbeei_contig534:8793..9705Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig534 8794..9705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig534.5.1prot_P-wetherbeei_contig534.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig534 8794..9705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig534.5.1

>prot_P-wetherbeei_contig534.5.1 ID=prot_P-wetherbeei_contig534.5.1|Name=mRNA_P-wetherbeei_contig534.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=304bp
PLAGPTGPAAANGLAAIDLPAAANGLAANGAAAASSNFVDRLLAVVTAAG
GPLRPHALLLLARVGSLYPRHLAARQAAAEAALLRCLGDADQNVRLHAIK
VAEETLRGRAKAAAAAAAVAAAVPSAALAAEPTAVEANGLAFAGGCASGS
DSAASAEDMEAGAAWAVFLRRNLQRAFDDPYPGVRAVACACHSHLLSSDW
ATFPNDERQGCLSRILAATADAAPGVAALACRVVGDLLGLEPTPLWCQDR
RFLAAVVPALLSAGGGASTTAGDSGGSKLAPIRAQALWAIGNLASMLHAL
RLLR
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mRNA from alignment at P-wetherbeei_contig534:8794..9705+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig534.5.1 ID=mRNA_P-wetherbeei_contig534.5.1|Name=mRNA_P-wetherbeei_contig534.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=912bp|location=Sequence derived from alignment at P-wetherbeei_contig534:8794..9705+ (Phaeothamnion wetherbeei SAG_119_79)
CCCTTGGCGGGCCCCACCGGGCCGGCGGCGGCCAACGGTCTGGCAGCGAT
CGATCTGCCGGCGGCGGCCAACGGTCTGGCTGCGAACGGGGCGGCGGCCG
CCAGCTCCAACTTTGTGGACCGCCTGCTGGCGGTGGTGACAGCGGCCGGC
GGACCGTTGCGCCCCCATGCGCTGCTGCTGCTCGCTCGCGTCGGCAGCCT
GTACCCGCGGCACCTGGCTGCACGGCAAGCGGCCGCCGAGGCGGCGCTGC
TGCGGTGTCTTGGGGATGCAGACCAGAACGTGCGGCTGCATGCCATCAAA
GTGGCGGAAGAGACGCTGCGTGGGCGAGCCAAGGCCGCCGCGGCGGCTGC
GGCGGTCGCGGCGGCGGTGCCTTCAGCAGCACTTGCGGCGGAGCCGACTG
CAGTCGAGGCGAACGGTCTTGCCTTTGCGGGAGGCTGTGCCTCTGGGAGT
GACAGTGCCGCGTCCGCGGAGGACATGGAGGCAGGCGCAGCGTGGGCCGT
CTTCCTGCGGCGCAACCTGCAGCGCGCCTTCGACGATCCCTATCCCGGCG
TGCGTGCAGTGGCGTGCGCCTGCCACAGCCACTTGCTGTCTTCGGATTGG
GCAACCTTTCCGAACGACGAACGCCAAGGCTGCCTGAGCCGTATCCTGGC
CGCGACGGCAGACGCGGCGCCGGGCGTGGCCGCCTTGGCGTGCCGTGTTG
TCGGCGACCTGTTGGGCCTCGAGCCGACGCCGCTGTGGTGCCAGGACCGC
CGCTTCTTGGCGGCGGTCGTGCCGGCGCTGCTCAGCGCAGGCGGCGGCGC
CAGCACGACCGCCGGCGACAGCGGCGGCAGCAAATTGGCGCCGATCCGTG
CCCAGGCGCTCTGGGCCATTGGGAACTTGGCGAGCATGCTGCACGCCCTA
CGGCTGTTGCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig534:8794..9705+

>mRNA_P-wetherbeei_contig534.5.1 ID=mRNA_P-wetherbeei_contig534.5.1|Name=mRNA_P-wetherbeei_contig534.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=912bp|location=Sequence derived from alignment at P-wetherbeei_contig534:8794..9705+ (Phaeothamnion wetherbeei SAG_119_79)
CCCTTGGCGGGCCCCACCGGGCCGGCGGCGGCCAACGGTCTGGCAGCGAT
CGATCTGCCGGCGGCGGCCAACGGTCTGGCTGCGAACGGGGCGGCGGCCG
CCAGCTCCAACTTTGTGGACCGCCTGCTGGCGGTGGTGACAGCGGCCGGC
GGACCGTTGCGCCCCCATGCGCTGCTGCTGCTCGCTCGCGTCGGCAGCCT
GTACCCGCGGCACCTGGCTGCACGGCAAGCGGCCGCCGAGGCGGCGCTGC
TGCGGTGTCTTGGGGATGCAGACCAGAACGTGCGGCTGCATGCCATCAAA
GTGGCGGAAGAGACGCTGCGTGGGCGAGCCAAGGCCGCCGCGGCGGCTGC
GGCGGTCGCGGCGGCGGTGCCTTCAGCAGCACTTGCGGCGGAGCCGACTG
CAGTCGAGGCGAACGGTCTTGCCTTTGCGGGAGGCTGTGCCTCTGGGAGT
GACAGTGCCGCGTCCGCGGAGGACATGGAGGCAGGCGCAGCGTGGGCCGT
CTTCCTGCGGCGCAACCTGCAGCGCGCCTTCGACGATCCCTATCCCGGCG
TGCGTGCAGTGGCGTGCGCCTGCCACAGCCACTTGCTGTCTTCGGATTGG
GCAACCTTTCCGAACGACGAACGCCAAGGCTGCCTGAGCCGTATCCTGGC
CGCGACGGCAGACGCGGCGCCGGGCGTGGCCGCCTTGGCGTGCCGTGTTG
TCGGCGACCTGTTGGGCCTCGAGCCGACGCCGCTGTGGTGCCAGGACCGC
CGCTTCTTGGCGGCGGTCGTGCCGGCGCTGCTCAGCGCAGGCGGCGGCGC
CAGCACGACCGCCGGCGACAGCGGCGGCAGCAAATTGGCGCCGATCCGTG
CCCAGGCGCTCTGGGCCATTGGGAACTTGGCGAGCATGCTGCACGCCCTA
CGGCTGTTGCGA
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