mRNA_P-wetherbeei_contig53294.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53294.1.1
Unique NamemRNA_P-wetherbeei_contig53294.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53294.1.1 vs. uniprot
Match: A0A7Z9UDT8_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UDT8_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 1.250e-8
Identity = 36/94 (38.30%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    1 MDDFGKKAKEGFLSGISFLKSKAKETVDLQKLSSQHKALETRRDECLMEVGQRVFVFFEMDRVQTLEEADWEPIRPRIDEVKDINRKLQEIDEQ 282
            MD  G  AK+G    + F+KS+AKETV++QKLSS  K LE RR+ CL+++G RV   +  D++      D E  + R++E   + +++Q++ E+
Sbjct:    1 MDRLGDSAKKG----LDFIKSRAKETVEVQKLSSTLKQLEDRRERCLLDLGHRVLAAYGTDKM-----CD-ESFQDRVEEANYLTQQIQKVKEE 84
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53294.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Z9UDT8_9BACT1.250e-838.30Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53294contigP-wetherbeei_contig53294:28..327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size300
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186797.9155865-CDS-P-wetherbeei_contig53294:27..3271683186797.9155865-CDS-P-wetherbeei_contig53294:27..327Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53294 28..327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53294.1.1prot_P-wetherbeei_contig53294.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53294 28..327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53294.1.1

>prot_P-wetherbeei_contig53294.1.1 ID=prot_P-wetherbeei_contig53294.1.1|Name=mRNA_P-wetherbeei_contig53294.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
MDDFGKKAKEGFLSGISFLKSKAKETVDLQKLSSQHKALETRRDECLMEV
GQRVFVFFEMDRVQTLEEADWEPIRPRIDEVKDINRKLQEIDEQMTALKA
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mRNA from alignment at P-wetherbeei_contig53294:28..327+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53294.1.1 ID=mRNA_P-wetherbeei_contig53294.1.1|Name=mRNA_P-wetherbeei_contig53294.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig53294:28..327+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGATTTCGGTAAGAAAGCCAAAGAGGGATTCCTCAGCGGCATCAG
CTTTCTCAAGAGTAAAGCCAAGGAAACGGTTGATCTGCAAAAGCTGAGTT
CGCAGCACAAGGCGTTGGAGACCCGACGCGACGAGTGCCTGATGGAAGTC
GGCCAGCGCGTTTTCGTATTCTTCGAAATGGACCGCGTGCAGACTTTGGA
AGAAGCCGACTGGGAACCCATTCGGCCGCGCATCGATGAAGTCAAGGATA
TCAATCGCAAGCTACAGGAAATCGACGAACAGATGACGGCTCTCAAGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53294:28..327+

>mRNA_P-wetherbeei_contig53294.1.1 ID=mRNA_P-wetherbeei_contig53294.1.1|Name=mRNA_P-wetherbeei_contig53294.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig53294:28..327+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGATTTCGGTAAGAAAGCCAAAGAGGGATTCCTCAGCGGCATCAG
CTTTCTCAAGAGTAAAGCCAAGGAAACGGTTGATCTGCAAAAGCTGAGTT
CGCAGCACAAGGCGTTGGAGACCCGACGCGACGAGTGCCTGATGGAAGTC
GGCCAGCGCGTTTTCGTATTCTTCGAAATGGACCGCGTGCAGACTTTGGA
AGAAGCCGACTGGGAACCCATTCGGCCGCGCATCGATGAAGTCAAGGATA
TCAATCGCAAGCTACAGGAAATCGACGAACAGATGACGGCTCTCAAGGCC
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