mRNA_P-wetherbeei_contig53320.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53320.1.1
Unique NamemRNA_P-wetherbeei_contig53320.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53320.1.1 vs. uniprot
Match: A0A2N2TA32_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-16 TaxID=2013707 RepID=A0A2N2TA32_9PROT)

HSP 1 Score: 224 bits (570), Expect = 4.100e-71
Identity = 119/134 (88.81%), Postives = 128/134 (95.52%), Query Frame = 1
Query:   82 MSARVVLVDRPAPHVARLLINRPDKRNAIDYDVRQQLTDALGTLLGDATVRAIVFGGAQGVFSAGGDVPSMVGLSEAQARERMQHIHVLCRLIAGAGVPVVSAIEGIGAGAAVGLALMGDRIVVGEGTKILFPF 483
            M+  VVLVDRPA HVAR+LINRP+KRNAID+DVRQQLT+AL TLL D++VRAIVFGGA+GVFSAGGDVPSMVGL+EAQARERMQHIHVLCRLIAGAGVPVVSAIEGIGAGAAVGLALMGDRIVVGE TKILFPF
Sbjct:    1 MTPAVVLVDRPALHVARVLINRPEKRNAIDFDVRQQLTEALSTLLIDSSVRAIVFGGAKGVFSAGGDVPSMVGLNEAQARERMQHIHVLCRLIAGAGVPVVSAIEGIGAGAAVGLALMGDRIVVGEDTKILFPF 134          
BLAST of mRNA_P-wetherbeei_contig53320.1.1 vs. uniprot
Match: UPI0008241430 (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Hydrogenophaga palleronii TaxID=65655 RepID=UPI0008241430)

HSP 1 Score: 224 bits (570), Expect = 4.100e-71
Identity = 119/134 (88.81%), Postives = 125/134 (93.28%), Query Frame = 1
Query:   82 MSARVVLVDRPAPHVARLLINRPDKRNAIDYDVRQQLTDALGTLLGDATVRAIVFGGAQGVFSAGGDVPSMVGLSEAQARERMQHIHVLCRLIAGAGVPVVSAIEGIGAGAAVGLALMGDRIVVGEGTKILFPF 483
            M+  VVLVDRPA HVARLLINRPDKRNAID+DVRQQLT+AL  LLGDA+VRAIVFGGAQGVFSAGGDVPSMVGLSEAQARERM+HIH LC+LIA AG PVVSAIEGIGAGAAVGLALMGDRIVVGE TKILFPF
Sbjct:    1 MTGAVVLVDRPALHVARLLINRPDKRNAIDFDVRQQLTEALAALLGDASVRAIVFGGAQGVFSAGGDVPSMVGLSEAQARERMRHIHTLCQLIAEAGAPVVSAIEGIGAGAAVGLALMGDRIVVGESTKILFPF 134          
BLAST of mRNA_P-wetherbeei_contig53320.1.1 vs. uniprot
Match: A0A317EA25_9PROT (Uncharacterized protein n=2 Tax=Zavarzinia compransoris TaxID=1264899 RepID=A0A317EA25_9PROT)

HSP 1 Score: 208 bits (529), Expect = 1.560e-64
Identity = 112/161 (69.57%), Postives = 126/161 (78.26%), Query Frame = 1
Query:    1 RSHPQPGRAAVAERLFGVHRRPRRGLNMSARVVLVDRPAPHVARLLINRPDKRNAIDYDVRQQLTDALGTLLGDATVRAIVFGGAQGVFSAGGDVPSMVGLSEAQARERMQHIHVLCRLIAGAGVPVVSAIEGIGAGAAVGLALMGDRIVVGEGTKILFPF 483
            R  PQPGR AVAE L G+HRR   GL ++A V+ +DRPAP VARLLINRPDKRNAID+ VRQ +TDAL  L  D  VRA+V GG  GVFSAGGD+PSM GL EA ARERM HIH LCRLIA A   VVSAIEG+GAG A+GLAL+GD I+VG GT+ILFPF
Sbjct:    7 RPDPQPGRPAVAECLLGLHRRAGGGLTVAAAVITLDRPAPRVARLLINRPDKRNAIDHAVRQAMTDALRELAADPGVRALVLGGTGGVFSAGGDLPSMAGLDEAAARERMAHIHNLCRLIAEAPCAVVSAIEGVGAGGAIGLALLGDEIIVGTGTRILFPF 167          
BLAST of mRNA_P-wetherbeei_contig53320.1.1 vs. uniprot
Match: UPI0015573611 (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Caenimonas soli TaxID=2735555 RepID=UPI0015573611)

HSP 1 Score: 196 bits (498), Expect = 3.420e-60
Identity = 101/134 (75.37%), Postives = 113/134 (84.33%), Query Frame = 1
Query:   82 MSARVVLVDRPAPHVARLLINRPDKRNAIDYDVRQQLTDALGTLLGDATVRAIVFGGAQGVFSAGGDVPSMVGLSEAQARERMQHIHVLCRLIAGAGVPVVSAIEGIGAGAAVGLALMGDRIVVGEGTKILFPF 483
            M+  VVL+DRPAPHVARL INRPDKRNAID+ VR+Q+T  L  LLGD   RA+VFGG  GVFSAGGDVPSMVGLS  QARERMQHIHVLCRL+AGA +PVVSA+EGI AGA VGL+L+GD IV G GTK+LFPF
Sbjct:    1 MAEPVVLLDRPAPHVARLRINRPDKRNAIDHAVREQITQHLRALLGDGETRALVFGGVDGVFSAGGDVPSMVGLSAEQARERMQHIHVLCRLVAGAPIPVVSAMEGIAAGAVVGLSLLGDHIVAGPGTKVLFPF 134          
BLAST of mRNA_P-wetherbeei_contig53320.1.1 vs. uniprot
Match: UPI001604012A (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Variovorax sp. UMC13 TaxID=1862326 RepID=UPI001604012A)

HSP 1 Score: 194 bits (492), Expect = 3.120e-59
Identity = 100/130 (76.92%), Postives = 115/130 (88.46%), Query Frame = 1
Query:   94 VVLVDRPAPHVARLLINRPDKRNAIDYDVRQQLTDALGTLLGDATVRAIVFGGAQGVFSAGGDVPSMVGLSEAQARERMQHIHVLCRLIAGAGVPVVSAIEGIGAGAAVGLALMGDRIVVGEGTKILFPF 483
            VVL+DRPAPHVARLLINRPDKRNAID+ VRQ+LT A+ ++  DA+VRA+VFGG  GVFSAGGDVPSM+GL EA AR RMQHI VLCR++A   +PVVSA+EGIGAGAAVGLAL+GD IVVGEGT+ILFPF
Sbjct:   10 VVLLDRPAPHVARLLINRPDKRNAIDHAVRQELTGAITSIGDDASVRALVFGGTAGVFSAGGDVPSMLGLDEAAARARMQHIAVLCRMVAALRIPVVSAVEGIGAGAAVGLALLGDHIVVGEGTRILFPF 139          
BLAST of mRNA_P-wetherbeei_contig53320.1.1 vs. uniprot
Match: A0A147H4D8_9BURK (Uncharacterized protein n=2 Tax=Pseudacidovorax TaxID=433923 RepID=A0A147H4D8_9BURK)

HSP 1 Score: 191 bits (486), Expect = 2.450e-58
Identity = 99/137 (72.26%), Postives = 113/137 (82.48%), Query Frame = 1
Query:   73 GLNMSARVVLVDRPAPHVARLLINRPDKRNAIDYDVRQQLTDALGTLLGDATVRAIVFGGAQGVFSAGGDVPSMVGLSEAQARERMQHIHVLCRLIAGAGVPVVSAIEGIGAGAAVGLALMGDRIVVGEGTKILFPF 483
            G N SA VVL+D PAPHVARL INRPDKRNAID  VRQ   D L  LL D  VRA+V GG +GVFSAGGD+PSMVGLS+AQARERMQHIH LCR++A A +PVVSA+EG+ AGAAVGLAL+GDRIV+G G ++LFPF
Sbjct:    2 GANASASVVLLDHPAPHVARLRINRPDKRNAIDQAVRQGFVDHLTVLLADPQVRALVLGGVEGVFSAGGDIPSMVGLSKAQARERMQHIHGLCRMVAHARIPVVSAMEGVTAGAAVGLALLGDRIVIGRGARVLFPF 138          
BLAST of mRNA_P-wetherbeei_contig53320.1.1 vs. uniprot
Match: UPI000BBCAC82 (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Magnetospirillum sp. 15-1 TaxID=1979370 RepID=UPI000BBCAC82)

HSP 1 Score: 191 bits (485), Expect = 2.650e-58
Identity = 99/134 (73.88%), Postives = 113/134 (84.33%), Query Frame = 1
Query:   82 MSARVVLVDRPAPHVARLLINRPDKRNAIDYDVRQQLTDALGTLLGDATVRAIVFGGAQGVFSAGGDVPSMVGLSEAQARERMQHIHVLCRLIAGAGVPVVSAIEGIGAGAAVGLALMGDRIVVGEGTKILFPF 483
            M+  VVLVDRPAPHVARLLINRP KRNAID+ VR  L + L  +L DAT+RA+VFGG  GVFSAGGD+PSM+ L E QARERM+HIH LCRL+A A +PVVSAIEGIGAG A+GLAL+GDRI+VGEGT ILFPF
Sbjct:    1 MAESVVLVDRPAPHVARLLINRPAKRNAIDHAVRTGLMEELTKVLDDATIRAVVFGGVGGVFSAGGDLPSMLDLDEEQARERMRHIHALCRLVANARIPVVSAIEGIGAGGAIGLALLGDRIIVGEGTTILFPF 134          
BLAST of mRNA_P-wetherbeei_contig53320.1.1 vs. uniprot
Match: A0A1L1PNM2_HYDIT (Enoyl-CoA hydratase n=2 Tax=Hydrogenophaga TaxID=47420 RepID=A0A1L1PNM2_HYDIT)

HSP 1 Score: 191 bits (485), Expect = 3.080e-58
Identity = 99/134 (73.88%), Postives = 114/134 (85.07%), Query Frame = 1
Query:   82 MSARVVLVDRPAPHVARLLINRPDKRNAIDYDVRQQLTDALGTLLGDATVRAIVFGGAQGVFSAGGDVPSMVGLSEAQARERMQHIHVLCRLIAGAGVPVVSAIEGIGAGAAVGLALMGDRIVVGEGTKILFPF 483
            M+ +VVL DRPAPHVARL INRPDKRNAID+ VRQ   + L  L  DA VRAIV GG +GVFSAGGD+PSM+GL EAQARERM+HIHVLCRL+AGA VPVVSA+EG+ AGAAVGLAL+GDRIV+G G ++LFPF
Sbjct:    1 MNDKVVLFDRPAPHVARLRINRPDKRNAIDHAVRQGFIEHLLALQDDAEVRAIVLGGVEGVFSAGGDIPSMLGLDEAQARERMRHIHVLCRLVAGARVPVVSAMEGVTAGAAVGLALLGDRIVIGRGARVLFPF 134          
BLAST of mRNA_P-wetherbeei_contig53320.1.1 vs. uniprot
Match: UPI00189287A7 (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Azospirillum sp. INR13 TaxID=2596919 RepID=UPI00189287A7)

HSP 1 Score: 191 bits (484), Expect = 3.760e-58
Identity = 101/130 (77.69%), Postives = 111/130 (85.38%), Query Frame = 1
Query:   94 VVLVDRPAPHVARLLINRPDKRNAIDYDVRQQLTDALGTLLGDATVRAIVFGGAQGVFSAGGDVPSMVGLSEAQARERMQHIHVLCRLIAGAGVPVVSAIEGIGAGAAVGLALMGDRIVVGEGTKILFPF 483
            VVLVDRP+P VARLLINRPDKRNAID+ VR ++ +AL  L GD TVRA+VFGG  GVFSAGGD+PSMVGL E  AR RM+HIH LCRLIA + VPVVSAIEGIGAG AVGLAL+GDRIVVG GTKILFPF
Sbjct:    5 VVLVDRPSPRVARLLINRPDKRNAIDHAVRAEMIEALTALAGDRTVRALVFGGRDGVFSAGGDIPSMVGLDEDGARARMRHIHSLCRLIADSPVPVVSAIEGIGAGGAVGLALLGDRIVVGPGTKILFPF 134          
BLAST of mRNA_P-wetherbeei_contig53320.1.1 vs. uniprot
Match: UPI0018CB874A (enoyl-CoA hydratase-related protein n=1 Tax=Caenimonas sp. DR4.4 TaxID=2793270 RepID=UPI0018CB874A)

HSP 1 Score: 189 bits (481), Expect = 1.280e-57
Identity = 100/134 (74.63%), Postives = 109/134 (81.34%), Query Frame = 1
Query:   82 MSARVVLVDRPAPHVARLLINRPDKRNAIDYDVRQQLTDALGTLLGDATVRAIVFGGAQGVFSAGGDVPSMVGLSEAQARERMQHIHVLCRLIAGAGVPVVSAIEGIGAGAAVGLALMGDRIVVGEGTKILFPF 483
            M   VVLVDRPAPHVARL INRPDKRNAIDYDVRQ   +AL  LL D++VRA+VFGG QGVFSAGGDV SM GL E  ARER +HIH LCRL+AGA +PVVSA+EG  AGA VGLAL+GD IV G GTKILFPF
Sbjct:    1 MGEPVVLVDRPAPHVARLRINRPDKRNAIDYDVRQGFIEALPALLADSSVRALVFGGVQGVFSAGGDVASMEGLDEQGARERFRHIHKLCRLVAGARIPVVSAMEGFSAGAVVGLALLGDHIVAGPGTKILFPF 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53320.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N2TA32_9PROT4.100e-7188.81Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
UPI00082414304.100e-7188.81enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A317EA25_9PROT1.560e-6469.57Uncharacterized protein n=2 Tax=Zavarzinia compran... [more]
UPI00155736113.420e-6075.37enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
UPI001604012A3.120e-5976.92enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A147H4D8_9BURK2.450e-5872.26Uncharacterized protein n=2 Tax=Pseudacidovorax Ta... [more]
UPI000BBCAC822.650e-5873.88enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A1L1PNM2_HYDIT3.080e-5873.88Enoyl-CoA hydratase n=2 Tax=Hydrogenophaga TaxID=4... [more]
UPI00189287A73.760e-5877.69enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
UPI0018CB874A1.280e-5774.63enoyl-CoA hydratase-related protein n=1 Tax=Caenim... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53320contigP-wetherbeei_contig53320:3..485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1394178.AWOO02000070_gene340
PFAMsECH_1
Model size483
Max annot lvl201174|Actinobacteria
KEGG rclassRC00004,RC00326,RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115,RC02689,RC03003
KEGG koko:K01692,ko:K15866
KEGG ReactionR03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093,R09837,R09839
KEGG Pathwayko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212
KEGG ModuleM00032,M00087
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.91e-21
EggNOG OGsCOG1024@1|root,COG1024@2|Bacteria,2GJDK@201174|Actinobacteria,4EPD9@85012|Streptosporangiales
EC4.2.1.17,5.3.3.18
DescriptionEnoyl-CoA hydratase/isomerase
Cds size483
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186798.1575048-CDS-P-wetherbeei_contig53320:2..4851683186798.1575048-CDS-P-wetherbeei_contig53320:2..485Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53320 3..485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53320.1.1prot_P-wetherbeei_contig53320.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53320 3..485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53320.1.1

>prot_P-wetherbeei_contig53320.1.1 ID=prot_P-wetherbeei_contig53320.1.1|Name=mRNA_P-wetherbeei_contig53320.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
RSHPQPGRAAVAERLFGVHRRPRRGLNMSARVVLVDRPAPHVARLLINRP
DKRNAIDYDVRQQLTDALGTLLGDATVRAIVFGGAQGVFSAGGDVPSMVG
LSEAQARERMQHIHVLCRLIAGAGVPVVSAIEGIGAGAAVGLALMGDRIV
VGEGTKILFPF
back to top

mRNA from alignment at P-wetherbeei_contig53320:3..485-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53320.1.1 ID=mRNA_P-wetherbeei_contig53320.1.1|Name=mRNA_P-wetherbeei_contig53320.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig53320:3..485- (Phaeothamnion wetherbeei SAG_119_79)
CGGTCTCACCCACAACCTGGGCGGGCAGCCGTCGCAGAACGTCTGTTCGG TGTCCATCGTCGGCCGCGAAGGGGTTTGAACATGAGCGCTCGCGTCGTCC TGGTGGACCGCCCCGCGCCGCATGTCGCGCGGCTGCTGATCAACCGTCCC GACAAGCGCAACGCGATCGATTACGACGTGCGCCAGCAGCTCACTGACGC GCTGGGCACGCTGCTGGGCGACGCCACCGTGCGCGCCATCGTGTTCGGTG GCGCGCAGGGCGTGTTCTCCGCCGGTGGCGACGTGCCCAGCATGGTGGGC CTCAGCGAAGCCCAGGCGCGCGAGCGCATGCAGCACATCCACGTGCTCTG CCGCCTCATCGCCGGCGCCGGCGTGCCGGTGGTCAGCGCCATCGAAGGCA TTGGCGCGGGCGCGGCGGTGGGCCTGGCCCTGATGGGCGACCGCATCGTT GTCGGCGAGGGCACCAAGATCCTGTTCCCCTTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig53320:3..485-

>mRNA_P-wetherbeei_contig53320.1.1 ID=mRNA_P-wetherbeei_contig53320.1.1|Name=mRNA_P-wetherbeei_contig53320.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig53320:3..485- (Phaeothamnion wetherbeei SAG_119_79)
CGGTCTCACCCACAACCTGGGCGGGCAGCCGTCGCAGAACGTCTGTTCGG
TGTCCATCGTCGGCCGCGAAGGGGTTTGAACATGAGCGCTCGCGTCGTCC
TGGTGGACCGCCCCGCGCCGCATGTCGCGCGGCTGCTGATCAACCGTCCC
GACAAGCGCAACGCGATCGATTACGACGTGCGCCAGCAGCTCACTGACGC
GCTGGGCACGCTGCTGGGCGACGCCACCGTGCGCGCCATCGTGTTCGGTG
GCGCGCAGGGCGTGTTCTCCGCCGGTGGCGACGTGCCCAGCATGGTGGGC
CTCAGCGAAGCCCAGGCGCGCGAGCGCATGCAGCACATCCACGTGCTCTG
CCGCCTCATCGCCGGCGCCGGCGTGCCGGTGGTCAGCGCCATCGAAGGCA
TTGGCGCGGGCGCGGCGGTGGGCCTGGCCCTGATGGGCGACCGCATCGTT
GTCGGCGAGGGCACCAAGATCCTGTTCCCCTTC
back to top