mRNA_P-wetherbeei_contig53392.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53392.1.1
Unique NamemRNA_P-wetherbeei_contig53392.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53392.1.1 vs. uniprot
Match: A0A7C9GG52_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C9GG52_9PROT)

HSP 1 Score: 90.5 bits (223), Expect = 1.070e-19
Identity = 43/65 (66.15%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 PVRYMTMFHMTNDSHLFFTKTQLEQS-AYPISGGRWRKGSEEFVPLLVGKSVKQFDHRAASVLVD 192
            PVRY TMFHMTNDSHLF T+  LE   AY ++G RWR+G EEF+PL  GK V+ +DHRAASV VD
Sbjct:  317 PVRYFTMFHMTNDSHLFQTRAALEAGGAYRVAGNRWRRGEEEFLPLYEGKMVQAYDHRAASVEVD 381          
BLAST of mRNA_P-wetherbeei_contig53392.1.1 vs. uniprot
Match: A0A7C6W297_9GAMM (Restriction endonuclease n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A7C6W297_9GAMM)

HSP 1 Score: 88.6 bits (218), Expect = 5.090e-19
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 PVRYMTMFHMTNDSHLFFTKTQLEQSA-YPISGGRWRKGSEEFVPLLVGKSVKQFDHRAASVLVD 192
            PVRY TMFHMTNDSHLF  + +LE +  YP+ G RWRKG +E+VPL VG+ + Q+DHRAA V V+
Sbjct:  389 PVRYTTMFHMTNDSHLFKRRDELEAAGFYPVGGHRWRKGKDEYVPLYVGRMIHQYDHRAAGVEVN 453          
BLAST of mRNA_P-wetherbeei_contig53392.1.1 vs. uniprot
Match: A0A6S6G178_9SPHN (Restriction endonuclease n=1 Tax=Sphingomonas sp. HMP6 TaxID=1517551 RepID=A0A6S6G178_9SPHN)

HSP 1 Score: 85.5 bits (210), Expect = 6.210e-18
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 PVRYMTMFHMTNDSHLFFTKTQLEQS--AYPISGGRWRKGSEEFVPLLVGKSVKQFDHRAASVLVD 192
            PV Y TMFHMTNDSHLF TK +LE+   A+PI G RW+    E+VPL VG+ + QFDHRAASV V+
Sbjct: 1045 PVMYATMFHMTNDSHLFRTKLELEEQEGAWPIGGNRWQSKDGEWVPLYVGRMIHQFDHRAASVTVN 1110          
BLAST of mRNA_P-wetherbeei_contig53392.1.1 vs. uniprot
Match: UPI00145D86A7 (restriction endonuclease n=1 Tax=Candidatus Competibacter phosphatis TaxID=221280 RepID=UPI00145D86A7)

HSP 1 Score: 84.0 bits (206), Expect = 2.160e-17
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 PVRYMTMFHMTNDSHLFFTKTQLEQSA-YPISGGRWRKGSEEFVPLLVGKSVKQFDHRAASVLVD 192
            PVRY TMFHMTNDSHLF  + +L+ +  YP+ G RW  G E++VPL VG+ + Q+DHRAA V V+
Sbjct: 1048 PVRYATMFHMTNDSHLFKRRDELDAAGFYPVKGNRWSNGQEDYVPLYVGRMIHQYDHRAAGVEVN 1112          
BLAST of mRNA_P-wetherbeei_contig53392.1.1 vs. uniprot
Match: A0A7C1W2U6_9GAMM (Restriction endonuclease n=1 Tax=Thioploca sp. TaxID=2268140 RepID=A0A7C1W2U6_9GAMM)

HSP 1 Score: 84.0 bits (206), Expect = 2.160e-17
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 PVRYMTMFHMTNDSHLFFTKTQLEQSA-YPISGGRWRKGSEEFVPLLVGKSVKQFDHRAASVLVD 192
            PVRY TMFHMTNDSHLF  + +LE    YP+    WR+GSEEFVPL  GK V+ +DHRAAS+ V+
Sbjct: 1048 PVRYTTMFHMTNDSHLFKRQQELEADGFYPVGKHIWRRGSEEFVPLYEGKMVQAYDHRAASITVN 1112          
BLAST of mRNA_P-wetherbeei_contig53392.1.1 vs. uniprot
Match: A0A6N3X4F3_9SYNE (Restriction endonuclease (Fragment) n=1 Tax=Candidatus Synechococcus spongiarum 142 TaxID=1608213 RepID=A0A6N3X4F3_9SYNE)

HSP 1 Score: 83.6 bits (205), Expect = 2.920e-17
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 PVRYMTMFHMTNDSHLFFTKTQLEQS--AYPISGGRWRKGSEEFVPLLVGKSVKQFDHRAASVLVD 192
            PV+Y TMFHMTNDSHLF TK +LE+   A+P+ G RW     E+VPL  GK V+ FDHRAASV+V+
Sbjct:  320 PVKYSTMFHMTNDSHLFRTKEELEEQEGAFPLGGNRWDSPKGEWVPLYEGKMVQAFDHRAASVVVN 385          
BLAST of mRNA_P-wetherbeei_contig53392.1.1 vs. uniprot
Match: UPI001AEFAA62 (hypothetical protein n=1 Tax=Caulobacter sp. FWC26 TaxID=69665 RepID=UPI001AEFAA62)

HSP 1 Score: 83.2 bits (204), Expect = 3.890e-17
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 PVRYMTMFHMTNDSHLFFTKTQLEQ--SAYPISGGRWRKGSEEFVPLLVGKSVKQFDHRAASVLVD 192
            PVRY TMFHMTNDSHLF T+ +LE+   A+PI G R+R  S +++PL  G+ + QFDHRAASV V+
Sbjct:  198 PVRYATMFHMTNDSHLFRTRAELEEREGAWPIGGNRFRSASGDWLPLYAGRMIHQFDHRAASVTVN 263          
BLAST of mRNA_P-wetherbeei_contig53392.1.1 vs. uniprot
Match: UPI0019D6A4C1 (hypothetical protein n=1 Tax=Sphingomonas oligophenolica TaxID=301154 RepID=UPI0019D6A4C1)

HSP 1 Score: 83.2 bits (204), Expect = 3.950e-17
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 PVRYMTMFHMTNDSHLFFTKTQLEQS--AYPISGGRWRKGSEEFVPLLVGKSVKQFDHRAASVLVD 192
            PV+Y TMFHMTNDSHLF TK +LE++  A+PI G RW+  + E+V L  GK V+ FDHRAASV+V+
Sbjct:  234 PVKYATMFHMTNDSHLFRTKVELEEAEGAWPIGGNRWQSKAGEWVQLYEGKMVQAFDHRAASVVVN 299          
BLAST of mRNA_P-wetherbeei_contig53392.1.1 vs. uniprot
Match: UPI001C4DF3DF (hypothetical protein n=1 Tax=Sphingopyxis sp. KK2 TaxID=1855727 RepID=UPI001C4DF3DF)

HSP 1 Score: 81.6 bits (200), Expect = 1.400e-16
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 PVRYMTMFHMTNDSHLFFTKTQLEQS--AYPISGGRWRKGSEEFVPLLVGKSVKQFDHRAASVLVD 192
            P++Y TMFHMTNDSHLF T+ +LE S  A+P  G  W+  +EE+VPL  GK V+ FDHRAASV+++
Sbjct: 1063 PIKYATMFHMTNDSHLFRTRAELEGSEGAWPTGGNCWQSATEEWVPLYEGKMVQAFDHRAASVVLN 1128          
BLAST of mRNA_P-wetherbeei_contig53392.1.1 vs. uniprot
Match: A0A6B1FBH4_9SYNE (N-6 DNA methylase (Fragment) n=1 Tax=Synechococcus sp. SB0676_bin_10 TaxID=2604869 RepID=A0A6B1FBH4_9SYNE)

HSP 1 Score: 81.3 bits (199), Expect = 1.910e-16
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    1 PVRYMTMFHMTNDSHLFFTKTQLEQ--SAYPISGGRWRKGSEEFVPLLVGKSVKQFDHRAASVLVD 192
            PV+Y TMFHMTNDSHLF TK +LE+   A+P+ G RW      +VPL  GK V+ FDHRAASV+V+
Sbjct:  664 PVKYSTMFHMTNDSHLFRTKEELEEREGAFPVGGNRWDSPKGVWVPLYEGKMVQAFDHRAASVVVN 729          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53392.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C9GG52_9PROT1.070e-1966.15Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A7C6W297_9GAMM5.090e-1961.54Restriction endonuclease n=1 Tax=Xanthomonadaceae ... [more]
A0A6S6G178_9SPHN6.210e-1862.12Restriction endonuclease n=1 Tax=Sphingomonas sp. ... [more]
UPI00145D86A72.160e-1756.92restriction endonuclease n=1 Tax=Candidatus Compet... [more]
A0A7C1W2U6_9GAMM2.160e-1761.54Restriction endonuclease n=1 Tax=Thioploca sp. Tax... [more]
A0A6N3X4F3_9SYNE2.920e-1760.61Restriction endonuclease (Fragment) n=1 Tax=Candid... [more]
UPI001AEFAA623.890e-1759.09hypothetical protein n=1 Tax=Caulobacter sp. FWC26... [more]
UPI0019D6A4C13.950e-1760.61hypothetical protein n=1 Tax=Sphingomonas oligophe... [more]
UPI001C4DF3DF1.400e-1657.58hypothetical protein n=1 Tax=Sphingopyxis sp. KK2 ... [more]
A0A6B1FBH4_9SYNE1.910e-1659.09N-6 DNA methylase (Fragment) n=1 Tax=Synechococcus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53392contigP-wetherbeei_contig53392:307..498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1479239.JQMU01000001_gene890
PFAMsN6_Mtase
Model size192
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.34e-11
EggNOG OGsCOG1002@1|root,COG2810@1|root,COG1002@2|Bacteria,COG2810@2|Bacteria,1NM9N@1224|Proteobacteria,2TSRS@28211|Alphaproteobacteria,2K3QM@204457|Sphingomonadales
DescriptionCOG1002 Type II restriction enzyme, methylase subunits
Cds size180
COG categoryV
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186798.6331508-UTR-P-wetherbeei_contig53392:306..3181683186798.6331508-UTR-P-wetherbeei_contig53392:306..318Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53392 307..318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186798.6418438-CDS-P-wetherbeei_contig53392:318..4981683186798.6418438-CDS-P-wetherbeei_contig53392:318..498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53392 319..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53392.1.1prot_P-wetherbeei_contig53392.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53392 319..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53392.1.1

>prot_P-wetherbeei_contig53392.1.1 ID=prot_P-wetherbeei_contig53392.1.1|Name=mRNA_P-wetherbeei_contig53392.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=60bp
MTMFHMTNDSHLFFTKTQLEQSAYPISGGRWRKGSEEFVPLLVGKSVKQF
DHRAASVLVD
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mRNA from alignment at P-wetherbeei_contig53392:307..498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53392.1.1 ID=mRNA_P-wetherbeei_contig53392.1.1|Name=mRNA_P-wetherbeei_contig53392.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig53392:307..498+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGTGCGCTATATGACTATGTTCCATATGACAAACGATAGCCATTTGTT CTTCACCAAGACACAGCTAGAGCAATCCGCGTATCCAATCAGTGGTGGAC GTTGGCGCAAAGGCAGTGAAGAGTTTGTGCCATTGTTGGTTGGAAAGAGC GTGAAGCAATTTGATCACCGCGCTGCTTCTGTCTTGGTAGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53392:307..498+

>mRNA_P-wetherbeei_contig53392.1.1 ID=mRNA_P-wetherbeei_contig53392.1.1|Name=mRNA_P-wetherbeei_contig53392.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig53392:307..498+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTATGTTCCATATGACAAACGATAGCCATTTGTTCTTCACCAAGAC
ACAGCTAGAGCAATCCGCGTATCCAATCAGTGGTGGACGTTGGCGCAAAG
GCAGTGAAGAGTTTGTGCCATTGTTGGTTGGAAAGAGCGTGAAGCAATTT
GATCACCGCGCTGCTTCTGTCTTGGTAGAT
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