mRNA_P-wetherbeei_contig53272.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53272.1.1
Unique NamemRNA_P-wetherbeei_contig53272.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53272.1.1 vs. uniprot
Match: A0A7C4TPF9_9HYPH (Ribonucleotide-diphosphate reductase subunit beta n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TPF9_9HYPH)

HSP 1 Score: 251 bits (640), Expect = 4.840e-81
Identity = 118/163 (72.39%), Postives = 141/163 (86.50%), Query Frame = 1 
Query:    1 MRIEYHRTLVSDRVRNAAFHAALKAVIRPGETIVADIGAGTGLLGMMAAKLGAKEVYLYETAAVAGLCNDLLKRNRMRNCMLFPCHSTEMESPPKVDVVISETLGNYPLEEDIVATLRDAKKRHLKPGGVMIPSRVAQFVAPVVAARVHKELMAWDRIGYDLD 489
            MRIEYHRTL++D VRNAA +AALKA+IRPGET VADIGAGTG +G++AA+LGA+EVYLYE A VA +   +L RN  RNC L+PCHSTEM SPP+VDVV+SETLGNYPLEE+I+AT+RDA++RHLKPGGV+IP R+AQFVAPVV  RVH EL  WDR+G+ LD
Sbjct:    1 MRIEYHRTLIADHVRNAALYAALKALIRPGETTVADIGAGTGFIGLLAARLGAREVYLYECADVARVAEAVLARNGARNCRLYPCHSTEMRSPPRVDVVVSETLGNYPLEENIIATMRDARRRHLKPGGVLIPRRIAQFVAPVVNPRVHTELTEWDRVGFGLD 163
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BLAST of mRNA_P-wetherbeei_contig53272.1.1 vs. uniprot
Match: A0A2W4RVR5_9PROT (Ribonucleotide-diphosphate reductase subunit beta n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4RVR5_9PROT)

HSP 1 Score: 239 bits (609), Expect = 2.410e-76
Identity = 111/163 (68.10%), Postives = 136/163 (83.44%), Query Frame = 1 
Query:    1 MRIEYHRTLVSDRVRNAAFHAALKAVIRPGETIVADIGAGTGLLGMMAAKLGAKEVYLYETAAVAGLCNDLLKRNRMRNCMLFPCHSTEMESPPKVDVVISETLGNYPLEEDIVATLRDAKKRHLKPGGVMIPSRVAQFVAPVVAARVHKELMAWDRIGYDLD 489
            MRIEYHRTL++DRVRN AF AAL  VIR GET+VADIGAGTGLLG+MAA+LGA+EVYLYE A VA +  ++LK+NR RNC L PCHSTEM+ PP+VDVV+SETLGNYP EE+I+ T+ DA +RHLK GG++IP R+ Q+VAPVV  R+H EL AW+R+G  +D
Sbjct:    1 MRIEYHRTLIADRVRNDAFKAALSRVIRKGETVVADIGAGTGLLGLMAARLGAREVYLYEMAEVAAVAQEILKKNRARNCHLMPCHSTEMQDPPRVDVVVSETLGNYPFEENIIETMNDAVRRHLKRGGIVIPGRLTQYVAPVVTDRIHTELTAWERVGNGID 163
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BLAST of mRNA_P-wetherbeei_contig53272.1.1 vs. uniprot
Match: A0A2S5PB62_HYPSQ (Ribonucleotide-diphosphate reductase subunit beta n=2 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5PB62_HYPSQ)

HSP 1 Score: 236 bits (601), Expect = 4.430e-75
Identity = 113/162 (69.75%), Postives = 134/162 (82.72%), Query Frame = 1 
Query:    1 MRIEYHRTLVSDRVRNAAFHAALKAVIRPGETIVADIGAGTGLLGMMAAKLGAKEVYLYETAAVAGLCNDLLKRNRMRNCMLFPCHSTEMESPPKVDVVISETLGNYPLEEDIVATLRDAKKRHLKPGGVMIPSRVAQFVAPVVAARVHKELMAWDRIGYDL 486
            MRIEYHRTL++D VRNAAFHAALKA I PG T VADIGAGTGLLG+MAA+LGAK+V+LYETA VAG+   +L RNR RNC +FPCHSTEM+ PP+VDVV+SETLGNY LEE+I+ T +DA  RHLKPGG +IP +V Q V PVV +R+ +E  AWDR+G DL
Sbjct:    1 MRIEYHRTLIADLVRNAAFHAALKAAIVPGVTTVADIGAGTGLLGLMAARLGAKDVFLYETAEVAGVAAQILHRNRARNCHVFPCHSTEMDDPPRVDVVVSETLGNYALEENILETAKDAVARHLKPGGALIPRQVIQRVCPVVTSRIQEEFCAWDRVGLDL 162
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BLAST of mRNA_P-wetherbeei_contig53272.1.1 vs. uniprot
Match: UPI000931664A (50S ribosomal protein L11 methyltransferase n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI000931664A)

HSP 1 Score: 234 bits (596), Expect = 2.240e-74
Identity = 110/163 (67.48%), Postives = 132/163 (80.98%), Query Frame = 1 
Query:    1 MRIEYHRTLVSDRVRNAAFHAALKAVIRPGETIVADIGAGTGLLGMMAAKLGAKEVYLYETAAVAGLCNDLLKRNRMRNCMLFPCHSTEMESPPKVDVVISETLGNYPLEEDIVATLRDAKKRHLKPGGVMIPSRVAQFVAPVVAARVHKELMAWDRIGYDLD 489
            MRIEYHRTL++DRVRN AFH ALK VI+PGET VADIGAGTGL+G+MAAKLGA EV LYE A VAG+    +K+NR R C L PCHSTEME PP+VDVV+SETLGNY  EE+I+ TL DA+ RHLK GGVMIP+R+ QF  PV++ R+H+EL  WD +G+ +D
Sbjct:    1 MRIEYHRTLIADRVRNQAFHDALKRVIKPGETTVADIGAGTGLIGLMAAKLGAPEVLLYEAAEVAGVAAQTIKKNRARACHLMPCHSTEMEDPPRVDVVVSETLGNYAFEENIIDTLADAQLRHLKDGGVMIPARIRQFAVPVISDRIHRELTVWDEVGFCVD 163
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BLAST of mRNA_P-wetherbeei_contig53272.1.1 vs. uniprot
Match: UPI00037EFFBC (50S ribosomal protein L11 methyltransferase n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI00037EFFBC)

HSP 1 Score: 231 bits (590), Expect = 1.810e-73
Identity = 108/163 (66.26%), Postives = 134/163 (82.21%), Query Frame = 1 
Query:    1 MRIEYHRTLVSDRVRNAAFHAALKAVIRPGETIVADIGAGTGLLGMMAAKLGAKEVYLYETAAVAGLCNDLLKRNRMRNCMLFPCHSTEMESPPKVDVVISETLGNYPLEEDIVATLRDAKKRHLKPGGVMIPSRVAQFVAPVVAARVHKELMAWDRIGYDLD 489
            MRIEYHRTL++D VRN AFH AL  VI+ GET+VADIGAGTGL+G+MAAKLGA+EV LYE A VAG+    +K NR R C L PCHSTEME PP+VDVV+SETLGNY  EE+I+ TL DA+KRH+K GGV+IP+R+ QFVAPV++ R+H+EL+ W+ +G+ LD
Sbjct:    1 MRIEYHRTLIADHVRNQAFHDALSRVIKTGETVVADIGAGTGLIGLMAAKLGAREVILYEAAEVAGVAAATIKANRARACHLMPCHSTEMEDPPRVDVVVSETLGNYAFEENIIDTLADARKRHMKDGGVIIPARIRQFVAPVISDRIHRELIVWNDVGFGLD 163
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BLAST of mRNA_P-wetherbeei_contig53272.1.1 vs. uniprot
Match: V5S9D3_9HYPH (Ribonucleotide-diphosphate reductase subunit beta n=1 Tax=Hyphomicrobium nitrativorans NL23 TaxID=1029756 RepID=V5S9D3_9HYPH)

HSP 1 Score: 231 bits (588), Expect = 3.640e-73
Identity = 109/163 (66.87%), Postives = 132/163 (80.98%), Query Frame = 1 
Query:    1 MRIEYHRTLVSDRVRNAAFHAALKAVIRPGETIVADIGAGTGLLGMMAAKLGAKEVYLYETAAVAGLCNDLLKRNRMRNCMLFPCHSTEMESPPKVDVVISETLGNYPLEEDIVATLRDAKKRHLKPGGVMIPSRVAQFVAPVVAARVHKELMAWDRIGYDLD 489
            MRIEYHRTL++DRVRN AFH AL   IR GET VADIGAGTGL+G+MAAKLGA++V LYE A VAG+ +  L+ NR R C L PCHSTEME PP+VD+V+SETLGNY  EE+I+ATL DA++RHLK GGV+IPSR+ QFVAPV+  R+ +EL  WD +G+ LD
Sbjct:    1 MRIEYHRTLIADRVRNQAFHDALARTIRKGETTVADIGAGTGLIGLMAAKLGARDVILYEAAEVAGVADATLRANRARGCHLMPCHSTEMEDPPRVDLVVSETLGNYAFEENIIATLADAERRHLKDGGVIIPSRIRQFVAPVITDRIQRELTVWDDVGFGLD 163
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BLAST of mRNA_P-wetherbeei_contig53272.1.1 vs. uniprot
Match: A0A6I3KGD0_9HYPH (Methyltransferase n=1 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KGD0_9HYPH)

HSP 1 Score: 229 bits (583), Expect = 1.740e-72
Identity = 112/162 (69.14%), Postives = 130/162 (80.25%), Query Frame = 1 
Query:    1 MRIEYHRTLVSDRVRNAAFHAALKAVIRPGETIVADIGAGTGLLGMMAAKLGAKEVYLYETAAVAGLCNDLLKRNRMRNCMLFPCHSTEMESPPKVDVVISETLGNYPLEEDIVATLRDAKKRHLKPGGVMIPSRVAQFVAPVVAARVHKELMAWDRIGYDL 486
            MRIEYHRTL++DRVRN AF AAL+AVI+ GET VADIG GTGLL +MAAKLGA+EV+LYETA VAG+   +LK N  RNC L PCHSTEM  PPKVDVV+SETLGN+  EE ++ TL DAKKR LKP GV+IP  + QFVAPVV+ R+HKE  AWD  G+DL
Sbjct:    1 MRIEYHRTLIADRVRNQAFEAALRAVIKKGETTVADIGTGTGLLALMAAKLGAREVFLYETAEVAGVAAKVLKANGARNCHLIPCHSTEMVDPPKVDVVVSETLGNFAFEEHMIETLADAKKRFLKPRGVIIPRSLEQFVAPVVSDRIHKEFAAWDETGFDL 162
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BLAST of mRNA_P-wetherbeei_contig53272.1.1 vs. uniprot
Match: A0A2S5MD50_HYPSQ (Ribonucleotide-diphosphate reductase subunit beta n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5MD50_HYPSQ)

HSP 1 Score: 228 bits (581), Expect = 4.180e-72
Identity = 108/163 (66.26%), Postives = 136/163 (83.44%), Query Frame = 1 
Query:    1 MRIEYHRTLVSDRVRNAAFHAALKAVIRPGETIVADIGAGTGLLGMMAAKLGAKEVYLYETAAVAGLCNDLLKRNRMRNCMLFPCHSTEMESPPKVDVVISETLGNYPLEEDIVATLRDAKKRHLKPGGVMIPSRVAQFVAPVVAARVHKELMAWDRIGYDLD 489
            MRIEYHRTL++D VRN A + ALKAVI P +++VADIGAGTGLLG+MA+KLGAK VYL+ETA VAG+   L+K NR++NC L PCHSTE +    VDV++SETLGNY LEE+IVATL DAK+R+LKP G+MIP +++QFVAPV+A R+H +L  WDR+GYD+D
Sbjct:    1 MRIEYHRTLIADTVRNDALYRALKAVIVPAQSVVADIGAGTGLLGIMASKLGAKTVYLFETAEVAGVAAKLIKANRVKNCHLIPCHSTEFQDRLAVDVIVSETLGNYALEENIVATLVDAKRRYLKPKGIMIPHQISQFVAPVIAPRIHHDLTVWDRMGYDVD 163
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BLAST of mRNA_P-wetherbeei_contig53272.1.1 vs. uniprot
Match: UPI000930C745 (50S ribosomal protein L11 methyltransferase n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI000930C745)

HSP 1 Score: 225 bits (574), Expect = 4.000e-71
Identity = 109/162 (67.28%), Postives = 128/162 (79.01%), Query Frame = 1 
Query:    1 MRIEYHRTLVSDRVRNAAFHAALKAVIRPGETIVADIGAGTGLLGMMAAKLGAKEVYLYETAAVAGLCNDLLKRNRMRNCMLFPCHSTEMESPPKVDVVISETLGNYPLEEDIVATLRDAKKRHLKPGGVMIPSRVAQFVAPVVAARVHKELMAWDRIGYDL 486
            MRIEYHRTL++DRVRNAAF  AL++VI+ GET VADIG GTGLL +MAAKLGA+EVYLYETA V G+   +LK N  RNC L PCHSTEM  PP+VDVV+SETLGNY  EE  + TL DAKKR LKPGGV+IP  + QFVAPVV+ R+ ++  AWD  G+DL
Sbjct:    1 MRIEYHRTLIADRVRNAAFEKALRSVIKKGETTVADIGTGTGLLALMAAKLGAREVYLYETAEVGGVAEKILKANGARNCHLIPCHSTEMVDPPRVDVVVSETLGNYAFEEHTIETLADAKKRFLKPGGVLIPRALKQFVAPVVSDRIARDFAAWDATGFDL 162
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BLAST of mRNA_P-wetherbeei_contig53272.1.1 vs. uniprot
Match: D8JU77_HYPDA (Ribosomal L11 methyltransferase n=2 Tax=Hyphomicrobium TaxID=81 RepID=D8JU77_HYPDA)

HSP 1 Score: 224 bits (571), Expect = 1.360e-70
Identity = 105/163 (64.42%), Postives = 134/163 (82.21%), Query Frame = 1 
Query:    1 MRIEYHRTLVSDRVRNAAFHAALKAVIRPGETIVADIGAGTGLLGMMAAKLGAKEVYLYETAAVAGLCNDLLKRNRMRNCMLFPCHSTEMESPPKVDVVISETLGNYPLEEDIVATLRDAKKRHLKPGGVMIPSRVAQFVAPVVAARVHKELMAWDRIGYDLD 489
            MRIEYHRTL++D  RN AF  ALK+VI PG+T+VADIGAGTGLLG+MA+KLGAK+V+L+ETA VAG+   +LK N+ + C L PCHSTE +    VDV++SETLGNY LEE+I+ATL DA++R LKPGG +IPSR+AQ+VAPV+A R+ +EL AW R+G+ LD
Sbjct:    1 MRIEYHRTLIADTARNEAFFRALKSVIEPGKTVVADIGAGTGLLGLMASKLGAKDVFLFETAEVAGVAAQVLKANKAKRCHLIPCHSTEFDDKLAVDVIVSETLGNYALEENIIATLADARQRFLKPGGTIIPSRIAQYVAPVIAPRIDQELRAWQRVGHGLD 163
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53272.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4TPF9_9HYPH4.840e-8172.39Ribonucleotide-diphosphate reductase subunit beta ... [more]
A0A2W4RVR5_9PROT2.410e-7668.10Ribonucleotide-diphosphate reductase subunit beta ... [more]
A0A2S5PB62_HYPSQ4.430e-7569.75Ribonucleotide-diphosphate reductase subunit beta ... [more]
UPI000931664A2.240e-7467.4850S ribosomal protein L11 methyltransferase n=1 Ta... [more]
UPI00037EFFBC1.810e-7366.2650S ribosomal protein L11 methyltransferase n=1 Ta... [more]
V5S9D3_9HYPH3.640e-7366.87Ribonucleotide-diphosphate reductase subunit beta ... [more]
A0A6I3KGD0_9HYPH1.740e-7269.14Methyltransferase n=1 Tax=Hyphomicrobium album Tax... [more]
A0A2S5MD50_HYPSQ4.180e-7266.26Ribonucleotide-diphosphate reductase subunit beta ... [more]
UPI000930C7454.000e-7167.2850S ribosomal protein L11 methyltransferase n=1 Ta... [more]
D8JU77_HYPDA1.360e-7064.42Ribosomal L11 methyltransferase n=2 Tax=Hyphomicro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53272contigP-wetherbeei_contig53272:43..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1267005.KB911257_gene710
PFAMsPRMT5_C,PrmA
Model size489
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00003,RC02120,RC03388,RC03390
KEGG koko:K11434
KEGG ReactionR11216,R11217,R11219
KEGG Pathwayko04068,ko04922,map04068,map04922
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.98e-74
EggNOG OGsCOG4076@1|root,COG4076@2|Bacteria,1RB85@1224|Proteobacteria,2UH6R@28211|Alphaproteobacteria
EC2.1.1.319
DescriptionPRMT5 oligomerisation domain
Cds size489
COG categoryS
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186797.6425748-CDS-P-wetherbeei_contig53272:42..5311683186797.6425748-CDS-P-wetherbeei_contig53272:42..531Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53272 43..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53272.1.1prot_P-wetherbeei_contig53272.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53272 43..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53272.1.1

>prot_P-wetherbeei_contig53272.1.1 ID=prot_P-wetherbeei_contig53272.1.1|Name=mRNA_P-wetherbeei_contig53272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
MRIEYHRTLVSDRVRNAAFHAALKAVIRPGETIVADIGAGTGLLGMMAAK
LGAKEVYLYETAAVAGLCNDLLKRNRMRNCMLFPCHSTEMESPPKVDVVI
SETLGNYPLEEDIVATLRDAKKRHLKPGGVMIPSRVAQFVAPVVAARVHK
ELMAWDRIGYDLD
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mRNA from alignment at P-wetherbeei_contig53272:43..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53272.1.1 ID=mRNA_P-wetherbeei_contig53272.1.1|Name=mRNA_P-wetherbeei_contig53272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig53272:43..531+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCATCGAATATCACAGAACTCTGGTTTCCGACCGGGTCCGCAACGC
GGCCTTCCACGCGGCATTGAAGGCGGTGATCCGTCCTGGTGAGACCATCG
TTGCCGACATCGGCGCGGGGACTGGCTTGCTCGGGATGATGGCCGCAAAG
CTCGGCGCCAAGGAAGTTTATCTCTACGAGACGGCCGCGGTTGCGGGGCT
GTGCAACGATCTGCTGAAGCGAAACAGGATGCGCAATTGCATGCTGTTTC
CCTGCCATTCGACGGAGATGGAGAGCCCGCCCAAGGTCGATGTCGTGATC
TCGGAGACGCTCGGCAATTATCCCCTCGAGGAAGATATCGTCGCCACGCT
GCGCGACGCCAAGAAGCGCCATCTGAAGCCCGGCGGCGTCATGATCCCGA
GCCGGGTCGCCCAGTTCGTCGCGCCGGTCGTCGCGGCGCGTGTCCACAAG
GAGCTGATGGCCTGGGACCGCATCGGCTACGATCTCGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53272:43..531+

>mRNA_P-wetherbeei_contig53272.1.1 ID=mRNA_P-wetherbeei_contig53272.1.1|Name=mRNA_P-wetherbeei_contig53272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig53272:43..531+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCATCGAATATCACAGAACTCTGGTTTCCGACCGGGTCCGCAACGC
GGCCTTCCACGCGGCATTGAAGGCGGTGATCCGTCCTGGTGAGACCATCG
TTGCCGACATCGGCGCGGGGACTGGCTTGCTCGGGATGATGGCCGCAAAG
CTCGGCGCCAAGGAAGTTTATCTCTACGAGACGGCCGCGGTTGCGGGGCT
GTGCAACGATCTGCTGAAGCGAAACAGGATGCGCAATTGCATGCTGTTTC
CCTGCCATTCGACGGAGATGGAGAGCCCGCCCAAGGTCGATGTCGTGATC
TCGGAGACGCTCGGCAATTATCCCCTCGAGGAAGATATCGTCGCCACGCT
GCGCGACGCCAAGAAGCGCCATCTGAAGCCCGGCGGCGTCATGATCCCGA
GCCGGGTCGCCCAGTTCGTCGCGCCGGTCGTCGCGGCGCGTGTCCACAAG
GAGCTGATGGCCTGGGACCGCATCGGCTACGATCTCGAT
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