mRNA_P-wetherbeei_contig53341.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53341.1.1
Unique NamemRNA_P-wetherbeei_contig53341.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig53341.1.1 vs. uniprot
Match: UPI001C3CACBB (hypothetical protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3CACBB)

HSP 1 Score: 144 bits (362), Expect = 1.250e-39
Identity = 70/94 (74.47%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:    1 WWRVP-VAAWLGSRLIILAAALVAGQAFGVPTRGVDPAVPSSLVQLGGWDTTWYLDIARNGYEHDVGQVGHVFTNLAFFPLMPGVMALFLVVGL 279
            WWR P VAAW  SR ++L   +V   AFGVPTRGVDPAVP  L QLGGWDTTWYLDIARNGY  D+GQVG VFTNLAFFPL+PGVMA FL VGL
Sbjct:   12 WWRTPPVAAWATSRALVLVVGVVCSLAFGVPTRGVDPAVPGWLDQLGGWDTTWYLDIARNGYAEDMGQVGEVFTNLAFFPLLPGVMAAFLAVGL 105
[Close]
BLAST of mRNA_P-wetherbeei_contig53341.1.1 vs. uniprot
Match: UPI001C3E5E2F (hypothetical protein n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3E5E2F)

HSP 1 Score: 128 bits (322), Expect = 7.670e-34
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:   22 AWLGSRLIILAAALVAGQAFGVPTRGVDPAVPSSLVQLGGWDTTWYLDIARNGYEHDVGQVGHVFTNLAFFPLMPGVMALFLVVGL 279
            AW  SR ++L A LV    FG+P RGVD AVP +L  LGGWDTTWYLDIAR+GYEHD+GQVG VFTNLAFFPL+PG+MA FL VG+
Sbjct:    6 AWAASRALVLVAGLVMSLVFGLPERGVDAAVPDALALLGGWDTTWYLDIARHGYEHDLGQVGLVFTNLAFFPLVPGIMAAFLTVGI 91
[Close]
BLAST of mRNA_P-wetherbeei_contig53341.1.1 vs. uniprot
Match: UPI0019993EB5 (Membrane protein n=3 Tax=Streptomyces TaxID=1883 RepID=UPI0019993EB5)

HSP 1 Score: 55.5 bits (132), Expect = 6.910e-7
Identity = 36/92 (39.13%), Postives = 47/92 (51.09%), Query Frame = 1 
Query:    1 WWRVP-----VAAWLGSRLIILAAALVAGQAFGVPTRGVDPAVPSSLVQLG----GWDTTWYLDIARNGYEHDVGQVGHVFTNLAFFPLMPG 249
            W R+P     V  +L +RLI +AA  VA             AV +    LG     WD+ WYL +A +GY H   + GHV ++LAFFPL PG
Sbjct:   37 WHRLPDPATAVGLFLAARLIGVAAVTVA-------------AVAAHKRPLGLLSRSWDSVWYLGLAHHGYGHTYYRFGHVLSDLAFFPLYPG 115
[Close]
BLAST of mRNA_P-wetherbeei_contig53341.1.1 vs. uniprot
Match: A0A1Z4IS88_9CYAN (Uncharacterized protein n=3 Tax=Nostocales TaxID=1161 RepID=A0A1Z4IS88_9CYAN)

HSP 1 Score: 51.2 bits (121), Expect = 2.160e-5
Identity = 34/89 (38.20%), Postives = 45/89 (50.56%), Query Frame = 1 
Query:   13 PVAAWLGSRLIILAAALVAGQAFGVPTRGVDPAVPSSLVQLGGWDTTWYLDIARNGYEHDVGQVGHVFTNLAFFPLMPGVMALFLVVGL 279
            P   WL SRL+I AA L+     G P  G+ P     +     WD+  Y  IA +GYE       H   NLAFFPL P ++ +F+ +GL
Sbjct:   20 PAVIWLVSRLLIWAAMLLVDPHLGPPPEGITPEFGWGVFDA--WDSVHYRAIATSGYEFVDDGKQH---NLAFFPLFPLLIWVFMKLGL 103
[Close]
BLAST of mRNA_P-wetherbeei_contig53341.1.1 vs. uniprot
Match: UPI0019C87B41 (Membrane protein n=2 Tax=Streptomyces minutiscleroticus TaxID=68238 RepID=UPI0019C87B41)

HSP 1 Score: 50.4 bits (119), Expect = 3.990e-5
Identity = 31/81 (38.27%), Postives = 42/81 (51.85%), Query Frame = 1 
Query:    7 RVPVAAWLGSRLIILAAALVAGQAFGVPTRGVDPAVPSSLVQLGGWDTTWYLDIARNGYEHDVGQVGHVFTNLAFFPLMPG 249
            R+P A+ L   L + AA  + G A    T       P +L+  G WD+ WY+ IA +GY   V      F++LAFFPL PG
Sbjct:   26 RLPAASGLVHALGLFAAVRLLGVAAVALTAWSSGGRPLALLG-GSWDSVWYVGIAADGYGRTVPMPPRSFSDLAFFPLYPG 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53341.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001C3CACBB1.250e-3974.47hypothetical protein n=1 Tax=Miltoncostaea oceani ... [more]
UPI001C3E5E2F7.670e-3469.77hypothetical protein n=1 Tax=Miltoncostaea marina ... [more]
UPI0019993EB56.910e-739.13Membrane protein n=3 Tax=Streptomyces TaxID=1883 R... [more]
A0A1Z4IS88_9CYAN2.160e-538.20Uncharacterized protein n=3 Tax=Nostocales TaxID=1... [more]
UPI0019C87B413.990e-538.27Membrane protein n=2 Tax=Streptomyces minutisclero... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53341contigP-wetherbeei_contig53341:7..285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog211165.AJLN01000085_gene1631
PFAMsMannosyl_trans2
Model size279
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.43e-07
EggNOG OGsCOG5542@1|root,COG5542@2|Bacteria,1G3SR@1117|Cyanobacteria,1JH9N@1189|Stigonemataceae
DescriptionMannosyltransferase (PIG-V)
Cds size279
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186798.4039893-CDS-P-wetherbeei_contig53341:6..2851683186798.4039893-CDS-P-wetherbeei_contig53341:6..285Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53341 7..285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53341.1.1prot_P-wetherbeei_contig53341.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53341 7..285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53341.1.1

>prot_P-wetherbeei_contig53341.1.1 ID=prot_P-wetherbeei_contig53341.1.1|Name=mRNA_P-wetherbeei_contig53341.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
WWRVPVAAWLGSRLIILAAALVAGQAFGVPTRGVDPAVPSSLVQLGGWDT
TWYLDIARNGYEHDVGQVGHVFTNLAFFPLMPGVMALFLVVGL
back to top

mRNA from alignment at P-wetherbeei_contig53341:7..285-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53341.1.1 ID=mRNA_P-wetherbeei_contig53341.1.1|Name=mRNA_P-wetherbeei_contig53341.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig53341:7..285- (Phaeothamnion wetherbeei SAG_119_79)
TGGTGGCGGGTTCCCGTCGCCGCGTGGCTCGGCTCGCGGCTCATCATCCT
CGCGGCGGCGCTCGTGGCCGGGCAGGCGTTCGGGGTGCCCACGCGCGGCG
TCGATCCCGCCGTGCCCTCGTCGCTGGTGCAGCTCGGCGGCTGGGATACC
ACCTGGTACCTCGACATCGCGCGAAACGGCTACGAGCACGACGTCGGGCA
GGTGGGGCACGTGTTCACCAACCTGGCCTTCTTCCCGCTCATGCCCGGGG
TGATGGCGCTCTTCCTCGTGGTGGGTCTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig53341:7..285-

>mRNA_P-wetherbeei_contig53341.1.1 ID=mRNA_P-wetherbeei_contig53341.1.1|Name=mRNA_P-wetherbeei_contig53341.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig53341:7..285- (Phaeothamnion wetherbeei SAG_119_79)
TGGTGGCGGGTTCCCGTCGCCGCGTGGCTCGGCTCGCGGCTCATCATCCT
CGCGGCGGCGCTCGTGGCCGGGCAGGCGTTCGGGGTGCCCACGCGCGGCG
TCGATCCCGCCGTGCCCTCGTCGCTGGTGCAGCTCGGCGGCTGGGATACC
ACCTGGTACCTCGACATCGCGCGAAACGGCTACGAGCACGACGTCGGGCA
GGTGGGGCACGTGTTCACCAACCTGGCCTTCTTCCCGCTCATGCCCGGGG
TGATGGCGCTCTTCCTCGTGGTGGGTCTC
back to top