mRNA_P-wetherbeei_contig53290.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53290.1.1
Unique NamemRNA_P-wetherbeei_contig53290.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53290.1.1 vs. uniprot
Match: A0A7C9KCG1_9PROT (ABC transporter permease subunit n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C9KCG1_9PROT)

HSP 1 Score: 191 bits (485), Expect = 2.180e-58
Identity = 96/161 (59.63%), Postives = 129/161 (80.12%), Query Frame = 1
Query:    1 LLLGMRRFLAAVLEPYINYLAATPKIIFLPIMMVMFGVGAGSKIAMAAISAFFPVAVSVYRGTLLVNPVLVRVARSFKASQWTIVKSIYLPSIIPPLMTGLRLGLGVAIVGTLLAEIKLSNKGLGYVVIQHYNFFRTADMYAVLIIIFAIAVGINAVMDRL 483
            +L G+RRFL  V++ YI  LA  PK++FLPI+MV+FG+G GSKIAMAA+SAFFPV +S   G LL+NP  ++V RSF A  W +V  +YLPS++ P++TGLRLGLGVAI+GTL+AEIKLSN GLG++ IQ+Y  FR  +MYAV+I+IFA+A+G NA+M ++
Sbjct:   62 ILFGVRRFLGRVMDGYILALAPAPKVVFLPILMVVFGIGVGSKIAMAAMSAFFPVVLSTVAGMLLINPTFIKVGRSFNAGPWQMVSKVYLPSLVLPVITGLRLGLGVAIIGTLIAEIKLSNAGLGFLAIQYYEMFRIPEMYAVIIVIFALAMGANALMTKV 222          
BLAST of mRNA_P-wetherbeei_contig53290.1.1 vs. uniprot
Match: A0A1F4AY07_9PROT (ABC transmembrane type-1 domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4AY07_9PROT)

HSP 1 Score: 186 bits (472), Expect = 1.410e-56
Identity = 98/167 (58.68%), Postives = 126/167 (75.45%), Query Frame = 1
Query:    4 LLGMRRFLAAVLEPYINYLAATPKIIFLPIMMVMFGVGAGSKIAMAAISAFFPVAVSVYRGTLLVNPVLVRVARSFKASQWTIVKSIYLPSIIPPLMTGLRLGLGVAIVGTLLAEIKLSNKGLGYVVIQHYNFFRTADMYAVLIIIFAIAVGINAVMDRLAGHFQHK 504
            L+G+  FL  +  PYI+ LA TPKIIFLP++M++FGV  GSKIAM AISAFFPV V+ Y    LV PVL+RVARSF+AS+W  V  +Y PS++P ++TG+RLGLGVAI+GTLLAEIKLSN+GLG++ IQ Y  F   D+YAVL+IIF +AV  N  + R+A   Q +
Sbjct:   53 LMGVAVFLGRMAHPYIHVLAPTPKIIFLPVLMILFGVDIGSKIAMGAISAFFPVVVATYDSVRLVPPVLLRVARSFRASRWQTVVKVYFPSMLPAVVTGMRLGLGVAIIGTLLAEIKLSNRGLGFLAIQRYEGFHIPDLYAVLLIIFVLAVAANIAIGRVADRLQRR 219          
BLAST of mRNA_P-wetherbeei_contig53290.1.1 vs. uniprot
Match: UPI001C1EC64C (ABC transporter permease n=1 Tax=Rhizobium sp. WYJ-E13 TaxID=2849093 RepID=UPI001C1EC64C)

HSP 1 Score: 181 bits (458), Expect = 6.030e-54
Identity = 95/160 (59.38%), Postives = 123/160 (76.88%), Query Frame = 1
Query:   25 LAAVLEPYINYLAATPKIIFLPIMMVMFGVGAGSKIAMAAISAFFPVAVSVYRGTLLVNPVLVRVARSFKASQWTIVKSIYLPSIIPPLMTGLRLGLGVAIVGTLLAEIKLSNKGLGYVVIQHYNFFRTADMYAVLIIIFAIAVGINAVMDRLAGHFQHK 504
            LA +L P++NYLA TPKI+FLPI+++ FGVG GSKIAMA+ISAFFPVA++ YRG   +N V +RVA SF A++  ++  ++LPS++ P++T LRL LGVA VGTLLAEIKLSN+GLGY++IQHYN  R  DMYA+LII FAI +  NA MD L      +
Sbjct:  105 LARLLSPWVNYLAPTPKIVFLPILLLGFGVGMGSKIAMASISAFFPVAMATYRGVQQINGVHIRVAFSFNATRMQLLTKVFLPSLVAPVVTALRLALGVAFVGTLLAEIKLSNQGLGYLIIQHYNAMRIPDMYAILIITFAIVMAANAAMDGLVAAIMRR 264          
BLAST of mRNA_P-wetherbeei_contig53290.1.1 vs. uniprot
Match: UPI001FEE054D (ABC transporter permease n=1 Tax=Pseudolabrys sp. FHR47 TaxID=2562284 RepID=UPI001FEE054D)

HSP 1 Score: 178 bits (452), Expect = 3.330e-53
Identity = 91/162 (56.17%), Postives = 120/162 (74.07%), Query Frame = 1
Query:    4 LLGMRRFLAAVLEPYINYLAATPKIIFLPIMMVMFGVGAGSKIAMAAISAFFPVAVSVYRGTLLVNPVLVRVARSFKASQWTIVKSIYLPSIIPPLMTGLRLGLGVAIVGTLLAEIKLSNKGLGYVVIQHYNFFRTADMYAVLIIIFAIAVGINAVMDRLAG 489
            LLG  RF    LEPYI YL  TPKIIF PIM++ FGVG GSKIAM A+S FFP+A+S   G   ++PVL+RV RSF+A  W + + +YLP++ P +M G+RLGLG+AI+GTLLAE KLSN+G+GY+++Q Y+ F    MYA+LI +FA A+G NA++ R  G
Sbjct:   90 LLGGSRFFGRALEPYIYYLGPTPKIIFFPIMIMWFGVGPGSKIAMGAVSCFFPIALSAAAGMRQIDPVLIRVGRSFRAKGWQMAQKVYLPAMRPSVMNGIRLGLGIAIIGTLLAETKLSNRGIGYLIMQAYSIFDMPRMYALLITLFAFAIGANAIVSRFGG 251          
BLAST of mRNA_P-wetherbeei_contig53290.1.1 vs. uniprot
Match: A0A833GDH2_9HYPH (ABC transporter permease subunit n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GDH2_9HYPH)

HSP 1 Score: 177 bits (448), Expect = 4.210e-53
Identity = 91/163 (55.83%), Postives = 123/163 (75.46%), Query Frame = 1
Query:    1 LLLGMRRFLAAVLEPYINYLAATPKIIFLPIMMVMFGVGAGSKIAMAAISAFFPVAVSVYRGTLLVNPVLVRVARSFKASQWTIVKSIYLPSIIPPLMTGLRLGLGVAIVGTLLAEIKLSNKGLGYVVIQHYNFFRTADMYAVLIIIFAIAVGINAVMDRLAG 489
            L LG  RFLA   EPY+ YL  TPKIIF PIM++ FGVG GSK+A+ A+S FFPVA+SV  G   ++PVL+RV RSF+A  W +   IYLP++  P++ G+RLGLGVA++GTLLAE KLSN+G+G+++IQ Y+ F    MYA+L+++F +AVG NA++ RL G
Sbjct:   48 LALGRSRFLARAFEPYLYYLGPTPKIIFFPIMIMWFGVGPGSKVALGALSCFFPVALSVAAGMRQIDPVLIRVGRSFRARSWQMAWKIYLPAMRHPIINGVRLGLGVALIGTLLAETKLSNRGIGFLIIQAYSLFDMPRMYAMLVVLFVLAVGANALVGRLGG 210          
BLAST of mRNA_P-wetherbeei_contig53290.1.1 vs. uniprot
Match: A0A0Q7TMJ6_9HYPH (Taurine ABC transporter n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TMJ6_9HYPH)

HSP 1 Score: 178 bits (451), Expect = 5.620e-53
Identity = 93/162 (57.41%), Postives = 119/162 (73.46%), Query Frame = 1
Query:    4 LLGMRRFLAAVLEPYINYLAATPKIIFLPIMMVMFGVGAGSKIAMAAISAFFPVAVSVYRGTLLVNPVLVRVARSFKASQWTIVKSIYLPSIIPPLMTGLRLGLGVAIVGTLLAEIKLSNKGLGYVVIQHYNFFRTADMYAVLIIIFAIAVGINAVMDRLAG 489
            LLG  RF    LEPYI YL  TPKIIF PIM++ FGVG GSKIAM A+S FFP+A+S   G   +  VL+RV RSF+ASQW +   IYLP++ P +M G+RLGLG+AI+GTLLAE KLSN+G+GY+++Q Y+ F    MYA+LI +FA A+G NA++ R  G
Sbjct:   96 LLGGSRFFGRALEPYIYYLGPTPKIIFFPIMIMWFGVGPGSKIAMGAVSCFFPIALSAAAGMRQIEAVLIRVGRSFRASQWQMAMKIYLPAMRPAVMNGIRLGLGIAIIGTLLAETKLSNRGIGYLIMQAYSVFDMPRMYALLITLFAFAIGANAIVGRFGG 257          
BLAST of mRNA_P-wetherbeei_contig53290.1.1 vs. uniprot
Match: UPI0018D20F9A (ABC transporter permease n=2 Tax=Hyphomicrobiales TaxID=356 RepID=UPI0018D20F9A)

HSP 1 Score: 177 bits (449), Expect = 6.100e-53
Identity = 92/163 (56.44%), Postives = 126/163 (77.30%), Query Frame = 1
Query:    7 LGMRRFLAAVLEPYINYLAATPKIIFLPIMMVMFGVGAGSKIAMAAISAFFPVAVSVYRGTLLVNPVLVRVARSFKASQWTIVKSIYLPSIIPPLMTGLRLGLGVAIVGTLLAEIKLSNKGLGYVVIQHYNFFRTADMYAVLIIIFAIAVGINAVMDRLAGHF 495
            LG+ R LAAVL+P++  LA  PKI+FLPI+MV+FG+ AG KIAMAAISAFFPVAV+ + G   V+P+L+RV RSF AS   +V+ +YLPSI+ P++  LRL  GVA++G LLAE+K+SN+GLGY++IQ YN FRTA+MYA+LI +F +A+ +NA +      +
Sbjct:   76 LGVSRLLAAVLDPWVRALAPAPKIVFLPILMVVFGIDAGPKIAMAAISAFFPVAVATFGGMRGVSPILIRVVRSFDASLLQLVRLVYLPSIVVPVLGSLRLATGVALIGALLAEVKMSNRGLGYLIIQDYNAFRTAEMYALLISVFTLALAVNAALRAFGRRY 238          
BLAST of mRNA_P-wetherbeei_contig53290.1.1 vs. uniprot
Match: A0A0Q3PNH1_9HYPH (ABC transmembrane type-1 domain-containing protein n=3 Tax=Bosea TaxID=85413 RepID=A0A0Q3PNH1_9HYPH)

HSP 1 Score: 176 bits (445), Expect = 4.390e-52
Identity = 93/159 (58.49%), Postives = 126/159 (79.25%), Query Frame = 1
Query:   19 RFLAAVLEPYINYLAATPKIIFLPIMMVMFGVGAGSKIAMAAISAFFPVAVSVYRGTLLVNPVLVRVARSFKASQWTIVKSIYLPSIIPPLMTGLRLGLGVAIVGTLLAEIKLSNKGLGYVVIQHYNFFRTADMYAVLIIIFAIAVGINAVMDRLAGHF 495
            RFLAA+L+P+I  LA  PKIIFLP++++ FG+ AG KIAMAAIS+FFPVAV+ + G   V  +LV+V RSF AS   +V+ IYLPSI+ PL+  LRL +GVA++G LLAE+K+SNKGLGY++IQ YN FRTA+MYA+L+++FA+A+ INAV+  +   F
Sbjct:  100 RFLAAMLDPWIRALAPAPKIIFLPVLILAFGIDAGPKIAMAAISSFFPVAVATFGGMREVRRILVQVVRSFDASTLQLVRIIYLPSIVVPLLGSLRLAVGVALIGALLAEVKMSNKGLGYLIIQDYNAFRTAEMYALLLLVFALALSINAVLRAIGRRF 258          
BLAST of mRNA_P-wetherbeei_contig53290.1.1 vs. uniprot
Match: A0A1Q4DDT9_9HYPH (Taurine ABC transporter n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DDT9_9HYPH)

HSP 1 Score: 173 bits (438), Expect = 1.370e-51
Identity = 90/163 (55.21%), Postives = 122/163 (74.85%), Query Frame = 1
Query:    1 LLLGMRRFLAAVLEPYINYLAATPKIIFLPIMMVMFGVGAGSKIAMAAISAFFPVAVSVYRGTLLVNPVLVRVARSFKASQWTIVKSIYLPSIIPPLMTGLRLGLGVAIVGTLLAEIKLSNKGLGYVVIQHYNFFRTADMYAVLIIIFAIAVGINAVMDRLAG 489
            LLLG  RFLAA  E Y+ YL  TPKIIF PI+++ FGVG GSKIAM  +SAFFP+A+SV  G   ++ VL+RV +SF+A+ W +   IY+P++  P++ G+RLGLGV ++GTLLAE KLSNKG+GY++IQ Y  F    MYA+LI++F +A+G NA++ RL G
Sbjct:   48 LLLGGNRFLAAAFESYLYYLGPTPKIIFFPILIMWFGVGPGSKIAMGVLSAFFPIALSVAAGMREIDRVLIRVGKSFRATTWQMATKIYVPAMRHPIINGVRLGLGVGLIGTLLAETKLSNKGIGYLIIQAYTLFDMPRMYAMLIVLFVLAIGANALVGRLGG 210          
BLAST of mRNA_P-wetherbeei_contig53290.1.1 vs. uniprot
Match: A0A537KZB9_9PROT (ABC transporter permease subunit n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537KZB9_9PROT)

HSP 1 Score: 173 bits (439), Expect = 3.640e-51
Identity = 90/163 (55.21%), Postives = 120/163 (73.62%), Query Frame = 1
Query:    1 LLLGMRRFLAAVLEPYINYLAATPKIIFLPIMMVMFGVGAGSKIAMAAISAFFPVAVSVYRGTLLVNPVLVRVARSFKASQWTIVKSIYLPSIIPPLMTGLRLGLGVAIVGTLLAEIKLSNKGLGYVVIQHYNFFRTADMYAVLIIIFAIAVGINAVMDRLAG 489
            +LLG  R L    E Y+ YL  TPKIIF P+M++ FGVG GSK+AM  IS FFPVA+S   G   +NPVL+RV RSF+AS W +V  IYLP++  P + G+RLGLGVAI+GTLLAE KLSN+G+G+++I  Y+ F    MYA+LI++F +++G+NAV+ RL G
Sbjct:   93 ILLGSNRLLGRAFEAYLYYLGPTPKIIFFPVMIMWFGVGPGSKVAMGTISCFFPVALSAAAGMREINPVLIRVGRSFRASTWQMVTKIYLPAMRLPAINGVRLGLGVAIIGTLLAETKLSNRGIGFLIINAYSTFDMPRMYALLIVLFVLSIGVNAVVGRLGG 255          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53290.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C9KCG1_9PROT2.180e-5859.63ABC transporter permease subunit n=1 Tax=Alphaprot... [more]
A0A1F4AY07_9PROT1.410e-5658.68ABC transmembrane type-1 domain-containing protein... [more]
UPI001C1EC64C6.030e-5459.38ABC transporter permease n=1 Tax=Rhizobium sp. WYJ... [more]
UPI001FEE054D3.330e-5356.17ABC transporter permease n=1 Tax=Pseudolabrys sp. ... [more]
A0A833GDH2_9HYPH4.210e-5355.83ABC transporter permease subunit n=1 Tax=Pseudorho... [more]
A0A0Q7TMJ6_9HYPH5.620e-5357.41Taurine ABC transporter n=1 Tax=Pseudolabrys sp. R... [more]
UPI0018D20F9A6.100e-5356.44ABC transporter permease n=2 Tax=Hyphomicrobiales ... [more]
A0A0Q3PNH1_9HYPH4.390e-5258.49ABC transmembrane type-1 domain-containing protein... [more]
A0A1Q4DDT9_9HYPH1.370e-5155.21Taurine ABC transporter n=1 Tax=Rhizobiales bacter... [more]
A0A537KZB9_9PROT3.640e-5155.21ABC transporter permease subunit n=1 Tax=Alphaprot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53290contigP-wetherbeei_contig53290:1..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1144310.PMI07_005439
PFAMsBPD_transp_1
Model size510
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02050
KEGG TC3.A.1.16,3.A.1.17
KEGG ModuleM00188
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.36e-45
EggNOG OGsCOG0600@1|root,COG0600@2|Bacteria,1PF1W@1224|Proteobacteria,2UQ2K@28211|Alphaproteobacteria,4BJDU@82115|Rhizobiaceae
DescriptionBinding-protein-dependent transport system inner membrane component
Cds size498
COG categoryP
BRITEko00000,ko00002,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186797.8375714-UTR-P-wetherbeei_contig53290:0..121683186797.8375714-UTR-P-wetherbeei_contig53290:0..12Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53290 1..12 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186797.850187-CDS-P-wetherbeei_contig53290:12..5101683186797.850187-CDS-P-wetherbeei_contig53290:12..510Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53290 13..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53290.1.1prot_P-wetherbeei_contig53290.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53290 13..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53290.1.1

>prot_P-wetherbeei_contig53290.1.1 ID=prot_P-wetherbeei_contig53290.1.1|Name=mRNA_P-wetherbeei_contig53290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MRRFLAAVLEPYINYLAATPKIIFLPIMMVMFGVGAGSKIAMAAISAFFP
VAVSVYRGTLLVNPVLVRVARSFKASQWTIVKSIYLPSIIPPLMTGLRLG
LGVAIVGTLLAEIKLSNKGLGYVVIQHYNFFRTADMYAVLIIIFAIAVGI
NAVMDRLAGHFQHKA*
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mRNA from alignment at P-wetherbeei_contig53290:1..510+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53290.1.1 ID=mRNA_P-wetherbeei_contig53290.1.1|Name=mRNA_P-wetherbeei_contig53290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig53290:1..510+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGTTGGGAATGCGCCGGTTCCTTGCCGCTGTCCTGGAGCCCTACAT TAATTACCTCGCCGCCACGCCCAAGATTATTTTCCTGCCGATCATGATGG TGATGTTCGGGGTCGGTGCAGGCTCGAAGATCGCAATGGCCGCGATTTCC GCTTTCTTCCCTGTCGCAGTCTCGGTGTACCGCGGCACCCTGCTCGTCAA TCCTGTCCTCGTGCGCGTCGCACGCAGCTTCAAGGCGAGCCAGTGGACGA TCGTCAAGAGCATCTACCTGCCTTCGATCATTCCCCCCTTGATGACGGGG TTGCGTCTTGGGCTCGGCGTCGCGATCGTCGGCACGCTGCTGGCTGAGAT CAAGCTATCGAACAAGGGGCTGGGCTACGTCGTCATCCAGCACTACAATT TCTTCCGCACTGCCGACATGTACGCGGTTCTCATCATCATCTTCGCAATC GCCGTCGGCATCAATGCGGTGATGGACCGTCTCGCGGGTCATTTCCAACA TAAGGCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53290:1..510+

>mRNA_P-wetherbeei_contig53290.1.1 ID=mRNA_P-wetherbeei_contig53290.1.1|Name=mRNA_P-wetherbeei_contig53290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig53290:1..510+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCGGTTCCTTGCCGCTGTCCTGGAGCCCTACATTAATTACCTCGC
CGCCACGCCCAAGATTATTTTCCTGCCGATCATGATGGTGATGTTCGGGG
TCGGTGCAGGCTCGAAGATCGCAATGGCCGCGATTTCCGCTTTCTTCCCT
GTCGCAGTCTCGGTGTACCGCGGCACCCTGCTCGTCAATCCTGTCCTCGT
GCGCGTCGCACGCAGCTTCAAGGCGAGCCAGTGGACGATCGTCAAGAGCA
TCTACCTGCCTTCGATCATTCCCCCCTTGATGACGGGGTTGCGTCTTGGG
CTCGGCGTCGCGATCGTCGGCACGCTGCTGGCTGAGATCAAGCTATCGAA
CAAGGGGCTGGGCTACGTCGTCATCCAGCACTACAATTTCTTCCGCACTG
CCGACATGTACGCGGTTCTCATCATCATCTTCGCAATCGCCGTCGGCATC
AATGCGGTGATGGACCGTCTCGCGGGTCATTTCCAACATAAGGCGTGA
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